guangchuang yu authored on 11/10/2016 02:07:36
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+environment:
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+  matrix:
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+    - R_VERSION: devel
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+      R_ARCH: x64
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+      USE_RTOOLS: true
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+  _R_CHECK_FORCE_SUGGESTS_: false
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+
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+# DO NOT CHANGE the "init" and "install" sections below
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+
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+# Download script file from GitHub
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+init:
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+  ps: |
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+        $ErrorActionPreference = "Stop"
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+        Invoke-WebRequest http://raw.github.com/krlmlr/r-appveyor/master/scripts/appveyor-tool.ps1 -OutFile "..\appveyor-tool.ps1"
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+        Import-Module '..\appveyor-tool.ps1'
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+
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+install:
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+  ps: Bootstrap
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+
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+# Adapt as necessary starting from here
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+
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+build_script:
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+  - travis-tool.sh install_bioc BiocStyle Biostrings  
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+  - travis-tool.sh install_deps
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+
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+test_script:
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+  - travis-tool.sh run_tests
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+
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+on_failure:
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+  - 7z a failure.zip *.Rcheck\*
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+  - appveyor PushArtifact failure.zip
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+
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+artifacts:
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+  - path: '*.Rcheck\**\*.log'
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+    name: Logs
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+
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+  - path: '*.Rcheck\**\*.out'
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+    name: Logs
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+
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+  - path: '*.Rcheck\**\*.fail'
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+    name: Logs
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+
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+  - path: '*.Rcheck\**\*.Rout'
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+    name: Logs
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+
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+  - path: '\*_*.tar.gz'
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+    name: Linux Package
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+
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+  - path: '\*_*.zip'
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+    name: Windows Package
Browse code

remove site

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ggtree@122175 bc3139a8-67e5-0310-9ffc-ced21a209358

g.yu authored on 11/10/2016 02:01:09
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-environment:
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-  matrix:
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-    - R_VERSION: devel
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-      R_ARCH: x64
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-      USE_RTOOLS: true
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-  _R_CHECK_FORCE_SUGGESTS_: false
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-
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-# DO NOT CHANGE the "init" and "install" sections below
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-
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-# Download script file from GitHub
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-init:
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-  ps: |
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-        $ErrorActionPreference = "Stop"
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-        Invoke-WebRequest http://raw.github.com/krlmlr/r-appveyor/master/scripts/appveyor-tool.ps1 -OutFile "..\appveyor-tool.ps1"
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-        Import-Module '..\appveyor-tool.ps1'
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-
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-install:
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-  ps: Bootstrap
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-
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-# Adapt as necessary starting from here
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-
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-build_script:
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-  - travis-tool.sh install_bioc BiocStyle Biostrings  
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-  - travis-tool.sh install_deps
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-
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-test_script:
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-  - travis-tool.sh run_tests
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-
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-on_failure:
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-  - 7z a failure.zip *.Rcheck\*
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-  - appveyor PushArtifact failure.zip
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-
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-artifacts:
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-  - path: '*.Rcheck\**\*.log'
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-    name: Logs
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-
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-  - path: '*.Rcheck\**\*.out'
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-    name: Logs
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-
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-  - path: '*.Rcheck\**\*.fail'
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-    name: Logs
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-
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-  - path: '*.Rcheck\**\*.Rout'
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-    name: Logs
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-
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-  - path: '\*_*.tar.gz'
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-    name: Linux Package
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-
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-  - path: '\*_*.zip'
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-    name: Windows Package
Browse code

configure appveyor

GuangchuangYu authored on 06/09/2016 04:15:09
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@@ -1,3 +1,10 @@
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+environment:
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+  matrix:
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+    - R_VERSION: devel
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+      R_ARCH: x64
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+      USE_RTOOLS: true
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+  _R_CHECK_FORCE_SUGGESTS_: false
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+
1 8
 # DO NOT CHANGE the "init" and "install" sections below
2 9
 
3 10
 # Download script file from GitHub
Browse code

appveyor

GuangchuangYu authored on 09/08/2016 12:03:25
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@@ -13,8 +13,7 @@ install:
13 13
 # Adapt as necessary starting from here
14 14
 
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 build_script:
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-  - travis-tool.sh install_r base64
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-   - travis-tool.sh install_bioc BiocInstaller BiocStyle Biostrings  
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+  - travis-tool.sh install_bioc BiocStyle Biostrings  
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   - travis-tool.sh install_deps
19 18
 
20 19
 test_script:
... ...
@@ -38,7 +37,7 @@ artifacts:
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     name: Logs
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   - path: '\*_*.tar.gz'
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-    name: Bits
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+    name: Linux Package
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   - path: '\*_*.zip'
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-    name: Bits
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+    name: Windows Package
Browse code

appveyor

GuangchuangYu authored on 09/08/2016 11:55:15
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@@ -14,7 +14,7 @@ install:
14 14
 
15 15
 build_script:
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   - travis-tool.sh install_r base64
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-   - travis-tool.sh install_bioc BiocStyle Biostrings  
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+   - travis-tool.sh install_bioc BiocInstaller BiocStyle Biostrings  
18 18
   - travis-tool.sh install_deps
19 19
 
20 20
 test_script:
Browse code

appveyor

GuangchuangYu authored on 09/08/2016 11:50:53
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@@ -1,30 +1,44 @@
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-environment:
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-  R_CHECK_ARGS: --no-manual
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-  _R_CHECK_FORCE_SUGGESTS_: false
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- 
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+# DO NOT CHANGE the "init" and "install" sections below
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+
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+# Download script file from GitHub
5 4
 init:
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   ps: |
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         $ErrorActionPreference = "Stop"
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         Invoke-WebRequest http://raw.github.com/krlmlr/r-appveyor/master/scripts/appveyor-tool.ps1 -OutFile "..\appveyor-tool.ps1"
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         Import-Module '..\appveyor-tool.ps1'
10 9
 
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-  
12 10
 install:
13 11
   ps: Bootstrap
14 12
 
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+# Adapt as necessary starting from here
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+
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 build_script:
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   - travis-tool.sh install_r base64
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-  - travis-tool.sh install_bioc BiocStyle Biostrings
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-##  - travis-tool.sh install_bioc_deps
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-  
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+   - travis-tool.sh install_bioc BiocStyle Biostrings  
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+  - travis-tool.sh install_deps
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+
20 20
 test_script:
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   - travis-tool.sh run_tests
22 22
 
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 on_failure:
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-  - travis-tool.sh dump_logs
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+  - 7z a failure.zip *.Rcheck\*
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+  - appveyor PushArtifact failure.zip
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+
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+artifacts:
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+  - path: '*.Rcheck\**\*.log'
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+    name: Logs
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+
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+  - path: '*.Rcheck\**\*.out'
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+    name: Logs
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+
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+  - path: '*.Rcheck\**\*.fail'
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+    name: Logs
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+
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+  - path: '*.Rcheck\**\*.Rout'
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+    name: Logs
25 39
 
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-## notifications:
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-##   email:
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-##     on_success: change
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-##     on_failure: change
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+  - path: '\*_*.tar.gz'
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+    name: Bits
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+  - path: '\*_*.zip'
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+    name: Bits
Browse code

test appveyor

GuangchuangYu authored on 09/08/2016 11:47:10
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@@ -1,6 +1,7 @@
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 environment:
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   R_CHECK_ARGS: --no-manual
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-
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+  _R_CHECK_FORCE_SUGGESTS_: false
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+ 
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 init:
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   ps: |
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         $ErrorActionPreference = "Stop"
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@@ -12,8 +13,8 @@ install:
12 13
   ps: Bootstrap
13 14
 
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 build_script:
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-  - travis-tool.sh install_deps
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-  - travis-tool.sh install_bioc BiocStyle Biostrings EBImage
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+  - travis-tool.sh install_r base64
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+  - travis-tool.sh install_bioc BiocStyle Biostrings
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 ##  - travis-tool.sh install_bioc_deps
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 test_script:
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@@ -22,8 +23,8 @@ test_script:
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 on_failure:
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   - travis-tool.sh dump_logs
24 25
 
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-notifications:
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-  email:
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-    on_success: change
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-    on_failure: change
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+## notifications:
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+##   email:
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+##     on_success: change
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+##     on_failure: change
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Browse code

update appveyor.yml

GuangchuangYu authored on 22/05/2015 08:46:42
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@@ -13,9 +13,7 @@ install:
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 build_script:
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   - travis-tool.sh install_deps
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-  - travis-tool.sh install_bioc EBImage
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-  - travis-tool.sh install_bioc BiocStyle
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-  - travis-tool.sh install_bioc Biostrings
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+  - travis-tool.sh install_bioc BiocStyle Biostrings EBImage
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 ##  - travis-tool.sh install_bioc_deps
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 test_script:
Browse code

appveyor

GuangchuangYu authored on 22/05/2015 05:56:09
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@@ -7,20 +7,17 @@ init:
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         Invoke-WebRequest http://raw.github.com/krlmlr/r-appveyor/master/scripts/appveyor-tool.ps1 -OutFile "..\appveyor-tool.ps1"
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         Import-Module '..\appveyor-tool.ps1'
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-
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-apt_packages:
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-  - libfftw3-dev
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-
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-# before_install:
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-#   - sudo apt-get install libfftw3-dev
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 install:
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   ps: Bootstrap
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20 14
 build_script:
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-  - travis-tool.sh install_bioc_deps
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   - travis-tool.sh install_deps
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-
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+  - travis-tool.sh install_bioc EBImage
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+  - travis-tool.sh install_bioc BiocStyle
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+  - travis-tool.sh install_bioc Biostrings
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+##  - travis-tool.sh install_bioc_deps
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+  
24 21
 test_script:
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   - travis-tool.sh run_tests
26 23
 
Browse code

appveyor

GuangchuangYu authored on 22/05/2015 05:50:35
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@@ -7,8 +7,12 @@ init:
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         Invoke-WebRequest http://raw.github.com/krlmlr/r-appveyor/master/scripts/appveyor-tool.ps1 -OutFile "..\appveyor-tool.ps1"
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         Import-Module '..\appveyor-tool.ps1'
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-before_install:
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-  - sudo apt-get install libfftw3-dev
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+
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+apt_packages:
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+  - libfftw3-dev
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+
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+# before_install:
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+#   - sudo apt-get install libfftw3-dev
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13 17
 install:
14 18
   ps: Bootstrap
Browse code

appveyor

GuangchuangYu authored on 22/05/2015 05:47:11
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@@ -7,6 +7,9 @@ init:
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         Invoke-WebRequest http://raw.github.com/krlmlr/r-appveyor/master/scripts/appveyor-tool.ps1 -OutFile "..\appveyor-tool.ps1"
8 8
         Import-Module '..\appveyor-tool.ps1'
9 9
 
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+before_install:
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+  - sudo apt-get install libfftw3-dev
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+  
10 13
 install:
11 14
   ps: Bootstrap
12 15
 
Browse code

appveyor

GuangchuangYu authored on 09/02/2015 10:08:09
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+environment:
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+  R_CHECK_ARGS: --no-manual
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+
4
+init:
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+  ps: |
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+        $ErrorActionPreference = "Stop"
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+        Invoke-WebRequest http://raw.github.com/krlmlr/r-appveyor/master/scripts/appveyor-tool.ps1 -OutFile "..\appveyor-tool.ps1"
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+        Import-Module '..\appveyor-tool.ps1'
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+
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+install:
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+  ps: Bootstrap
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+
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+build_script:
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+  - travis-tool.sh install_bioc_deps
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+  - travis-tool.sh install_deps
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+
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+test_script:
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+  - travis-tool.sh run_tests
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+
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+on_failure:
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+  - travis-tool.sh dump_logs
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+
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+notifications:
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+  email:
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+    on_success: change
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+    on_failure: change
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+