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update docs

Guangchuang Yu authored on 19/11/2018 08:17:45
Showing4 changed files

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@@ -52,4 +52,4 @@ BugReports: https://github.com/GuangchuangYu/ggtree/issues
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 Packaged: 2014-12-03 08:16:14 UTC; root
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 biocViews: Alignment, Annotation, Clustering, DataImport,
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     MultipleSequenceAlignment, ReproducibleResearch, Software, Visualization
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-RoxygenNote: 6.1.0
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+RoxygenNote: 6.1.1
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@@ -31,7 +31,7 @@ install:
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 check: rd build
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 	cd ..;\
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-	Rscript -e 'rcmdcheck::rcmdcheck("$(PKGNAME)_$(PKGVERS).tar.gz")'
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+	Rscript -e "rcmdcheck::rcmdcheck('$(PKGNAME)_$(PKGVERS).tar.gz')"
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 check2: rd build
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 	cd ..;\
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@@ -43,7 +43,7 @@ check3: rd build2
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 bioccheck:
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 	cd ..;\
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-	Rscript -e 'BiocCheck::BiocCheck("$(PKGNAME)_$(PKGVERS).tar.gz")'
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+	Rscript -e "BiocCheck::BiocCheck('$(PKGNAME)_$(PKGVERS).tar.gz')"
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 clean:
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 	cd ..;\
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@@ -5,11 +5,11 @@
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                   "For help: https://guangchuangyu.github.io/software/", pkgname, "\n\n")
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     citation <- paste0("If you use ", pkgname, " in published research, please cite the most appropriate paper(s):\n\n",
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-                       '\033[36m', '\u25C9', '\033[39m ',
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+                       '\033[36m', '-', '\033[39m ',
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                        "Guangchuang Yu, David Smith, Huachen Zhu, Yi Guan, Tommy Tsan-Yuk Lam. ",
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                        "ggtree: an R package for visualization and annotation of phylogenetic trees with their covariates and other associated data. ",
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                        "Methods in Ecology and Evolution 2017, 8(1):28-36, doi:10.1111/2041-210X.12628\n\n",
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-                       '\033[36m', '\u25C9', '\033[39m ',
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+                       '\033[36m', '-', '\033[39m ',
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                        "Guangchuang Yu, Tommy Tsan-Yuk Lam, Huachen Zhu, Yi Guan. ",
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                        "Two methods for mapping and visualizing associated data on phylogeny using ggtree. ",
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                        "Molecular Biology and Evolution 2018, accepted. doi: 10.1093/molbev/msy194"
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@@ -4,11 +4,14 @@
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 \name{reroot}
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 \alias{reroot}
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 \alias{reroot,phylo-method}
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+\alias{reroot,treedata-method}
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 \title{reroot method}
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 \usage{
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 reroot(object, node, ...)
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 \S4method{reroot}{phylo}(object, node, ...)
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+
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+\S4method{reroot}{treedata}(object, node, ...)
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 }
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 \arguments{
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 \item{object}{\code{treedata} object}