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-## reference: http://docs.travis-ci.com/user/languages/r/

-

-language: r

-r:

-  - devel

-  - bioc-devel

-  

-cache: packages

-bioc_required: true

-

-os:

-  - linux

-  - osx

-

-

-apt_packages:

-  - libfftw3-dev

-

-env:

-  global:

-    - _R_CHECK_FORCE_SUGGESTS_=False

-    - R_LIBS="http://cran.rstudio.com"

-

-  

-after_failure:

-  - ./travis-tool.sh dump_logs

-

-r_github_packages:

-  - jimhester/covr

-

-after_success:

-- Rscript -e 'library(covr); codecov()'

-

-## notifications:

-##   email:

-##     on_success: change

-##     on_failure: change

-

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@@ -1,27 +0,0 @@

-ggtree: an R package for visualization and annotation of phylogenetic trees with their covariates and other associated data

-===========================================================================================================================

-

-[![platform](http://www.bioconductor.org/shields/availability/devel/ggtree.svg)](https://www.bioconductor.org/packages/devel/bioc/html/ggtree.html#archives) [![Build Status](http://www.bioconductor.org/shields/build/devel/bioc/ggtree.svg)](https://bioconductor.org/checkResults/devel/bioc-LATEST/ggtree/) [![Linux/Mac Travis Build Status](https://img.shields.io/travis/GuangchuangYu/ggtree/master.svg?label=Mac%20OSX%20%26%20Linux)](https://travis-ci.org/GuangchuangYu/ggtree) [![AppVeyor Build Status](https://img.shields.io/appveyor/ci/Guangchuangyu/ggtree/master.svg?label=Windows)](https://ci.appveyor.com/project/GuangchuangYu/ggtree)

-

-[![packageversion](https://img.shields.io/badge/Package%20version-1.5.7-green.svg?style=flat)](https://github.com/GuangchuangYu/ggtree/blob/master/DESCRIPTION) [![Bioc](http://www.bioconductor.org/shields/years-in-bioc/ggtree.svg)](https://www.bioconductor.org/packages/devel/bioc/html/ggtree.html#since) [![post](http://www.bioconductor.org/shields/posts/ggtree.svg)](https://support.bioconductor.org/t/ggtree/) [![download](http://www.bioconductor.org/shields/downloads/ggtree.svg)](https://bioconductor.org/packages/stats/bioc/ggtree/) [![Twitter](https://img.shields.io/twitter/url/https/github.com/GuangchuangYu/ggtree.svg?style=social)](https://twitter.com/intent/tweet?hashtags=ggtree&url=https://guangchuangyu.github.io/ggtree)

-

-[![Project Status: Active - The project has reached a stable, usable state and is being actively developed.](http://www.repostatus.org/badges/latest/active.svg)](http://www.repostatus.org/#active) [![codecov](https://codecov.io/gh/GuangchuangYu/ggtree/branch/master/graph/badge.svg)](https://codecov.io/gh/GuangchuangYu/ggtree/branch/master/graph/badge.svg) [![Last-changedate](https://img.shields.io/badge/last%20change-2016--08--09-yellowgreen.svg)](https://github.com/GuangchuangYu/ggtree/commits/master) [![commit](http://www.bioconductor.org/shields/commits/bioc/ggtree.svg)](https://www.bioconductor.org/packages/devel/bioc/html/ggtree.html#svn_source) [![GitHub forks](https://img.shields.io/github/forks/GuangchuangYu/ggtree.svg)](https://github.com/GuangchuangYu/ggtree/network) [![GitHub stars](https://img.shields.io/github/stars/GuangchuangYu/ggtree.svg)](https://github.com/GuangchuangYu/ggtree/stargazers)

-

-The `ggtree` package extending the `ggplot2` package. It based on grammar of graphics and takes all the good parts of `ggplot2`.

-

-`ggtree` is designed for not only viewing phylogenetic tree but also displaying annotation data on the tree.

-

-Please cite the following article when using `ggtree`:

-

-**G Yu**, DK Smith, H Zhu, Y Guan, TTY Lam<sup>\*</sup>. ggtree: an R package for visualization and annotation of phylogenetic trees with their covariates and other associated data. ***Methods in Ecology and Evolution***. *accepted*

-

-

-For details, please visit our project website, <https://guangchuangyu.github.io/ggtree>.

-

--   [Documentation](https://guangchuangyu.github.io/ggtree/documentation/)

--   [FAQ](https://guangchuangyu.github.io/ggtree/faq/)

--   [Feedback](https://guangchuangyu.github.io/ggtree/#feedback)

--   [Example](https://guangchuangyu.github.io/ggtree/featuredArticles/)

-

-[![](https://guangchuangyu.github.io/ggtree/featured_img/2015_peiyu_1-s2.0-S1567134815300721-gr1.jpg)](https://guangchuangyu.github.io/ggtree/featuredArticles/)

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@@ -1,43 +0,0 @@

-# DO NOT CHANGE the "init" and "install" sections below

-

-# Download script file from GitHub

-init:

-  ps: |

-        $ErrorActionPreference = "Stop"

-        Invoke-WebRequest http://raw.github.com/krlmlr/r-appveyor/master/scripts/appveyor-tool.ps1 -OutFile "..\appveyor-tool.ps1"

-        Import-Module '..\appveyor-tool.ps1'

-

-install:

-  ps: Bootstrap

-

-# Adapt as necessary starting from here

-

-build_script:

-  - travis-tool.sh install_bioc BiocStyle Biostrings  

-  - travis-tool.sh install_deps

-

-test_script:

-  - travis-tool.sh run_tests

-

-on_failure:

-  - 7z a failure.zip *.Rcheck\*

-  - appveyor PushArtifact failure.zip

-

-artifacts:

-  - path: '*.Rcheck\**\*.log'

-    name: Logs

-

-  - path: '*.Rcheck\**\*.out'

-    name: Logs

-

-  - path: '*.Rcheck\**\*.fail'

-    name: Logs

-

-  - path: '*.Rcheck\**\*.Rout'

-    name: Logs

-

-  - path: '\*_*.tar.gz'

-    name: Linux Package

-

-  - path: '\*_*.zip'

-    name: Windows Package