guangchuang yu authored on 17/10/2016 05:28:39
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@@ -51,10 +51,10 @@ mkdocs: mdfiles |
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mdfiles: |
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cd mkdocs;\ |
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- Rscript -e 'library(ypages); gendoc("private/index.md", "blue", "docs/index.md")';\
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- Rscript -e 'library(ypages); gendoc("private/documentation.md", "blue", "docs/documentation.md")';\
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- Rscript -e 'library(ypages); gendoc("private/featuredArticles.md", "blue", "docs/featuredArticles.md")';\
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- Rscript -e 'library(ypages); gendoc("private/faq.md", "blue", "docs/faq.md")';\
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+ Rscript -e 'library(ypages); gendoc("src/index.md", "blue", "docs/index.md")';\
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+ Rscript -e 'library(ypages); gendoc("src/documentation.md", "blue", "docs/documentation.md")';\
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+ Rscript -e 'library(ypages); gendoc("src/featuredArticles.md", "blue", "docs/featuredArticles.md")';\
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+ Rscript -e 'library(ypages); gendoc("src/faq.md", "blue", "docs/faq.md")';\
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cd docs;\ |
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ln -f -s ../mysoftware/* ./ |
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@@ -119,6 +119,12 @@ |
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+<li > |
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+ <a href="../meshes/">meshes</a> |
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+</li> |
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+ |
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+ |
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+ |
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<li > |
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<a href="../ReactomePA/">ReactomePA</a> |
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</li> |
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@@ -143,7 +149,7 @@ |
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</a> |
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</li> |
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<li > |
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- <a rel="prev" href="../ReactomePA/"> |
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+ <a rel="prev" href="../meshes/"> |
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Next <i class="fa fa-arrow-right"></i> |
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</a> |
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</li> |
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@@ -119,6 +119,12 @@ |
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+<li > |
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+ <a href="../meshes/">meshes</a> |
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+</li> |
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+ |
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+ |
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+ |
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<li class="active"> |
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<a href="./">ReactomePA</a> |
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</li> |
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@@ -138,7 +144,7 @@ |
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</a> |
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</li> |
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<li > |
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- <a rel="next" href="../GOSemSim/"> |
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+ <a rel="next" href="../meshes/"> |
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<i class="fa fa-arrow-left"></i> Previous |
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</a> |
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</li> |
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@@ -119,6 +119,12 @@ |
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+<li > |
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+ <a href="../meshes/">meshes</a> |
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+</li> |
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+ |
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+ |
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+ |
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<li > |
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<a href="../ReactomePA/">ReactomePA</a> |
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</li> |
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@@ -211,11 +217,11 @@ |
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} |
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</style> |
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-<div id = 'chart150268e55865' class = 'rChart morris'></div> |
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+<div id = 'chart24642708de9f' class = 'rChart morris'></div> |
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<script type='text/javascript'> |
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var chartParams = {
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- "element": "chart150268e55865", |
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+ "element": "chart24642708de9f", |
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"width": 800, |
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"height": 400, |
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"xkey": "year", |
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@@ -229,7 +235,7 @@ |
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"pubid": "HtEfBTGE9r8C" |
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} |
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], |
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-"id": "chart150268e55865", |
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+"id": "chart24642708de9f", |
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"labels": "cites" |
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}, |
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chartType = "Bar" |
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new file mode 100644 |
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@@ -0,0 +1,222 @@ |
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+<!DOCTYPE html> |
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+<html lang="en"> |
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+ <head> |
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+ <meta charset="utf-8"> |
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+ <meta http-equiv="X-UA-Compatible" content="IE=edge"> |
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+ <meta name="viewport" content="width=device-width, initial-scale=1.0"> |
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+ |
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+ <meta name="author" content="Guangchuang Yu"> |
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+ <link rel="canonical" href="https://guangchuangyu.github.io/ggtree/meshes/"> |
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+ <link rel="shortcut icon" href="../img/favicon.ico"> |
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+ |
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+ <title>meshes - ggtree</title> |
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+ |
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+ <link href="../css/bootstrap-custom.min.css" rel="stylesheet"> |
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+ <link href="../css/font-awesome-4.0.3.css" rel="stylesheet"> |
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+ <link rel="stylesheet" href="../css/highlight.css"> |
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+ <link href="../css/base.css" rel="stylesheet"> |
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+ |
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+ <!-- HTML5 shim and Respond.js IE8 support of HTML5 elements and media queries --> |
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+ <!--[if lt IE 9]> |
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+ <script src="https://oss.maxcdn.com/libs/html5shiv/3.7.0/html5shiv.js"></script> |
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+ <script src="https://oss.maxcdn.com/libs/respond.js/1.3.0/respond.min.js"></script> |
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+ <![endif]--> |
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+ |
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+ |
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+ <script> |
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+ (function(i,s,o,g,r,a,m){i['GoogleAnalyticsObject']=r;i[r]=i[r]||function(){
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+ (i[r].q=i[r].q||[]).push(arguments)},i[r].l=1*new Date();a=s.createElement(o), |
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+ m=s.getElementsByTagName(o)[0];a.async=1;a.src=g;m.parentNode.insertBefore(a,m) |
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+ })(window,document,'script','//www.google-analytics.com/analytics.js','ga'); |
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+ |
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+ ga('create', 'UA-77901140-1', 'guangchuangyu.github.io');
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+ ga('send', 'pageview');
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+ </script> |
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+ |
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+ </head> |
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+ |
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+ <body> |
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+ |
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+ <div class="navbar navbar-default navbar-fixed-top" role="navigation"> |
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+ <div class="container"> |
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+ |
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+ <!-- Collapsed navigation --> |
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+ <div class="navbar-header"> |
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+ <!-- Expander button --> |
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+ <button type="button" class="navbar-toggle" data-toggle="collapse" data-target=".navbar-collapse"> |
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+ <span class="sr-only">Toggle navigation</span> |
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+ <span class="icon-bar"></span> |
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+ <span class="icon-bar"></span> |
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+ <span class="icon-bar"></span> |
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+ </button> |
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+ |
|
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+ <!-- Main title --> |
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+ <a class="navbar-brand" href="..">ggtree</a> |
|
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+ </div> |
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+ |
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+ <!-- Expanded navigation --> |
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+ <div class="navbar-collapse collapse"> |
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+ <!-- Main navigation --> |
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+ <ul class="nav navbar-nav"> |
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+ |
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+ |
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+ <li > |
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+ <a href="..">Home</a> |
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+ </li> |
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+ |
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+ |
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+ |
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+ <li > |
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+ <a href="../documentation/">Documentation</a> |
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+ </li> |
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+ |
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+ |
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+ |
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+ <li > |
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+ <a href="../faq/">FAQ</a> |
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+ </li> |
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+ |
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+ |
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+ |
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+ <li > |
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+ <a href="../featuredArticles/">Featured Articles</a> |
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+ </li> |
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+ |
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+ |
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+ |
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+ <li class="dropdown active"> |
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+ <a href="#" class="dropdown-toggle" data-toggle="dropdown">My Software <b class="caret"></b></a> |
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+ <ul class="dropdown-menu"> |
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+ |
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+ |
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+<li > |
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+ <a href="../ChIPseeker/">ChIPseeker</a> |
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+</li> |
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+ |
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+ |
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+ |
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+<li > |
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+ <a href="../clusterProfiler/">clusterProfiler</a> |
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+</li> |
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+ |
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+ |
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+ |
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+<li > |
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+ <a href="../DOSE/">DOSE</a> |
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+</li> |
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+ |
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+ |
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+ |
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+<li > |
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+ <a href="../ggtree/">ggtree</a> |
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+</li> |
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+ |
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+ |
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+ |
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+<li > |
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+ <a href="../GOSemSim/">GOSemSim</a> |
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+</li> |
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+ |
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+ |
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+ |
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+<li class="active"> |
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+ <a href="./">meshes</a> |
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+</li> |
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+ |
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+ |
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+ |
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+<li > |
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+ <a href="../ReactomePA/">ReactomePA</a> |
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+</li> |
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+ |
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+ |
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+ </ul> |
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+ </li> |
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+ |
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+ |
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+ </ul> |
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+ |
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+ <!-- Search, Navigation and Repo links --> |
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+ <ul class="nav navbar-nav navbar-right"> |
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+ <li> |
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+ <a href="#" data-toggle="modal" data-target="#mkdocs_search_modal"> |
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+ <i class="fa fa-search"></i> Search |
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+ </a> |
|
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+ </li> |
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+ <li > |
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+ <a rel="next" href="../GOSemSim/"> |
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+ <i class="fa fa-arrow-left"></i> Previous |
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+ </a> |
|
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+ </li> |
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+ <li > |
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+ <a rel="prev" href="../ReactomePA/"> |
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+ Next <i class="fa fa-arrow-right"></i> |
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+ </a> |
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+ </li> |
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+ |
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+ <li> |
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+ <a href="https://github.com/GuangchuangYu/ggtree"> |
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+ |
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+ <i class="fa fa-github"></i> |
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+ |
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+ GitHub |
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+ </a> |
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+ </li> |
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+ |
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+ </ul> |
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+ </div> |
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+ </div> |
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+</div> |
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+ |
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+ <div class="container"> |
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+ <div class="col-md-3"><div class="bs-sidebar hidden-print affix well" role="complementary"> |
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+ <ul class="nav bs-sidenav"> |
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+ |
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+ </ul> |
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+</div></div> |
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+ <div class="col-md-9" role="main"> |
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+ |
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+<p><meta http-equiv="refresh" content="0; url=https://guangchuangyu.github.io/meshes" /></p></div> |
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+ </div> |
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+ |
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+ <footer class="col-md-12"> |
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+ <hr> |
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+ |
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+ <center>Copyright © 2016 <a href="https://guangchuangyu.github.io">Guangchuang Yu</a>.<div style="width:250px;margin:auto;"><script type="text/javascript" src="//rf.revolvermaps.com/0/0/7.js?i=5qpvv5zz7fp&m=0&c=ff0000&cr1=ffffff&sx=0" async="async"></script></div></center> |
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+ |
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+ <center>Documentation built with <a href="http://www.mkdocs.org/">MkDocs</a>.</center> |
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+ </footer> |
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+ |
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+ <script src="../js/jquery-1.10.2.min.js"></script> |
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+ <script src="../js/bootstrap-3.0.3.min.js"></script> |
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+ <script src="../js/highlight.pack.js"></script> |
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+ <script>var base_url = '..';</script> |
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+ <script data-main="../mkdocs/js/search.js" src="../mkdocs/js/require.js"></script> |
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+ <script src="../js/base.js"></script> |
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+ |
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+ <div class="modal" id="mkdocs_search_modal" tabindex="-1" role="dialog" aria-labelledby="Search Modal" aria-hidden="true"> |
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+ <div class="modal-dialog"> |
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+ <div class="modal-content"> |
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+ <div class="modal-header"> |
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+ <button type="button" class="close" data-dismiss="modal"><span aria-hidden="true">×</span><span class="sr-only">Close</span></button> |
|
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+ <h4 class="modal-title" id="exampleModalLabel">Search</h4> |
|
| 203 |
+ </div> |
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+ <div class="modal-body"> |
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+ <p> |
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+ From here you can search these documents. Enter |
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+ your search terms below. |
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+ </p> |
|
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+ <form role="form"> |
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+ <div class="form-group"> |
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+ <input type="text" class="form-control" placeholder="Search..." id="mkdocs-search-query"> |
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+ </div> |
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+ </form> |
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+ <div id="mkdocs-search-results"></div> |
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+ </div> |
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+ <div class="modal-footer"> |
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+ </div> |
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+ </div> |
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+ </div> |
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+ </div> |
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+ </body> |
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+</html> |
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\ No newline at end of file |
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@@ -192,7 +192,7 @@ |
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}, |
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{
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"location": "/featuredArticles/", |
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- "text": "Let us know if you have published using \nggtree\n and your publication will be featured here.\n\n\n\n\n\n\n\n\n\n\n\n\n\n .rChart {\n display: block;\n margin-left: auto; \n margin-right: auto;\n width: 800px;\n height: 300px;\n } \n \n\n\n\n\n\n\n\n var chartParams = {\n \"element\": \"chart150268e55865\",\n\"width\": 800,\n\"height\": 400,\n\"xkey\": \"year\",\n\"ykeys\": [\n \"cites\" \n],\n\"data\": [\n {\n \"year\": 2016,\n\"cites\": 1,\n\"pubid\": \"HtEfBTGE9r8C\" \n} \n],\n\"id\": \"chart150268e55865\",\n\"labels\": \"cites\" \n},\n chartType = \"Bar\"\n new Morris[chartType](chartParams)\n\n\n\n\n 2016\n\n\nLack of GLYCOLATE OXIDASE 1, but not GLYCOLATE OXIDASE 2, attenuates the photorespiratory phenotype of CATALASE2-deficient \nArabidopsis\n\n\nPlant Physiology\n May. 2016 \n\n\n\n\nRange overlap drives chromosome inversion fixation in passerine birds\n\n\nbioRxiv\n May. 2016 \nhttp://dx.doi.org/10.1101/053371\n\n\n\n\nPhenotypic and Genotypic Characteristics of Shiga Toxin-Producing Escherichia coli Isolated from Surface Waters and Sediments in a Canadian Urban-Agricultural Landscape\n\n\nFront. Cell. Infect. Microbiol.\n Apr. 2016 \nhttp://dx.doi.org/10.3389%2Ffcimb.2016.00036\n\n\n\n\nWs-2\n Introgression in a Proportion of \nArabidopsis thaliana Col-0\n Stock Seed Produces Specific Phenotypes and Highlights the Importance of Routine Genetic Verification\n\n\nPlant Cell\n Mar. 2016 \nhttp://dx.doi.org/10.1105/tpc.16.00053\n\n\n\n\n 2015\n\n\nThe population genetics of drug resistance evolution in natural populations of viral, bacterial and eukaryotic pathogens\n\n\nMolecuar Ecology\n Dec. 2015 \nhttp://dx.doi.org/10.1111/mec.13474\n\n\n\n\nGenetic characterization of highly pathogenic H5 influenza viruses from poultry in Taiwan, 2015\n\n\nInfection, Genetics and Evolution\n Dec. 2015 \nhttp://dx.doi.org/10.1016/j.meegid.2015.12.006\n\n\n\n\nTrans-species polymorphism at antimicrobial innate immunity cathelicidin genes of Atlantic cod and related species\n\n\nPeerJ\n May 2015 \nhttps://doi.org/10.7717/peerj.976",
|
|
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+ "text": "Let us know if you have published using \nggtree\n and your publication will be featured here.\n\n\n\n\n\n\n\n\n\n\n\n\n\n .rChart {\n display: block;\n margin-left: auto; \n margin-right: auto;\n width: 800px;\n height: 300px;\n } \n \n\n\n\n\n\n\n\n var chartParams = {\n \"element\": \"chart24642708de9f\",\n\"width\": 800,\n\"height\": 400,\n\"xkey\": \"year\",\n\"ykeys\": [\n \"cites\" \n],\n\"data\": [\n {\n \"year\": 2016,\n\"cites\": 1,\n\"pubid\": \"HtEfBTGE9r8C\" \n} \n],\n\"id\": \"chart24642708de9f\",\n\"labels\": \"cites\" \n},\n chartType = \"Bar\"\n new Morris[chartType](chartParams)\n\n\n\n\n 2016\n\n\nLack of GLYCOLATE OXIDASE 1, but not GLYCOLATE OXIDASE 2, attenuates the photorespiratory phenotype of CATALASE2-deficient \nArabidopsis\n\n\nPlant Physiology\n May. 2016 \n\n\n\n\nRange overlap drives chromosome inversion fixation in passerine birds\n\n\nbioRxiv\n May. 2016 \nhttp://dx.doi.org/10.1101/053371\n\n\n\n\nPhenotypic and Genotypic Characteristics of Shiga Toxin-Producing Escherichia coli Isolated from Surface Waters and Sediments in a Canadian Urban-Agricultural Landscape\n\n\nFront. Cell. Infect. Microbiol.\n Apr. 2016 \nhttp://dx.doi.org/10.3389%2Ffcimb.2016.00036\n\n\n\n\nWs-2\n Introgression in a Proportion of \nArabidopsis thaliana Col-0\n Stock Seed Produces Specific Phenotypes and Highlights the Importance of Routine Genetic Verification\n\n\nPlant Cell\n Mar. 2016 \nhttp://dx.doi.org/10.1105/tpc.16.00053\n\n\n\n\n 2015\n\n\nThe population genetics of drug resistance evolution in natural populations of viral, bacterial and eukaryotic pathogens\n\n\nMolecuar Ecology\n Dec. 2015 \nhttp://dx.doi.org/10.1111/mec.13474\n\n\n\n\nGenetic characterization of highly pathogenic H5 influenza viruses from poultry in Taiwan, 2015\n\n\nInfection, Genetics and Evolution\n Dec. 2015 \nhttp://dx.doi.org/10.1016/j.meegid.2015.12.006\n\n\n\n\nTrans-species polymorphism at antimicrobial innate immunity cathelicidin genes of Atlantic cod and related species\n\n\nPeerJ\n May 2015 \nhttps://doi.org/10.7717/peerj.976",
|
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"title": "Featured Articles" |
| 197 | 197 |
}, |
| 198 | 198 |
{
|
| ... | ... |
@@ -230,6 +230,11 @@ |
| 230 | 230 |
"text": "", |
| 231 | 231 |
"title": "GOSemSim" |
| 232 | 232 |
}, |
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+ {
|
|
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+ "location": "/meshes/", |
|
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+ "text": "", |
|
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+ "title": "meshes" |
|
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+ }, |
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{
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"location": "/ReactomePA/", |
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"text": "", |
| ... | ... |
@@ -65,6 +65,12 @@ |
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<changefreq>daily</changefreq> |
| 66 | 66 |
</url> |
| 67 | 67 |
|
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+ <url> |
|
| 69 |
+ <loc>https://guangchuangyu.github.io/ggtree/meshes/</loc> |
|
| 70 |
+ <lastmod>2016-10-17</lastmod> |
|
| 71 |
+ <changefreq>daily</changefreq> |
|
| 72 |
+ </url> |
|
| 73 |
+ |
|
| 68 | 74 |
<url> |
| 69 | 75 |
<loc>https://guangchuangyu.github.io/ggtree/ReactomePA/</loc> |
| 70 | 76 |
<lastmod>2016-10-17</lastmod> |
| ... | ... |
@@ -36,10 +36,10 @@ Let us know if you have published using `ggtree` and your publication will be fe |
| 36 | 36 |
} |
| 37 | 37 |
</style> |
| 38 | 38 |
|
| 39 |
-<div id = 'chart150268e55865' class = 'rChart morris'></div> |
|
| 39 |
+<div id = 'chart24642708de9f' class = 'rChart morris'></div> |
|
| 40 | 40 |
<script type='text/javascript'> |
| 41 | 41 |
var chartParams = {
|
| 42 |
- "element": "chart150268e55865", |
|
| 42 |
+ "element": "chart24642708de9f", |
|
| 43 | 43 |
"width": 800, |
| 44 | 44 |
"height": 400, |
| 45 | 45 |
"xkey": "year", |
| ... | ... |
@@ -53,7 +53,7 @@ Let us know if you have published using `ggtree` and your publication will be fe |
| 53 | 53 |
"pubid": "HtEfBTGE9r8C" |
| 54 | 54 |
} |
| 55 | 55 |
], |
| 56 |
-"id": "chart150268e55865", |
|
| 56 |
+"id": "chart24642708de9f", |
|
| 57 | 57 |
"labels": "cites" |
| 58 | 58 |
}, |
| 59 | 59 |
chartType = "Bar" |