@@ -148,3 +148,4 @@ importFrom(magrittr,equals)

 importFrom(methods,show)

 importFrom(reshape2,melt)

 importFrom(stats4,plot)

+importMethodsFrom(Biostrings,width)

@@ -1,5 +1,6 @@

 CHANGES IN VERSION 1.1.7

 ------------------------

+ o add example of msaplot in vignette <2015-05-22, Fri>

  o msaplot for adding multiple sequence alignment <2015-05-22, Fri>

 CHANGES IN VERSION 1.1.6

@@ -74,6 +74,7 @@ gheatmap <- function(p, data, offset=0, width=NULL, low="green", high="red",

 ##' @return tree view

 ##' @export

 ##' @importFrom Biostrings readBStringSet

+##' @importMethodsFrom Biostrings width

 ##' @importFrom colorspace rainbow_hcl

 ##' @importFrom ggplot2 geom_segment

 ##' @importFrom ggplot2 geom_rect

new file mode 100644

@@ -0,0 +1,684 @@

+>A/Swine/Binh_Duong/03_08/2010

+MKTIIALSYILCLVFAQKFPGNDNSMATLCLGHHAVPNGTMVKTITNDQIEVTNATELVQSSSTGGICNSPHQILDGGNC

+TLIDALLGDPQCDGFQNKKWDLFVERSKAYSNCYPYDVPDYASLRSIVASSGTLEFNSENFNWTGVTQNGKSSSCKRGSD

+SSFFSRLNWLTHLNYKYPALKVTMPNNEKFDKLYIWGVHHPGTYNDQISLYAQASGIITVSTKRNQQTVIPNIGSRRDIP

+SRISIYWTIVKPGDILLINSTGNLIPPRGYFKIQSGRSSIMRSDAPIGKCNSECITPNGSIPNDKPFQNVNRITYGACPR

+YVKQNTLKLATGMRNVPEKQTRGIFGAIAGFIENGWEGMVDGWYGFRHKNSEGMQAADLKSTQAAINQINGKLNRLIGKT

+NEKFHQIEKEFSEVEGRIQDLEKYVEDTKIDLWSYNAELLVALENQHTIDLTDSEMNKLFERTKKQLRENAEDMGNGCFK

+IYHKCDNACIGSIRNGTYDHDIYRDEALNNRFQIKGVELKAGYKDWILWISFAISCFLLCVVLLGFIMWACQKGNIRCNI

+CI

+>A/Swine/Binh_Duong/03_10/2010

+MKTIIALSYILCLVFAQKFPGNDNSMATLCLGHHAVPNGTMVKTITNDQIEVTNATELVQSSSTGGICNSPHQILDGGNC

+TLIDALLGDPQCDGFQNKKWDLFVERSKAYSNCYPYDVPDYASLRSIVASSGTLEFNSENFNWTGVTQNGKSSSCKRGSD

+SSFFSRLNWLTHLNYKYPALKVTMPNNEKFDKLYIWGVHHPGTYNDQISLYAQASGIITVSTKRNQQTVIPNIGSRRDIP

+SRISIYWTIVKPGDILLINSTGNLIAPRGYFKIQSGRSSIMRSDAPIGKCNSECITPNGSIPNDKPFQNVNRITYGACPR

+YVKQNTLKLATGMRNVPEKQTRGIFGAIAGFIENGWEGMVDGWYGFRHKNSEGMQAADLKSTQAAINQINGKLNRLIGKT

+NEKFHQIEKEFSEVEGRIQDLEKYVEDTKIDLWSYNAELLVALENQHTIDLTDSEMNKLFERTKKQLRENAEDMGNGCFK

+IYHKCDNACIGSIRNGTYDHDIYRDEALNNRFQIKGVELKAGYKDWILWISFAISCFLLCVVLLGFIMWACQKGNIRCNI

+CI

+>A/Swine/HK/2503/2011

+MKTIIALSYILCLVFAQKFPGNDNSMATLCLGHHAVPNGTMVKTITNDQIEVTNATELVQSSSTGGICNSPYQILDGGNC

+TLIDALLGDPQCDGFQNKKWDLFIERSKAYSNCYPYDVPDYSSLRSIVASSGTLEFNNESFNWTGVTQNGKSASCKRGSD

+NSFFSRLNWLTHLNYKYPALKVTMPNNEKFDKLYIWGAHHPSTYSDQISLYAQASGIITVSTKRTQQTVIPNIGSRRDIP

+SRISIYWTIVKPGDILLINSTGNLIAPRGYFKIQSGKSSIMRSDAPIGKCNSECITPNGSIPNDKPFQNVNRITYGACPR

+YVKQNTLKLATGMRNVPEKQTRGIFGAIAGFIENGWEGMVDGWYGFRHQNSEGMQAADLKSTQAAINQINGKLNRLIGKT

+NEKFHQIEKEFSEVEGRIQDLEKYVEDTKIDLWSYNAELLVALENQHTIDLTDSEMNKLFERTKKQLRENAEDMGNGCFK

+IYHKCDNACIGSIRNGTYDHDVYRDEALNNRFQIKGVELKAGYKDWILWISFAISCFLLCVVLLGFIMWACQKGNIRCNI

+CI

+>A/Swine/HK_NS2439/2011

+MKTIIALSYILCLVFAQKFPGNDNSMATLCLGHHAVPNGTMVKTITNDQIEVTNATELVQSSSTGGICNSPYQILDGGNC

+TLIDALLGDPQCDGFQNKKWDLFVERSKAHSNCYPYDVPDYASLRSIVASSGTLEFNNESFNWTGVTQNGKSASCKRGSD

+NSFFSRLNWLTHLNYKYPALKVTMPNNEKFDKLYIWGAHHPSTYSDQISLYAQASGIITVSTKRTQQTVIPNIGSRRDIP

+SRISIYWTIVKPGDILLINSTGNLIAPRGYFKIQSGKSSIMISDAPIGKCNSECITPNGSIPNDKPFQNVNRITYGACPR

+YVKQNTLKLATGMRNVPEKQTRGIFGAIAGFIENGWEGMVDGWYGFRHQNSEGMQAADLKSTQAAINQINGKLNRLIGKT

+NEKFHQIEKEFSEVEGRIQDLEKYVEDTKIDLWSYNAELLVALENQHTIDLTDSEMNKLFERTKKQLRENAEDMGNGCFK

+IYHKCDNACIGSIRNGTYDHDVYRDEALNNRFQIKGVELKAGYKDWILWISFAISCFLLCVVLLGFIMWACQKGNIRCNI

+CI

+>A/Swine/GX_NS2783/2010

+MKTIIALSYILCLVFAQKFPGNDNSMATLCLGHHAVPNGTMVKTITNDQIEVTNATELVQSSSTGGICNSPYQILDGGNC

+TLIDALLGDPQCDGFQNKKWDLFVERSKAYSNCYPYDMPDYASLRSIVASSGTLEFNNESFNWTGVTQNGKSASCKRGSD

+NSFFSRLNWLTHLNYKYPALKVTMPNNEKFDKLYIWGAHHPSTYNDQISLYAQASGIITVSTKRTQQTVIPNIGSRRDIP

+SRISIYWTIVKPGDILLINSTGNLIAPRGYFKIQSGKSSIMRSDAPIGKCNSECITPNGSIPNDKPFQNVNRITYGACPR

+YVKQNTLKLATGMRNVPEKQTRGIFGAIAGFIENGWEGMVDGWYGFRHQNSEGMQAADLKSTQAAINQINGKLNRLIGKT

+NEKFHQIEKEFSEVEGRIQDLEKYVEDTKIDLWSYNAELLVALENQHTIDLTDSEMNKLFERTKKQLRENAEDMGNGCFK

+IYHKCDNACIGSIRNGTYDHDVYRDEALSNRFQIKGVELKAGYKDWILWISFAISCFLLCVVLLGFIMWACQKGNIRCNI

+CI

+>A/Swine/GD/3767/2011

+MKTIIALSYILCLVFAQKFPGNDNNMAMLCLGHHAVPNGTMVKTITNDQIEVTNATELVQSSSTGGICNSPYQILDGGNC

+TLIDALLGDPQCDGFQNKKWDLFVERSKAYSNCYPYDVPDYASLRSIVASSGTLEFNNESFNWTGVTQNGKSASCKRGSD

+NSFFSRLNWLTHLNYKYPALKVTMPNNEKFDKLYIWGAHHPGTYNDQISLYAQASGIITVSTKRTQQTVIPNIGSRRDIP

+SRISIYWTIVKPGDILLINSTGNLIAPRGYFKLQNEKSSIMRSDAPIGKCNSECITPNGSIPNDRPFQNVNRITYGACPR

+YVKQNTLKLATGMRNVPEKQTRGIFGAIAGFIENGWEGMVDGWYGFRHQNSEGMQAADLKSTQAAINQINGKLNRLIGKT

+NEKFHQIEKEFSEVEGRIQDLEKYVEDTKIDLWSYNAELLVALENQHTIDLTDSEMNKLFERTKKQLRENAEDMGNGCFK

+IYHKCDNACIGSIRNGTYDHDVYRDEALSNRFQIKGVELKAGYKDWILWISFAISCFLLCVVLLGFIMWACQKGNIRCNI

+CI

+>A/Swine/GX/2242/2011

+MKTIIALSYILCLVFAQKFPGNDNNMAMLCLGHHAVPNGTMVKTITNDQIEVTNATELVQSSSTGGICNSPYQILDGGNC

+TLIDALLGDPQCDGFQNKKWDLFVERSKAYSNCYPYDVPDYASLRSIVASSGTLEFNNESFNWTGVTQNGKSASCKRGSD

+NSFFSRLNWLTHLNYKYPALKVTMPNNEKFDKLYIWGAHHPGTYNDQISLYAQASGIITVSTKRTQQTVIPNIGSRRDIP

+SRISIYWTIVKPGDILLINSTGNLIAPRGYFKLQNGKSSIMRSDAPIGKCNSECITPNGSIPNDRPFQNVNRITYGTCPR

+YVKQNTLKLATGMRNVPEKQTRGIFGAIAGFIENGWEGMVDGWYGFRHQNSEGMQAADLKSTQAAINQINGKLNRLIGKT

+NEKFHQIEKEFSEVEGRIQDLEKYVEDTKIDLWSYNAELLVALENQHTIDLTDSEMNKLFERTKKQLRENAEDMGNGCFK

+IYHKCDNACIGSIRNGTYDHDVYRDEALSNRFQIKGVELKAGYKDWILWISFATSCFLLCVVLLGFIMWACQKGNIRCNI

+CI

+>A/Swine/GX/2803/2011

+MKTIIALSYILCLVFAQKFPGNDNSMATLCLGHHAVPNGTMVKTITNDQIEVTNATELVQSSSTGGLCNSPYQILDGGNC

+TLIDALLGDPQCDGFQNKKWDLFVERSKAYSNCYPYDVPDYASLRSIVASSGTLEFNNESFNWTGVTQNGKSASCKRGSD

+NSFFSRLNWLTHLNYKYPALKVTMPNNEKFDKLYIWGAHHPGTYNDQISLYAQASGIITVSTKRTQQTVIPNIGSRRDIP

+SRISIYWTIVKPGDILLINSTGNLIAPRGYFKIQSGKSSIMRSDAPIGKCNSECITPNGSIPNDKPFQNVNRITYGACPR

+YVKQNTLKLATGMRNVPEKQTRGIFGAIAGFIENGWEGMVDGWYGFRHQNSEGMQAADLKSTQAAINQINGKLNRLIGKT

+NEKFHQIEKEFSEVEGRIQDLEKYVEDTKIDLWSYNAELLVALENQHTIDLTDSEMNKLFERTKKQLRENAEDMGNGCFK

+IYHKCDNACIGSIRNGTYDHDVYRDEAFSNRFQIKGVELKAGYKDWILWISFAISCFLLCVVLLGFIMWACQKGNIRCNI

+CI

+>A/Swine/GX_NS3106/2011

+MKTIIALSYILCLVFAQKFPGNDNSMATLCLGHHAVPNGTMVKTITNDQIEVTNATELVQSSSTGGLCNSPYQILDGGNC

+TLIDALLGDPQCDGFQNKKWDLFVERSKAYSNCYPYDVPDYASLRSIVASSGTLEFNNESFNWTGVTQNGKSASCKRGSD

+NSFFSRLNWLTHLNYKYPALKVTMPNNEKFDKLYIWGAHHPGTYNDQISLYAQASGIITVSTKRTQQTVIPNIGPRRDIP

+SRISIYWTIVKPGDILLINSTGNLIAPRGYFKIQSGKSSIMRSDAPIGKCNSECITPNGSIPNDKPFQNVNRITYGACPR

+YVKQNTLKLATGMRNVPEKQTRGIFGAIAGFIENGWEGMVDGWYGFRHQNSEGMQAADLKSTQAAINQINGKLNRLIGKT

+NEKFHQIEKEFSEVEGRIQDLEKYVEDTKIDLWSYNAELLVALENQHTIDLTDSEMNKLFERTKKQLRENAEDMGNGCFK

+IYHKCDNACIGSIRNGTYDHDVYRDEAFSNRFQIKGVELEAGYKDWILWISFAISCFLLCVVLLGFIMWACQKGNIRCNI

+CI

+>A/Swine/GX_NS3108/2011

+MKTIIALSYILCLVFAQKFPGNDNSMATLCLGHHAVPNGTMVKTITNDQIEVTNATELVQSSSTGGLCNSPYQILDGGNC

+TLIDALLGDPQCDGFQNKKWDLFVERSKAYSNCYPYDVPDYASLRSIVASSGTLEFNNESFNWTGVTQNGKSASCKRGSD

+NSFFSRLNWLTHLNYKYPALKVTMPNNEKFDKLYIWGAHHPGTYNDQISLYAQASGIITVSTKRTQQTVIPNIGSRRDIP

+SRISIYWTIVKPGDILLINSTGNLIAPRGYFKIQSGKSSIMRSDAPIGKCNSECITPNGSIPNDKPFQNVNRITYGACPR

+YVKQNTLKLATGMRNVPEKQTRGIFGAIAGFIENGWEGMVDGWYGFRHQNSEGMQAADLKSTQAAINQINGKLNRLIGKT

+NEKFHQIEKEFSEVEGRIQDLEKYVEDTKIDLWSYNAELLVALENQHTIDLTDSEMNKLFERTKKQLRENAEDMGNGCFK

+IYHKCDNACIGSIRNGTYDHDVYRDEAFSNRFQIKGVELKAGYKDWILWISFAISCFLLCVVLLGFIMWACQKGNIRCNI

+CI

+>A/Swine/HK_NS2810/2011

+MKTIIALSYILCLVFAQKFPGNDNNMAMLCLGHHAVPNGTMVKTITNDQIEVTNATELVQSSSTGGICNSPYQILDGGNC

+TLIDALLGDPQCDGFQNKKWDLFVERSKAYSNCYPYDVPDYASLRSIVASSGTLEFNNESFNWTGVTQNGKSASCKRGSD

+NSFFSRLNWLTHLNYKYPALKVTMPNNEKFDKLYIWGAHHPGTYNDQISLYAQASGMITVSTKRTQQTVIPNIGSRRDIP

+SRISIYWTIVKPGDILLINSTGNLIAPRGYFKLQNGKSSIMRSDAPIGKCSSECITPNGSIPNDRPFQNVNRITYGACPR

+YVKQNTLKLATGMRNVPDKQTRGIFGAIAGFIENGWEGMIDGWYGFRHQNSEGMQAADLKSTQAAINQINGKLNRLIGKT

+NEKFHQIEKEFSEVEGRIQDLEKYVEDTKIDLWSYNAELLVALENQHTIDLTDSEMNKLFERTKKQLRENAEDMGNGCFK

+IYHKCDNACIGSIRNGTYDHDVYRDEALSNRFQIKGVELKAGYKDWILWISFAISCFLLCVVLLGFIMWACQKGNIRCNI

+CI

+>A/Swine/HK/2857/2011

+MKTIIALSYILCLVFAQKFPGNDNSMATLCLGHHAVPNGTMVKTIANDQIEVTNATELVQSSSTGGICNSPHQILDGGNC

+TLIDALLGDPQCDGFQNKKWDLFVERSKAYSNCYPYDVPDYTSLRSIVASSGTLEFNNESFNWTGVTQNGKSASCKRGSD

+NSFFSRLNWLTHLNYKYPALKVAMPNNEKFDKLYIWGVHHPGTYNDQISLYAQASGIITVSTKRNQQTVIPNIGSRRDIP

+SRISIYWTIVKPGDILLINSTGNLIAPRGYFKIQSGKSSIMRSDAPIGKCNSECITPNGSIPNDKPFQNVNRITYGACPR

+YVKQNTLKLATGMRNVPEKQTRGIFGAIAGFIENGWEGMVDGWYGFRHQNSEGMQAADLKSTQAAVNQINGKLNRLIGKT

+NEKFHQIEKEFSEVEGRIQDLEKYVEDTKIDLWSYNAELLVALENQHTIDLTDSEMDKLFERTKKQLRENAEDMGNGCFK

+IYHKCDNACIGSIRNGTYDHDIYRDEALSNRFQIKGVELKAGYKDWILWISFAISCFLLCVVLLGFIMWACQKGNIRCNI

+CI

+>A/Swine/HK/3238/2011

+MKTIIALSYILCLVFAQKFPGNDNNMAMLCLGHHAVPNGTMVKTITNDQIEVTNATELVQSSSTGGICNSPYQILDGGNC

+TLIDALLGDPQCDGFQNKKWDLFVERSKAYSNCYPYDVPDYASLRSIVASSGTLEFNNESFNWTGVTQNGKSASCKRGSD

+NSFFSRLNWLTHLNYKYPALKVTMPNNEKFDKLYIWGAHHPGTYNDQISLYAQASGIITVSTKRTQQTVIPNIGSRRDIP

+SRISIYWTIVKPGDILLINSTGNLIAPRGYFKLQNGKSSIMRSDAPIGKCNSECITPNGSIPNDRPFQNVNRITYGACPR

+YVKQNTLKLATGMRNVPEKQTRGIFGAIAGFIENGWEGMVDGWYGFRHQNSEGMQAADLKSTQAAINQINGKLNRLIGKT

+NEKFHQIEKEFSEVEGRIQDLEKYVEDTKIDLWSYNAELLVALENQHTIDLTDSEMNKLFERTKKQLRENAEDMGNGCLK

+IYHKCDNACIGSIRNGTYDHDVYRDEALSNRFQIKGVELKAGYKDWILWISFAISCFLLCVVLLGFIMWACQKGNIRCNI

+CI

+>A/Swine/HK/3700/2011

+MKTIIALSYILCLVFAQKFPGNDNNMAMLCLGHHAVPNGTMVKTITNDQIEVTNATELVQSSSTGGICNSPYQILDGGNC

+TLIDAILGDPQCDGFQNKKWDLFVERSKAYSNCYPYDVPDYASLRSIVASSGTLEFNNESFNWTGVTQNGKSASCKRGSD

+NSFFSRLNWLTHLNYKYPALKVTMPNNEKFDKLYIWGAHHPGTYNDQISLYAQASGIITVSTKRTQQTVIPNIGSRRDIP

+SRISIYWTIVKPGDILLINSTGNLIAPRGYFKLQNGKSSIMRSDAPIDKCNSECITPNGSIPNDRPFQNVNRITYGACPR

+YVKQNTLKLATGMRNVPEKQTRGIFGAIAGFIENGWEGMVDGWYGFRHQNSEGMQAADLKSTQAAINQINGKLNRLIGKT

+NEKFHQIEKEFSEVEGRIQDLEKYVEDTKIDLWSYNAELLVALENQHTIDLTDSEMNKLFERTKKQLRENAEDMGNGCFK

+IYHKCDNACIGSIRNGTYDHDVYRDEALSNRFQIKGVELKAGYKDWILWISFAISCFLLCVVLLGFIMWACQKGNIRCNI

+CI

+>A/Swine/HK/168/2012

+MKTIIALSYILCLVFAQKFPGNDNNMAMLCLGHHAVPNGTMVKTITNDQIEVTNATELVQSSSTGGICNSPYQILDGGNC

+TLIDAILGDPQCDGFQNKKWDLFVERSKAYSNCYPYDVPDYASLRSIVASSGTLEFNNESFNWTGVTQNGKSASCKRGSD

+NSFFSRLNWLTHLNYKYPALKVTMPNNEKFDKLYIWGAHHPGTYNDQISLYAQASGIITVSTKRTQQTVIPNIGSRRDIP

+SRISIYWTIVKPGDILLINSTGNLIAPRGYFKLQNGKSSIMRSDAPIGKCNSECITPNGSIPNDRPFQNVNRITYGACPR

+YVKQNTLKLATGMRNVPEKQTRGIFGAIAGFIENGWEGMVDGWYGFRHQNSEGVQAADLKSTQAAINQINGKLNRLIGKT

+NEKFHQIEKEFSEVEGRIQDLEKYVEDTKIDLWSYNAELLVALENQHTIDLTDSEMNKLFERTKKQLRENAEDMGNGCFK

+IYHKCDNACIGSIRNGTYDHDVYRDEALSNRFQIKGVELKAGYKDWILWISFAISCFLLCVVLLGFIMWACQKGNIRCNI

+CI

+>A/Swine/HK/459/2012

+MKTIIALSYIPCLVFAQKFPGNDNNMAMLCLGHHAVPNGTMVKTITNDQIEVTNATELVQSSSTGGICNSPYQVLDGGNC

+TLIDALLGDPQCDGFQNKKWDLFVERSKAYSNCYPYDVPDYASLRSIVASSGTLEFNNESFNWTGVTQNGKSASCKRGSD

+NSFFSRLNWLTHLNYKYPALKVTMPNNEKFDKLYIWGAHHPGTYNDQISLYAQASGIITVSTKRTQQTVIPNIGSRRDIP

+SRISIYWTIVKPGDILLINSTGNLIAPRGYFKLQNGKSSIMRSDAPIGKCDSECITPNGSIPNDRPFQNVNRITYGACPR

+YVKQNTLKLATGMRNVPEKQTRGIFGAIAGFIENGWEGMVDGWYGFRHQNSEGMQAADLKSTQAAINQINGKLNRLIGKT

+NEKFHQIEKEFSEVEGRIQDLEKYVEDTKIDLWSYNAELLVALENQHTIDLTDSEMNKLFERTKKQLRENAEDMGNGCFK

+IYHKCDNACIGSIRNGTYDHDVYRDEALSNRFQIKGVELKAGYKDWILWISFAISCFLLCVVLLGFIMWACQKGNIRCNI

+CI

+>A/Swine/HK/1071/2012

+MKTIIALSYILCLVFAQKFPGNDNSMATLCLGHHAVPNGTMVKTITNDQIEVTNATELVQSSSTGGICNSPHQILDGGNC

+TLIDALLGDPQCDGFQNKKWDLFVERSKAYSNCYPYDVPDYTSLRSIVASSGTLEFNNESFNWTGVTQNGKSASCKRGSD

+NSFFSRLNWLTHLNYKYPALKVTMPNNEKFDKLYIWGVHHPGTYNDQISLYAQASGIITVSTKRNQKTVIPNIGSRRDIP

+SRISIYWTIVKPGDILLINSTGNLIAPRGYFKIQSGKSSIMRSDAPIGKCNSECITPNGSIPNDKPFQNVNRITYGACPR

+YVKQNTLKLATGMRNVPEKQTRGIFGAIAGFIENGWEGMVDGWYGFRHQNSEGMQAADLKSTQAAVDQINGKLNRLIGKT

+NEKFHQIEKEFSEVEGRIQDLEKYVEDTKIDLWSYNAELLVALENQHTIDLTDSEMDKLFERTKKQLRENAEDMGNGCFK

+IYHKCDNACIGSIRNGTYDHDIYRDEALSNRFQIKGVELKAGYKNWILWISFAISCFLLCVVLLGFIMWACQKGNIRCNI

+CI

+>A/Swine/HK/1284/2012

+MKTIIALSYILCLVFAQKFPGNDNNMAMLCLGHHAVPNGTMVKTITNDQIEVTNATELVQSSSTGGICNNPYQILDGGNC

+TLIDALLGDPQCDGFQNKKWDLFVERSKAYSNCYPYDVPDYASLRSIVASSGTLEFNNESFNWTGVTQNGKSASCKRGSD

+NSFFSRLNWLTHLNYKYPALKVTMPNNEKFDKLYIWGAHHPGTYNDQISLYAQASGIITVSTKRTQQTVIPNIGSRRDIP

+SRISIYWTIVKPGDILLINSTGNLIAPRGYFKLQNGKSSIMRSDAPIGKCNSECITPNGSIPNDRPFQNVNRITYGACPR

+YVKQNTLKLATGMRNVPEKQTRGIFGAIAGFIENGWEGMVDGWYGFRHQNSEGMQAADLKSTQAAINQINGKLNRLIGKT

+NEKFHQIEKEFSEVEGRIQDLEKYVEDTKIDLWSYNAELLVALENQHTIDLTDSEMNKLFERTKKQLRENAEDMGNGCFK

+IYHKCDNACIGSIRNGTYDHDVYRDEALSNRFQIKGVELKAGYKDWILWISFAISCFLLCVVLLGFIMWACQKGNIRCNI

+CI

+>A/Swine/GX/650/2012

+MKTIIALSYILCLVFAQKFPGNDNNMAMLCLGHHAVPNGTMVKTITNDQIEVTNATELVQSSSTGGICNSPYQILDGGNC

+TLIDALLGDPQCDSFQNKKWDLFVERSKAYSNCYPYDVPDYASLRSIVASSGTLEFNNESFNWTGVTQNGKSASCKRGSD

+NSFFSRLNWLTHLNYKYPALKVTMPNNEKFDKLYIWGAHHPGTYNDQISLYAQASGIITVSTKRTQQTVIPNIGSRRDIP

+SRISIYWTIVKPGDILLINSTGNLIAPRGYFKLQNGKSSIMRSDAPIGKCNSECITPNGSIPNDRPFQNVNRITYGTCPR

+YVKQNTLKLATGMRNVPEKQTRGIFGAIAGFIENGWEGMVDGWYGFRHRNSEGMQAADLKSTQAAINQINGKLNRLIGKT

+NEKFHQIEKEFSEVEGRIQDLEKYVEDTKIDLWSYNAELLVALENQHTIDLTDSEMNKLFERTKKQLRENAEDMGNGCFK

+IYHKCDNACIGSIRNGTYDHDVYRDEALSNRFQIKGVELKAGYKDWILWISFAISCFLLCVVLLGFIMWACQKGNIRCNI

+CI

+>A/Swine/GX_NS1409/2012

+MKTIIALSYILCLVFAQKFPGNDNNMAMLCLGHHAVPNGTMVKTITNDQIEVTNATELVQNSSTGGICNSPYQILDGGNC

+TLIDALLGDPQCDGFQNKKWDLFVERSKAYSNCYPYDVPDYASLRSIVASSGTLEFNNESFNWTGVTQNGKSASCKRGSD

+NSFFSRLNWLTHLNYKYPALKVTMPNNEKFDKLYIWGAHHPGTYNDQISLYAQASGIITVSTKRTQQTVIPNIGSRRDIP

+SRISIYWTIVKPGDILLINSTGNLIAPRGYFKLQNGKSSIMRSDAPIGKCNSECITPNGSIPNDRPFQNVNRITYGTCPR

+YVKQNTLKLATGMRNVPEKQTRGIFGAIAGFIENGWEGMVDGWYGFRHQNSEGMQAADLKSTQAAINQINGKLNRLIGKT

+NEKFHQIEKEFSEVEGRIQDLEKYVEDTKIDLWSYNAELLVALENQHTIDLTDSEMNKLFERTKKQLRENAEDMGNGCFK

+IYHKCDNACIGSIRNGTYDHDVYRDEALSNRFQIKGVELKAGYKDWILWISFAISCFLLYVVLLGFIMWACQKGNIRCNI

+CI

+>A/Swine/GD/1599/2012

+MKTIIALSYILCLVFAQKFPGNDNNMAMLCLGHHAVPNGTMVKTITNDQIEVTNATELVQSSSTGGICNSPYQILDGGNC

+TLIDAILGDPQCDGFQNKKWDLFVERSKAYSNCYPYDVPDYASLRSIVASSGTLEFNSESFNWTGVTQNGKSASCKRGSD

+NSFFSRLNWLTHLNYKYPALKVTMPNNEKFDKLYIWGAHHPGTYNDQISLYAQASGIITVSTKRTQQTVIPNIGSRRDIP

+SRISIYWTIVKPGDILLINSTGNLIAPRGYFKLQNGKSSIMRSDAPIGKCNSECITPNGSIPNDRPFQNVNRITYGACPR

+YVKQNTLKLATGMRNVPEKQTRGIFGAIAGFIENGWEGMVDGWYGFRHQNSEGMQAADLKSTQAAINQINGKLNRLIGKT

+NEKFHQIEKEFSEVEGRIQDLEKYVEDTKIDLWSYNAELLVALENQHTIDLTDSEMNKLFERTRKQLRENAEDMGNGCFK

+IYHKCDNACIGSIRNGTYDHDVYRDEALSNRFQIKGVELKAGYKDWILWISFAISCFLLCVVLLGFIMWACQKGNIRCNI

+CI

+>A/Swine/HK/2454/2012

+MKTIIALSYILCLVFAQKFPGNDNSMATLCLGHHAVPNGTMVKTITNDQIEVTNATELVQSSSTGGICNSPHQILDGGNC

+TLIDALLGDPQCDGFQNKKWDLFVERSKAYSNCYPYDVPDYTSLRSIVASSGTLEFNNESFNWTGVTQNGKSASCKRGSD

+NSFFSRLNWLTHLNYKYPALKVTMPNNEKFDKLYIWGVHHPGTYNDQISLYAQASGIITVSTKRNQQTVIPNIGSRRDIP

+SRISIYWTIVKPGDILLINSTGNLIAPRGYFKIQSGKSSIMRSDAPIGKCNSECITPNGSIPNDKPFQNVNRITYGACPR

+YVKQNTLKLATGMRNVPEKQTRGIFGAIAGFIENGWEGMVDGWYGFRHQNSEGMQAADLKSTQAAVNQINGKLNRLIGKT

+NEKFHQIEKEFSEVEGRIQDLEKYVEDTKIDLWSYNAELLVALENQHTIDLTDSEMDKLFERTKKQLRENAEDMGNGCFK

+IYHKCDNACIGSIRNGTYDHDIYRDEALSNRFQIKGVELKAGHKDWILWISFAISCFLLCVVLLGFIMWACQKGNIRCNI

+CI

+>A/Swine/GX/508/2012

+MKTIIALSYILCLVFAQKFPGNDNNMAMLCLGHHAVPNGTMVKTITNDQIEVTNATELVQSSSTGGICNSPYQILDGGNC

+TLIDALLGDPQCDGFQNKKWDLFVERSKAYSNCYPYDVPDYASLRSIVASSGTLEFNNESFNWTGVTQNGKSASCKRGSD

+NSFFSRLNWLTHLNYKYPALKVTMPNNEKFDKLYIWGAHHPGTYNDQISLYAQASGIITVSTKRTQQTVIPNIGSRRDIP

+SRISIYWTIVKPGDILLINSTGNLIAPRGYFKLQNGKSSIMRSDAPIGKCNSECITPNGSIPNDRPFQNVNRITYGTCPR

+YVKQNTLKLATGMRNVPEKQTRGIFGAIAGFIENGWEGMVDGWYGFRHQNSEGMQAADLKSTQAAINQINGKLNRLIGKT

+NEKFHQIEKEFSEVEGRIQDLEKYVEDTKIDLWSYNAELLVALENQHTIDLTDSEMNKLFERTKKQLRENAEDMGNGCFK

+IYHKCDNACIGSIRNGTYDHDVYRDEALSNRFQIKGVELKAGYKDWILWISFATSCFLLCVVLLGFIMWACQKGNIRCNI

+CI

+>A/Swine/HK_NS1651/2012

+MKTIIALSYILCLVLAQKFPGNDNNRAMLCLGHHAVPNGTMVKTITNDQIEVTNATELVQSSSTGGICNSPYQILDGGNC

+TLIDALLGDPQCDGFQNKRWDLFVERSKAYSNCYPYEVPDYASLRSIVASSGTLEFNNESFNWTGVTQNGKSASCKRGFD

+NSFFSRLNWLTHLNYKYPALKVTMPNNEKFDKLYIWGAHHPGTYNDQISLYAQASGIITVSTKRTQQTVIPNIGSRRDIP

+SRISIYWTIVKPGDILLINSTGNLIAPRGYFKLQNGKSSIMRSDAPIGKCNSECITPNGSIPNDRPFQNVNRITYGACPR

+YVKQNTLKLATGMRNIPEKQTRGIFGAIAGFIENGWEGMVDGWYGFRHQNSEGMQAADLKSTQAAINQINGKLNRLIGKT

+NEKFHQIEKEFSEVEGRIQDLEKYVEDTKIDLWSYNAELLVALENQHTIDLTDSEMNKLFERTKKQLRENAEDMGNGCFK

+IYHKCDNACIGSIRNGTYDHDVYRDEALSNRFQIKGVELKAGYKDWILWISFAISCFLLCVVLLGFIMWACQKGNIRCNI

+CI

+>A/Swine/HK_NS2733/2012

+MKTIIALSYILCLVFAQKFPGNDNSMATLCLGHHAVPNGTMVKTITDDQIEVTNATELVQSSSTGGICNSPYQILDGGNC

+TLIDALLGDPQCDGFQNKKWDLFVERSKAYSNCYPYDVPDYASLRSIVASSGTLEFNNESFNWTGVTQNGKSASCKRGSD

+NSFFSRLNWLTHLNYKYPALKVTMPNNEKFEKLYIWGAHHPSTYSDQISLYAQASGIITVSTKRTQQTVIPNIGSRRDIP

+SRISIYWTIVKPGDILLINSTGNLIAPRGYFKIQSGKSSIMRSDAPIGKCNSECITPNGSIPNDKPFQNVNRITYGACPR

+YVKQNTLKLATGMRNVPEKQTRGIFGAIAGFIENGWEGMVDGWYGFRHQNSEGMQAADLKSTQAAINQINGKLNRLIGKT

+NEKFHQIEKEFSEVEGRIQDLEKYVEDTKIDLWSYNAELLVALENQHTIDLTDSEMNKLFERTKKQLRENAEDMGNGCFK

+IYHKCDNACIGSIRNGTYDHDVYRDEALNNRFQIKGVDLKAGYKDWVLWISFAISCFLLCVVLLGFIMWACQKGNIRCNI

+CI

+>A/Swine/HK/3280/2012

+MKTIIALSYILCLVFAQKFPGNDNNMAMLCLGHHAVPNGTMVKTITNDQIEVTNATELVQSSSTGGICNSPYQILDGGNC

+TLIDALLGDPQCDGFQNKKWDLFVERSKAYSNCYPYDVPDYASLRSIVASSGTLEFNNESFNWTGVTQNGKSASCKRGSD

+NSFFSRLNWLTHLNYKYPALKVTMPNNEKFDKLYIWGAHHPGTYNDQISLYAQASGIITVSTKRTQQTVIPNIGSRRDIP

+SRISIYWTIVKPGDILLINSTGNLIAPRGYFKLQNGKSSIMRSDAPIGKCNSECITPNGSIPNDRPFQNVNRITYGTCPR

+YVKQNTLKLATGMRNVPEKQTRGIFGAIAGFIENGWEGMVDGWYGFRHQNSEGMQAADLKSTQAAINQINGKLNRLIGKT

+NEKFHQIEKEFSEVEGRIQDLEKYVEDTKIDLWSYNAELLVALENQHTIDLTDSEMNKLFERTKKQLRENAEDMGNGCFK

+IYHKCDNACIGSIRNGTYDHDVYRDEALSNRFQIKGVELKAGYKDWILWISFAISCFLLCVVLLGFIMWACQKGNIRCNI

+CI

+>A/Swine/GX_NS2394/2012

+MKTIIALSYILCLVFAQKFPGNDNNMAMLCLGHHAVPNGTMVKTITNDQIEVTNATELVQSSSTGGICNSPYQILDGGNC

+TLIDALLGDPQCDGFQNKKWDLFVERSKAYSNCYPYDVPDYASLRSIVASSGTLEFNNESFNWTGVTQNGKSASCKRGSD

+NSFFSRLNWLTHSNYKYPALKVTMPNNEKFDKLYIWGAHHPGTYNDQISLYAQASGIITVSTKRTQQTVIPNIGSRRDIP

+SRISIYWTIVKPGDILLINSTGNLIAPRGYFKLQNGKSSIMRSDAPIGKCNSECITPNGSIPNDRPFQNVNRITYGACPR

+YVKQNTLKLATGMRNVPEKQTRGIFGAIAGFIENGWEGMVDGWYGFRHQNSEGMQAADLKSTQAAINQINGKLNRLIGKT

+NEKFHQIEKEFSEVEGRIQDLEKYVEDTKIDLWSYNAELLVALENQHTIDLTDSEMNKLFERTKKQLRENAEDMGNGCFK

+IYHKCDNACIGSIRNGTYDHDVYRDEALSNRFQIKGVELKAGYKNWILWISFAISCFLLCVVLLGFIMWACQKGNIRCNI

+CI

+>A/Swine/GD_NS2701/2012

+MKTIIALSYILCLVFAQKFPGNDNNMAMLCLGHHAVPNGTMVKTITNDQIEVTNATELVQNSSTGGICNSPYQILDGGNC

+TLIDALLGDPQCDGFQNKKWDLFVERSKAYSNCYPYDVPDYASLRSIVASSGTLEFNNESFNWTGVTQNGKSASCKRGSD

+NSFFSRLNWLTHLNYKYPALKVTMPNNEKFDKLYIWGAHHPGTYNDQISLYAQASGIITVSTKRTQQTVIPNIGSRRDIP

+SRISIYWTIVKPGDILLINSTGNLIAPRGYFKLQNGKSSIMRSDAPIGKCNSECITPNGSIPNDRPFQNVNRITYGTCPR

+YVKQNTLKLATGMRNVPEKQTRGIFGAIAGFIENGWEGMVDGWYGFRHQNSEGMQAADFKSTQAAINQINGKLNRLIGKT

+NEKFHQIEKEFSEVEGRIQDLEKYVEDTKIDLWSYNAELLVALENQHTIDLTDSEMNKLFERTKKQLRENAEDMGNGCFK

+IYHKCDNACIGSIRNGTYDHDVYRDEALSNRFQIKGVELKAGYKDWILWISFAISCFLLCVVLLGFIMWACQKGNIRCNI

+CI

+>A/Swine/GD_NS2892/2012

+MKTIIALSYILCLVFAQKFPGNDNNMAMLCLGHHAVPNGTMVKTITNDQIEVTNATELVQNSSTGGICNSPYQILDGGNC

+TLIDALLGDPQCDGFQNKKWDLFVERSKAYSNCYPYDVPDYASLRSIVASSGTLEFNNESFNWTGVTQNGKSASCKRGSD

+NSFFSRLNWLTHLNYKYPALKVTMPNNEKFDKLYIWGAHHPGTYNDQISLYAQESGIITVSTKRTQQTVIPNIGSRRDIP

+SRISIYWTIVKPGDILLINSTGNLIAPRGYFKLQNGKSSIMRSDAPISKCNSECITPNGSIPNDRPFQNVNRITYGTCPR

+YVKQNTLKLATGMRNVPEKQTRGIFGAIAGFIENGWEGMVDGWYGFRHQNSEGMQAADLKSTQAAINQINGKLNRLIGKT

+NEKFHQIEKEFSEVEGRIQDLEKYVEDTKIDLWSYNAELLVALENQHTIDLTDSEMNKLFERTKKQLRENAEDMGNGCFK

+IYHKCDNACIGSIRNGTYDHDVYRDEALSNRFQIKGVELKAGYKDWILWISFAISCFLLCVVLLGFIMWACQKGNIRCNI

+CI

+>A/Swine/GD/2919/2012

+MKTIIALSYILCLVFAQKFPGNDNNMAMLCLGHHAVPNGTMVKTITNDQIEVTNATELVQSSSTGGICNSPYQILDGGNC

+TLIDALLGDPQCDGFQNKKWDLFVERSKAYSNCYPYEVPDYASLRSIVASSGTLEFNNERFNWTGVTQNGKSASCKRGSD

+NSFFSRLNWLTHLNYKYPALKITMPNNEKFDKLYIWGAHHPGTYNDQISLYAQASGIITVSTKRTQQTVIPNIGSRRDIP

+SRISIYWTIVKPGDILLINSTGNLIAPRGYFKLQNGKSSIMRSDAPIGKCNSECITPNGSIPNDRPFQNVNRITYGACPR

+YVKQNTLKLATGMRNVPEKQTRGIFGAIAGFIENGWEGMVDGWYGFRHQNSEGMQAADLKSTQAAINQINGKLNRLIGKT

+NEKFHQIEKEFSEVEGRIQDLEKYVEDTKIDLWSYNAELLVALENQHTIDLTDSEMNKLFERTKKQLRENAEDMGNGCFK

+IYHKCDNACIGSIRNGTYDHDVYRDEALSNRFQIKGVELKAGYKDWILWISFAISCFLLCVVLLGFIMWACQKGNIRCNI

+CI

+>A/Swine/HK_NS2698/2012

+MKTIIALSYILCLVFAQKFPGNDNNMAMLCLGHHSVPNGTMVKTITNDQVEVTNATELVQNSSTGGICNSPYQILDGGNC

+TLIDALLGDPQCDGFQNKKWDLFVERSKAYSNCYPYDVPDYASLRSIVASSGTLEFKNESFNWTGVTQNGKSASCKRGSD

+NSFFSRLNWLTHLNYKYPALKVTMPNNEKFDKLYIWGAHHPGTYNDQISLYAQASGIITVSTKRTQQTVIPNIGSRRDIP

+SRISIYWTIVKPGDILLINSTGNLIAPRGYFKLQNGKSSIMRSDAPIDKCNSECITPNGSIPNDRPFQNVNRITYGACPR

+YVKQNTLKLATGMRNVPEKQTRGIFGAIAGFIENGWEGMVDGWYGFRHQNTEGMQAADLKSTQAAINQINGKLNRLIGKT

+NEKFHQIEKEFSEVEGRIQDLEKYVEDTKIDLWSYNAELLVALENQHTIDLTDSEMNKLFERTKKQLRENAEDMGNGCFK

+IYHKCDNACIGSIRNGTYDHDVYRDEALSNRFQIKGVELKAGYKDWILWISFAISCFLLCVVLLGFIMWACQKGNIRCNI

+CI

+>A/Ho_Chi_Minh/459.6/2010

+MKTIIALSYILCLVFAQKFPGNDNSMATLCLGHHAVPNGTMVKTITNDQIEVTNATELVQSSSTGGICNSPHQILDGGNC

+TLIDALLGDPQCDGFQNKKWDLFVERSKAYSNCYPYDVPDYASLRSIVASSGTLEFNNESFNWTGVTQNGKSASCKRGSD

+NSFFSRLNWLTHLNYKYPALKVTMPNNEKFDKLYIWGVHHPGTYNDQISLYAQASGIITVSTKRNQQTVIPNIGSRRDIP

+SRISIYWTIVKPGDILLINSTGNLIAPRGYFKIQSGKSSIMRSDAPIGKCNSECITPNGSIPNDKPFQNVNRITYGACPR

+YVKQNTLKLATGMRNVPEKQTRGIFGAIAGFIENGWEGMVDGWYGFRHQNSEGMQAADLKSTQAAINQINGKLNRLIGKT

+IEKFHQIEKEFSEVEGRIQDLEKYVEDTKIDLWSYNAELLVALENQHTIDLTDSEMDKLFERTKKQMRENAEDMGNGCFK

+IYHKCDNACIGSIRNGIYDRDIYRDEALSNRFQIKGVELKAGYKDWILWISFAISCFLLCVVLLGFIMWACQKGNLRCNI

+CI

+>A/Netherlands/42/2006

+MKTIIALSYILCLVFTQKLPGNDNSTATLCLGHHAVPNGTMVKTITNDQIEVTNATELVQSSSTGEICDSPHQILDGENC

+TLIDALLGDPQCDGFQNKKWDLFVERSKAHSNCYPYDVPDYASLRSLIASSGTLEFNNESFNWTGVTQNGTSSACKRRSD

+NSFFSRLNWLTHLKFKYPALNVTMPNNEEFDKLYIWGVHHPGTDNDQISLYAQASGRITVSTKRSQQTVIPNIGSRRDIP

+SRISIYWTIVKPGDILLINSTGNLIAPRGYFKIRSGKSSIMRSDAPIGKCNSGCITPNGSIPNDKPFQNVNRITYGACPR

+YVKQNTLKLATGMRNVPEKQTRGIFGAIAGFIENGWEGMVDGWYGFRHQNSEGIQAADLKSTQAAIDQINGKLNRLIGKT

+NEKFHQIEKEFSEVEGRIQDLEKYVEDTKIDLWSYNAELLVALENQHTIDLTDSEMNKLFERTKKQLRENAEDMGNGCFK

+IYHKCDNACIGSIRNGTYDHDVYRDEALNNRFQIKGVELKSGYKDWILWISFAISCFLLCVALLGFIMWACQKGNIRCNI

+CI

+>A/Malaysia/29890/2004

+MKTIIALSYILCLVFAQKLPGNDNSTATLCLGHHAVPNGTIVKTITNDQIEVTNATELVQSSSTGGICDSPHQILDGENC

+TLIDALLGDPQCDGFQNKKWDLFVERSKAYSNCYPYDVPDYASLRSLVASSGTLEFNNESFNWTGVTQNGTSSACKRRSN

+NSFFSRLNWLTHLKFKYPALNVTMPNNEKFDKLYIWGVHHPGTDNDQISLYAQASGRITVSTKRSQQTVIPNIGSRRDIP

+SRISIYWTIVKPGDMLLINSTGNLIAPRGYFKIRSGKSSIMRSDAPIGKCNSECITPNGSIPNDKPFQNVNRITYGACPR

+YIKQNTLKLATGMRNVPEKQTRGIFGAIAGFIENGWEGMVDGWYGFRHQNSEGTQAADLKSTQAAINQINGKLNRLIGKT

+NEKFHQIEKEFSEVEGRIQDLEKYVEDTKIDLWSYNAELLVALENQHTIDLTDSEMNKLFERTKKQLRENAEDMGNGCFK

+IYHKCDNACIGSIRNGTYDHDVYRDEALNNRFQIKGVELKSGYKDWIIWISFAISCFLLCVALLGFIMWACQKGNIRCNI

+CI

+>A/New_York/334/2004

+MKTIIALSYILCLVFAQKLPGNDNSTATLCLGHHAVPNGTIVKTITNDQIEVTNATELVQSSSTGGICDSPHQILDGENC

+TLIDALLGDPQCDGFQNKKWDLFVERSKAYSNCYPYDVPDYASLRSLVASSGTLEFNNESFNWTGVTQNGTSSACKRRSN

+NSFFSRLNWLTHLKFKYPALNVTMPNNEKYDKLYIWGVHHPGTDNDQISLYAQASGRITVSTKRSQQTVIPNIGSRRDIP

+SRISIYWTIVKPGDILLINSTGNLIAPRGYFKIRSGKSSIMRSDAPIGKCNSECITPNGSIPNDKPFQNVNRITYGACPR

+YVKQNTLKLATGMRNVPEKQTRGIFGAIAGFIENGWEGMVDGWYGFRHQNSEGIQAADLKSTQAAINQINGKLNRLIGKT

+NEKFHQIEKEFSEVEGRIQDLEKYVEDTKIDLWSYNAELLVALENQHTIDLTDSEMNKLFERTKKQLRENAEDMGNGCFK

+IYHKCDNACIGSIRNGTYDHDVYRDEALNNRFQIKGVELKSGYKDWILWISFAISCFLLCVALLGFIMWACQKGNIRCNI

+CI

+>A/New_York/463/2005

+MKTIIALSYILCLVFAQELPGNDNSTATLCLGHHAVPNGTIVKTITNDQIEVTNATELVQSSSTGGICDSPHQILDGENC

+TLIDALLGDPQCDGFQNKKWDLFVERSKAYSNCYPYDVPDYASLRSLVASSGTLEFNNESFNWTGVTQNGTSSACKRRSN

+NSFFSRLNWLTHLKFKYPALNVTMPNNEKFDKLYIWGVHHPGTDNDQTSLYAQASGRITVSTKRSQQTVIPNIGSRRDIP

+SRISIYWTIVKPGDILLINSTGNLIAPRGYFKIRSGKSSIMRSDAPIGKCNSECITPNGSIPNDKPFQNVNRITYGACPR

+YVKQNTLKLATGMRNVPEKQTRGIFGAIAGFIENGWEGMVDGWYGFRHQNSEGIQAADLKSTQAAINQINGKLNRLIGKT

+NEKFHQIEKEFSEVEGRIQDLEKYVEDTKIDLWSYNAELLVALENQHTIDLTDSEMNKLFERTKKQLRENAEDMGNGCFK

+IYHKCDNACIGSIRNGTYDHDVYRDEALNNRFQIKGVELKLGYKDWILWISFAISCFLLCVALLGFIMWACQKGNIRCNI

+CI

+>A/New_York/238/2005

+MKTIFALSYILCLVFAQKLPGNDNSTATLCLGHHAVPNGTIVKTITNDQIEVTNATELVQSSSTGGICDSPHQILDGENC

+TLIDALLGDPQCDGFQNKKWDLFVERSKAHSNCYPYDVPDYASLRSLVASSGTLEFNNESFNWTGVTQNGTSSACKRRSN

+NSFFSRLNWLTHLKFKYPALNVTMPNNENFDKLYIWGVHHPGTDNDQISLYAQASGRITVSTKRSQQTVIPNIGSRRDIP

+SRISIYWTIVKPGDILLINSTGNLIAPRGYFKIRSGKSSIMRSDAPIGKCNSECITPNGSIPNDKPFQNVNRITYGACPR

+YVKQNTLKLATGMRNVPEKQTRGIFGAIAGFIENGWEGMVDGWYGFRHQNSEGIQAADLKSTQAAINQINGKLNRLIGKT

+NEKFHQIEKEFSEVEGRIQDLEKYVEDTKIDLWSYNAELLVALENQHTIDLTDSEMNKLFERTKKQLRENAEDMGNGCFK

+IYHKCDNACIGSIRNGTYDHDVYRDEALNNRFQIKGVELKSGYKDWILWISFAISCFLLCVALLGFIMWACQKGNIRCNI

+CI

+>A/HaNoi/BM544/2004

+MKTIIALSYILCLVFAQKLPGNDNSTATLCLGHHAVPNGTLVKTITNDQIEVTNATELVQSSSTGGICDSPHQILDGENC

+TLIDALLGDPHCDGFQNKKWDLFVERSKAYSNCYPYDVPDYASLRSLVASSGTLEFNNESFNWTGVAQNGTSSACKRRSD

+KSFFSRLNWLHQLKYKYPALNVTMPNNEKFDKLYIWGVHHPGTDSDQISLYAQASGRITVSTKRSQQTVIPNIGSRRDVS

+SRISIYWTIVKPGDILFINSTGNLIAPRGYFKIRSGKSSIMRSDAPIDKCNSECITPNGSIPNDKPFQNVNRITYGACPR

+YVKQNTLKLATGMRNVPEKQTRGIFGAIAGFIENGWEGMVDGWYGFRHQNSEGTQAADLKSTQAAINQINGKLNRLIGKT

+NEKFHQIEKEFSEVEGRIQDLEKYVEDTKIDLWSYNAELLVALENQHTIDLTDSEMNKLFERTKKQLRENAEDMGNGCFK

+IYHKCDNACIGSIRNGTYDHDVYRDEALNNRFQIKGVELKSGYKDWILWISFAISCFLLCVALLGFIMWACQKGNIRCNI

+CI

+>A/Hong_Kong/HKU39/2004

+MKTIIALSYILCLVFAQKLPGNDNSTATLCLGHHAVPNGTIVKTITNDQIEVTNATELVQSSSTGGICDSPHQILDGENC

+TLIDALLGDPQCDGFQNKKWDLFVERSKAYSNCYPYDVPDYASLRSLVASSGTLEFNNESFNWTGVTQNGTSSACKRRSN

+NSFFSRLNWLTHLKFKYPALNVTMPNNEKFDKLYIWGVHHPGTDNDQISLYAQASGRITVSTKRSQQTVIPNIGSRRDIP

+SRISIYWTIVKPGDILLINSTGNLIAPRGYFKIRSGKSSIMRSDAPIGKCNSECITPNGSIPNDKPFQNVNRITYGACPR

+YVKQNTLKLATGMRNVPETQTRGIFGAIAGFIENGWEGMVDGWYGFRHQNSEGTQAADLKSTQAAINQINGKLNRLIGKT

+NEKFHQIEKEFSEVEGRIQDLEKYVEDTKIDLWSYNAELLVALENQHTIDLTDSEMNKLFERTKKQLRENAEDMGNGCFK

+IYHKCDNACIGSIRNETYDHDVYRDEALNNRFQIKGVELKSGYKDWILWISFAISCFLLCVALLGFIMWACQKGNIRCNI

+CI

+>A/Malaysia/29997/2004

+MKTIIALSYILCLVFAQKLPGNDNSTATLCLGHHAVPNGTIVKTITNDQIEVTNATELVQSSSTGGICDSPHQILDGENC

+TLIDALLGDPQCDGFQNKKWDLFVERSKAYSNCYPYDVPDYASLRSLVASSGTLEFNNESFDWTGVTQNGTSSSCKRRSN

+NSFFSRLNWLTHLKYKYPALNVTMPNNEKFDKLYIWGVHHPGTDSDQISLYAQASGRITVSTKRSQQTVIPNIGSRRDVS

+SRISIYWTIVKPGDILLINSTGNLIAPRGYFKIRSGKSSIMRSDAPIGKCNSECITPNGSIPNDKPFQNVNRITYGACPR

+YVKQNTLKLATGMRNVPEKQTRGIFGAIAGFIENGWEGMVDGWYGFRHQNSEGTQAADLKSTQAAINQINGKLNRLIGKT

+NEKFHQIEKEFSEVEGRIQDLEKYVEDTKIDLWSYNAELLVALENQHTIDLTDSEMNKLFERTKKQLRENAEDMGNGCFK

+IYHKCDNACIGSIRNGTYDHDVYRDEALNNRFQIKGVELKSGYKDWILWISFAISCFLLCVALLGFIMWACQKGNIRCNI

+CI

+>A/Western_Australia/38/2003

+MKTIIALSYILCLVFAQKLPGNDNSTATLCLGHHAVPNGTIVKTITNDQIEVTNATELVQSSSTGGICDSPHQILDGENC

+TLIDALLGDPQCDGFQNKKWDLFVERSKAYSNCYPYDVPDYASLRSLVASSGTLEFNNESFDWTGVTQNGTSSACKRGSN

+KSFFSRLNWLTHLKYKYPALNVTMPNNEKFDKLYIWGVHHPGTDSDQISLYAQASGRITVSTKRSQQTVIPNIGSRRDVS

+SRISIYWTIVKPGDILLINSTGNLIAPRGYFKIRSGKSSIMRSDAPIGKCNSECITPNGSIPNDKPFQNVNRITYGACPR

+YVKQNTLKLATGMRNVPEKQTRGIFGAIAGFIENGWEGMVDGWYGFRHQNSEGTQAADLKSTQAAINQINGKLNRLIGKT

+NEKFHQIEKEFSEVEGRIQDLEKYVEDTKIDLWSYNAELLVALENQHTIDLTDSEMNKLFERTKRQLRENAEDMGNGCFK

+IYHKCDNACIGSIRNGTYDHDVYRDEALNNRFQIKGVELKSGYKDWILWISFAISCFLLCVALLGFIMWACQKGNIRCNI

+CI

+>A/Moscow/328/2003

+MKTIIALSYILCLVFAQKLPGNDNSTATLCLGHHAVPNGTIVKTITNDQIEVTNATELVQSSSTGGICDSPHQILDGENC

+TLIDALLGDPQCDGFQNKKWDLFVERSEAYSNCYPYDVPDYASLRSLIASSGTLEFTNESFNWTGVTQNGTSSACKRRSN

+KSFFSRLNWLTHLKYKYPALNVTMPNNEKFDKLYIWGVHHPGTDSDQISLYAQASGRITVSTKRSQQTVIPNIGSRRDVS

+SRISIYWTIVKPGDILLINSTGNLIAPRGYFKIRSGKSSIMRSDAPIGKCNSECITPNGSIPNDKPFQNINRITYGACPR

+YVKQNTLKLATGMRNVPEKQTRGIFGAIAGFIENGWEGMVDGWYGFRHQNSEGTQAADLKSTQAAINQINGKLNRLIGKT

+NEKFHQIEKEFSEVEGRIQDLEKYVEDTKIDLWSYNAELLVALENQHTIDLTDSEMNKLFERTKEQLRENAEDMGNGCFK

+IYHKCDNACIGSIRNGTYDHDVYRDEALNNRFQIKGVELKSGYKDWILWISFAISCFLLCVVLLGFIMWACQKGNIRCNI

+CI

+>A/Hanoi/BM767/2003

+MKTIIALSYILCLVFAQKLPGNDNSTATLCLGHHAVPNGTIVKTITNDQIEVTNATELVQNSSTGGICDSPHQILDGENC

+TLIDALLGDPQCDGFQNKKWDLFVERSKAYSNCYPYDVPDYASLRSLVASSGTLEFNNESFNWTGVTQNGTSSACKRRSN

+KSFFSRLNWLTHLKYKYPALNVTMPNNEKFDKLYIWGVHHPGTDSDQISLYAQASGRITVSTKRSQQTVIPNIGSRRDVS

+SRISIYWTIVKPGDILLINSTGNLIAPRGYFKIRSGKSSIMRSDAPIGKCNSECITPNGSIPNDKPFQNVNRITYGACPR

+YVKQNTLKLATGMRNVPEKQTRGIFGAIAGFIENGWEGMVDGWYGFRHQNSEGTQAADLKSTQAAINQINGKLNRLIGKT

+NEKFHQIEKEFSEVEGRIQDLEKYVEDTKIDLWSYNAELLVALENQHTIDLTDSEMNKLFERTKKQLRENAEDMGNGCFK

+IYHKCDNACIGSIRNGTYDHDVYRDEALNNRFQIKGVELKSGYKDWILWISFAISCFLLCVALLGFIMWACQKGNIRCNI

+CI

+>A/California/UR06-0589/2007

+MKTIIALSYILCLVFAQKLPGIDNSTATLCLGHHAVPNGTIVKTITNDQIEVTNATELVQSSSTGGICDSPHQILDGENC

+TLIDALLGDPQCDGFQNKKWDLFVERSKAYSNCYPYDVPDYASLRSLVASSGTLEFNNESFNWTGVTQNGTSSACKRGSN

+NSFFSRLNWLTHSKFKYPALNVTMPNNEEFDKLYIWGVHHPGTDNDQIFLYAQASGRITVSTKRSQQTVIPNIGSRRNIP

+SRISIYWTIVKPGDILLINSTGNLIAPRGYFKIRSGKSSIMRSDAPIGKCNSECITPNGSIPNDKPFQNVNRITYGACPR

+YVKQNTLKLATGMRNVPEKQTRGIFGAIAGFIENGWEGMVDGWYGFRHQNSEGIQAADLKSTQAAIDQINGKLNRLIGKT

+NEKFHQIEKEFSEVEGRIQDLEKYVEDTKIDLWSYNAELLVALENQHTIDLTDSEMNKLFEKTKKQLRENAEDMGNGCFK

+IYHKCDNACIGSIRNGTYDHDVYRDEALNNRFQIKGVELKSGYKDWILWISFAISCFLLCVALLGFIMWACQKGNIRCNI

+CI

+>A/Brisbane/09/2006

+MKTIIALSYILCLVFAQKLPGNDNSTATLCLGHHAVPNGTIVKTITNDQIEVTNATELVQSSSTGGICDSPHQILDGENC

+TLIDALLGDPQCDGFQNKKWDLFVERSKAYSNCYPYDVPDYASLRSLVASSGTLEFNNESFNWTGVTQNGTSSACKRRSN

+NSFFSRLNWLTQLKFKYPALNVTMPNNEKFDKLYIWGVHHPVTDNDQIFLYAQASGRITVSTKRSQQTVIPNIGSRRNIP

+SRISIYWTIVKPGDILLINSTGNLIAPRGYFKIRSGKSSIMRSDAPIGKCNSECITPNGSIPNDKPFQNVNRITYGACPR

+YVKQNTLKLATGMRNVPEKQTRGIFGAIAGFIENGWEGMVDGWYGFRHQNSEGIQAADLKSTQAAIDQINGKLNRLIGKT

+NEKFHQIEKEFSEVEGRIQDLEKYVEDTKIDLWSYNAELLVALENQHTIDLTDSEMNKLFEKTKKQLRENAEDMGNGCFK

+IYHKCDNACIGSIRNGTYDHDVYRDEALNNRFQIKGVELKSGYKDWILWISFAISCFLLCVALLGFIMWACQKGNIRCNI

+CI

+>A/Tokyo/Ut-Sk-1/2007

+MKTIIALSYILCLVFAQKLPGNDNSTATLCLGHHAVPNGTIVKTITNDQIEVTNATELVQSSSTGGICDSPHQILDGENC

+TLIDALLGDPQCDGFQNKKWDLFVERSKAYSNCYPYDVPDYASLRSLVASSGTLEFNNERFNWTGVTQNGTSSACKRGSD

+NSFFSRLNWLTHLKFKYPALNVTMPNNEKFDKLYIWGVHHPGTDNDQIFLHAQASGRITVSTKRSQQTVIPNIGSRRNIP

+SRISIYWTIVKPGDILLINSTGNLIAPRGYFKIRSGKSSIMKSDAPIGKCNSECITPNGSIPNDKPFQNVNRITYGACPR

+YVKQNTLKLATGMRNVPEKQTRGIFGAIAGFIENGWEGMVDGWYGFRHQNSEGIQAADLKSTQAAINQINGKLNRLIGKT

+NEKFHQIEKEFSEVEGRIQDLEKYVEDTKIDLWSYNAELLVALENQHTIDLTDSEMNKLFERTKKQLRENAEDMGNGCFK

+IYHKCDNACIGSIRNGTYDHDVYRDEALNNRFQIKGVELKSGYKDWILWISFAISCFLLCVALLGFIMWACQKGNIRCNI

+CI

+>A/South_Carolina/NHRC0001/2006

+MKTIIALSYILCLVFAQKLPGNDNSTATLCLGHHAVPNGTIVKTITNDQIEVTNATELVQSSSTGEICDSPHQILDGENC

+TLIDALLGDPQCDDFQNKKWDLFVERSKAYSNCYPYDVPDYASLRSLVASSGTLEFNNESFNWTGVTQNGTSSACKRRSN

+NSFFSRLNWLTHSKFKYPALNVTMPNNEKFDKLYIWGVHHPGTDNDQIFLYAQASGRITVSTKRSQQTVIPNIGSRRNIP

+SRISIYWTIVKPGDILLINSTGNLIAPRGYFKIRSGKSSIMRSDAPIGKCNSECITPNGSIPNDKPFQNVNRITYGACPR

+YVKQNTLKLATGMRNVPEKQTRGIFGAIAGFIENGWEGMVDGWYGFRHQNSEGIQAADLKSTQAAINQINGNLNRLIGKT

+NEKFHQIEKEFSEVEGRIQDLEKYVEDTKIDLWSYNAELLVALENQHTIDLTDSEMNKLFERTKKQLRENAEDMGNGCFK

+IYHKCDNACIGSIRNGTYDHDVYRDEALNNRFQIKGVELKSGYKDWILWISFAISCFLLCVVLLGFIMWACQKGNIRCNI

+CI

+>A/Mexico/InDRE2160/2005

+MKTIIALSYILCLVFAQKLPGNDNSTATLCLGHHAVPNGTIVKTITNDQIEVTNATELVQSSSTGEICDSPHQILDGENC

+TLIDALLGDPQCDGFQNKKWDLFVERSKAYSNCYPYDVPDYASLRSLVASSGTLEFNNESFNWTGVTQNGTSSACKRRSN

+NSFFSRLNWLTHLKFKYPALNVTMPNNEKFDKLYIWGVHHPGTDNDQIFLYAQASGRITVSTKRSQQTVIPNIGSRRNIP

+SRISIYWTIVKPGDILLINSTGNLIAPRGYFKIRSGKSSIMRSDAPIGKCNSECITPNGSIPNDKPFQNVNRITYGACPR

+YVKQNTLKLATGMRNVPEKQTRGIFGAIAGFIENGWEGMVDGWYGFRHQNSEGIQAADLKSTQAAINQINGKLNRLIGKT

+NEKFHQIEKEFSEVEGRIQDLEKYVEDTKIDLWSYNAELLVALENQHTIDLTDSEMNKLFERTKKQLRENAEDMGNGCFK

+IYHKCDNACIGSIRNGTYDHDVYRDEALNNRFQIKGVELKSGYKDWILWISFAISCFLLCVALLGFIMWACQKGNIRCNI

+CI

+>A/Colorado/UR06-0023/2007

+MKTIIALSYILCLVFAQKLPGNDNSTATLCLGHHAVPNGTIVKTITNDQIEVTNATELVQSSSTGEICDSPHQILDGENC

+TLIDALLGDPQCDGFQNKKWDLFVERSKAYSNCYPYDVPDYASLRSLVASSGTLEFNNESFNWTGVTQNGTSSACKRRSN

+NSFFSRLNWLTHLKFKYPALNVTMPNNEKFDKLYIWGVHHPGTDNDQIFLYAQASGRITVSTKRSQQTVIPNIGSRRNIP

+SRISIYWTIVKPGDILLINSTGNLIAPRGYFKIRSGKSSIMRSDAPIGKCNSECITPNGSIPNDKPFQNVNRITYGACPR

+YVKQNTLKLATGMRNVPEKQTRGIFGAIAGFIENGWEGMVDGWYGFRHQNSEGIQAADLKSTQAAIDQINGKLNRLIGKT

+NEKFHQIEKEFSEVEGRIQDLEKYVEDTKIDLWSYNAELIVALENQHTIDLTDSEMNKLFERTKKQLRENAEDMGNGCFK

+IYHKCDNACIGSIRNGTYDHDVYRDEALNNRFQIKGVELKSGYKDWILWISFAISCFLLCVALLGFIMWACQKGNIRCNI

+CI

+>A/Hong_Kong/NHRC0001/2005

+MKTIIALSYILCLVFAQKLPGNDNSTATLCLGHHAVPNGTIVKTITNDQIEVTNATELVQSSSTGGICDSPHQILDGENC

+TLIDALLGDPQCDGFQNKKWDLFVERSKAYSNCYPYDVPDYASLRSLVASSGTLEFNNESFNWTGVTQNGTSSACKRRSN

+NSFFSRLNWLTHLKFKYPALNVTMPNNEKFDKLYIWGVHHPGTDNDQIFLYAQASGRITVSTKRSQQTVIPNIGSRRNIP

+SRISIYWTIVKPGDILLINSTGNLIAPRGYFKIRSGKSSIMRSDAPIGKCNSECITPNGSIPNDKPFQNVNRITYGACPR

+YVKQNTLKLATGMRNVPEKQTRGIFGAIAGFIENGWEGMVDGWYGFRHQNSEGVQAADLKSTQAAINQINGKLNRLIGKT

+NEKFHQIEKEFSEVEGRIQDLEKYVEDTKIDLWSYNAELLVALENQHTIDLTDSEMNKLFERTKKQLRENAEDMGNGCFK

+IYHKCDNACIGSIRNGTYDHDVYRDEALNNRFQIKGVELKSGYKDWILWISFAISCFLLCVALLGFIMWACQKGNIRCNI

+CI

+>A/California/NHRC0001/2005

+MKTIIALSYILCLVFAQKLPGNDNSTATLCLGHHAVPNGTIVKTITNDQIEVTNATELVQSSSTGGICDSPHQILDGENC

+TLIDALLGDPQCDGFQNKKWDLFVERSKAYSNCYPYDVPDYASLRSLVASSGTLEFNNESFNWTGVTQNGTSSACKRRSN

+NSFFSRLNWLTHLKFKYPALNVTMPNNEKFDKLYIWGVHHPGTDNDQIFLYAQASGRITVSTKRSQQTVIPNIGSRRNIP

+SRISIYWTIVKPGDILLINSTGNLIAPRGYFKIRSGKSSIMRSDAPIGKCNSECITPNGSIPNDKPFQNVNRITYGACPR

+YVKQNTLKLATGMRNVPEKQTRGIFGAIAGFIENGWEGMVDGWYGFRHQNSEGIQAADLKSTQAAINQINGKLNKLIGKT

+NEKFHQIEKEFSEVEGRIQDLEKYVEDTKIDLWSYNAELLVALENQHTIDLTDSEMNKLFERTKKQLRENAEDMGNGCFK

+IYHKCDNACIGSIRNGTYDHDVYRDEALNNRFQIKGVELKSGYKDWILWISFAISCFLLCVALLGFIMWACQKGNIRCNI

+CI

+>A/Mexico/InDRE29/2006

+MKTIIALSYILCLVFAQKLPGNDNSTATLCLGHHAVPNGTIVKTITNDQIEVTNATELVQSSSTGGICDSPHQILDGENC

+TLIDALLGDPQCDGFQNKKWDLFVERSKAYSNCYPYDVPDYASLRSLVASSGTLEFNNESFNWTGVTQNGTSSACKRRSN

+NSFFSRLNWLTHLKFKYPALNVTMPNNEKFDKLYIWGVHHPGTDNDQIFLYAQASGRITVSTKRSQQTVIPNIGSRRNIP

+SRISIYWTIVKPGDILLINSTGNLIAPRGYFKIRSGKSSIMRSDAPIGKCNSECITPNGSIPNDKPFQNVNRITYGACPR

+YVKQNTLKLATGMRNVPEKQTRGIFGAIAGFIENGWEGMVDGWYGFRHQNSEGIQAADLKSTQAAINQINGKLNRLIGKT

+NEKFHQIEKEFSEVEGRIQDLEKYVEDTKIDLWSYNAELLVALENQHTIDLTDSEMNKLFERTKKQLRENAEDMGNGCFK

+IYHKCDNACIGSIRNGTYDHDVYRDEALNNRFQIKGVELKSGYKDWILWISFAISCFLLCVALLGFIMWACQKGNIRCNI

+CI

+>A/California/VRDL165/2009

+MKTIIALSYILCLVFAQKLPGNDNSTATLCLGHHAVPNGTIVKTITNDQIEVTNATELVQSSSTGEICDSPHQILDGKNC

+TLIDALLGDPQCDGFQNKKWDLFVERSKAYSNCYPYDVPDYASLRSLVASSGTLEFNNESFNWTGVTQNGTSSACIRRSK

+NSFFSRLNWLTHLNFKYPALNVTMPNNEQFDKLYIWGVHHPGTDKDQIFLYAQASGRITVSTKRSQQTVIPNIGSRRNIP

+SRISIYWTIVKPGDILLINSTGNLIAPRGYFKIRSGKSSIMRSDAPIGKCNSECITPNGSIPNDKPFQNVNRITYGACPR

+YVKQSTLKLATGMRNVPEKQTRGIFGAIAGFIENGWEGMVDGWYGFRHQNSEGRQAADLKSTQAAIDQINGKLNRLIGKT

+NEKFHQIEKEFSEVEGRIQDLEKYVEDTKIDLWSYNAELLVALENQHTIDLTDSEMNKLFEKTKKQLRENAEDMGNGCFK

+IYHKCNNACIGSIRNGTYDHDVYRDEALNNRFQIKGVELKSGYKDWILWISFAISCFLLCVALLGFIMWACQKGNIRCNI

+CI

+>A/California/UR07-0017/2008

+MKTIIALSYILCLVSAQKLPGNDNSTATLCLGHHAVPNGTIVKTITNDQIEVTNATELVQSSSTGEICDSPHQVLDGENC

+TLIDALLGDPQCDGFQNKKWDLFVERSKAYSNCYPYDVPDYASLRSLVASSGTLEFNNESFNWTGVTQNGTSSACIRRSN

+NSFFSRLNWLTHSKFKYPALNVTMPNNEEFDKLYIWGVHHPGTDNDQIFLYAQASGRITVSTKRSQQTVIPNIGSRRNIP

+SRISIYWTIVKPGDILLINSTGNLIAPRGYFKIRSGKSSIMRSDAPIGKCNSECITPNGSIPNDKPFQNVNRITYGACPR

+YVKQNTLKLATGMRNVPEKQTRGIFGAIAGFIENGWEGMVDGWYGFRHQNSEGIQAADLKSTQAAIDQINGKLNRLIGKT

+NEKFHQIEKEFTEVEGRIQDLEKYVEDTKIDLWSYNAELLVALENQHTIDLTDSEMNKLFEKTKKQLRENAEDMGNGCFK

+IYHKCDNACIGSIRNGTYDHEVYRDEALNNRFQIKGVELKSGYKDWILWISFAISCFLLCVALLGFIMWACQKGNIRCNI

+CI

+>A/Ohio/UR07-0105/2008

+MKTIIALSYILCLVFAQKLPGNDNSTATLCLGHHAVPNGTIVKTITNDQIEVTNATELVQSSSTGEICDSPHQILDGENC

+TLIDALLGDPQCDGFQNKKWDLFVERSKAHSNCYPYDVPDYASLRSLVASSGTLEFNNESFNWTGVTQNGTSSACIRRSK

+NSFFSRLNWLTHLKFKYPALNVTMPNDEKFDKLYIWGVHHPGTDNDQIFLYAQASGRITVSTKRSQQTVIPNIGSRRNIP

+SRISIYWTIVKPGDILLINSTGNLIAPRGYFKIRSGKSSIMRSDAPIGKCNSECITPNGSIPNDKPFQNVNRITYGACPR

+YVKQNTLKLATGMRNVPEKQTRGIFGAIAGFIENGWEGMVDGWYGFRHQNSEGIQAADLKSTQAAIDQINGKLNRLIGKT

+NEKFHQIEKEFSEVEGRIQDLEKYVEDTKIDLWSYNAELLVALENQHTIDLTDSEMNKLFEKTKKQLRENAEDMGNGCFK

+IYHKCDNACVGSIRNGTYDHDVYRDEALNNRFQIKGVELKSGYKDWILWISFAISCFLLCVALLGFIMWACQKGNIRCNI

+CI

+>A/Kyrgyzstan/WRAIR1255P/2008

+MKTIIALSYILCLVFAQKLPGNDNSTATLCLGHHAVPNGTIVKTITNDQIEVTNATELVQSSSTGEICDSPHQILDGENC

+TLIDALLGDPQCDGFQNKKWDLFVERSKAYSNCYPYDVPDYASLRSLVASSGTLEFNNESFNWTGVTQNGTSSACIRRSN

+NSFFSRLNWLTHLRFKYPALNVTMPNNEQFDKLYIWGVHHPGTDNDQIFPYAQASGRITVSTKRSQQTVIPNIGSRRNIP

+SRISIYWTIVKPGDILLINSTGNLIAPRGYFKIRSGKSSIMRSDAPIGKCNSECITPNGSIPNDKPFQNVNRITYGACPR

+YVKQNTLKLATGMRNVPEKQTRGIFGAIAGFIENGWEGMVDGWYGFRHQNSEGRQAADLKSTQAAIDQINGKLNRLIGKT

+NEKFHQIEKEFSEVEGRIQDLEKYVEDTKIDLWSYNAELLVALENQHTIDLTDSEMNKLFEKTKKQLRENAEDMGNGCFK

+IYHKCDNACIGSIRNGTYDHDVYRDEALNNRFQIKGVELKSGYKDWILWISFAISCFLLCVALLGFIMWACQKGNIRCNI

+CI

+>A/Thailand/CU370/2008

+MKTIIALSYILCLVFAQKLPGNDNSTATLCLGHHAVPNGTIVKTITNDQIEVTNATELVQSSSTGEICDSPHQILDGENC

+TLIDALLGDPQCDGFQNKKWDLFVERSKAYSNCYPYDVPDYASLRSLVASSGTLEFNNESFNWTGVTQNGTSSACIRKSN

+NSFFSRLNWLTHLKFKYPALNVTMPNNEQFDKLYIWGVHHPGTDNDQIFLYAQASGRITVSTKRSQQTVIPNIGSRRNIP

+SRISIYWTIVKPGDILLINSTGNLIAPRGYFKIRSGKSSIMRSDAPIGKCNSECITPNGSIPNDKPFQNVNRITYGACPR

+YVKQNTLKLATGMRNVPEKQTRGIFGAIAGFIENGWEGMMDGWYGFRHQNSEGRQAADLKSTQAAIDQINGKLNRLIGKT

+NEKFHQIEKEFSEVEGRIQDLEKYVEDTKIDLWSYNAELLVALENQHTIDLTDSEMNKLFEKTKKQLRENAEDMGNGCFK

+IYHKCDNACIGSIRNGTYDHDVYRDEALNNRFQIKGVELKSGYKDWILWISFAISCFLLCVALLGFIMWACQKGNIRCNI

+CI

+>A/Moscow/RII05/2012

+MKTIIALSYILCLVFAQKLPGNDNSMATLCLGHHAVPNGTIVKTITNDQIEVTNATELVQNSSIGEICDSPHQILDGENC

+TLIDALLGDPQCDGFQNKKWDLFVERSKAYSNCYPYDVPDYASLRSLVASSGTLEFNNESFNWTGVTQNGTSSACMRRSN

+SSFFSRLNWLTHLNFKYPALNVTMPNNEQFDKLYIWGVHHPGTDKDQIFLYAQSSGRITVSTKRSQQAVIPNIGSRRNIP

+SRISIYWTIVKPGDILLINSTGNLIAPRGYFKIRSGKSSIMRSDAPIGKCNSECITPNGSIPNDKPFQNVNRITYGACPR

+YVKQSTLKLATGMRNVPEKQTRGIFGAIAGFIENGWEGMVDGWYGFRHQNSEGRQAADLKSTQAAIDQINGKLNRLIGKT

+NEKFHQIEKEFSEVEGRIQDLEKYVEDTKIDLWSYNAELLVALENQHTIDLTDSEMNKLFEKTKKQLRENAEDMGNGCFK

+IYHKCDNACIGSIRNGTYDHDVYRDEALNNRFQIKGVELKSGYKDWILWISFAISCFLLCVALLGFIMWACQKGNIRCNI

+CI

+>A/Hokkaido/30-1-a/2013

+MKTIIALSYILCLVFAQKLPGNDNSTATLCLGHHAVPNGTIVKTITNDRIEVTNATELVQNSSIGEICDSPHQILDGENC

+TLIDALLGDPQCDGFQNKKWDLFVERSKAYSNCYPYDVPDYASLRSLVASSGTLEFNNESFNWTGVTQNGTSSACIRRSN

+SSFFSRLNWLTHLNFKYPALNVTMPNNEQFDKLYIWGVHHPGTDKDQIFLYAQSSGRITVSTKRSQQAVIPNIGSRRNIP

+SRISIYWTIVKPGDILLINSTGNLIAPRGYFKIRSGKSSIMRSDAPIGKCKSECITPNGSIPNDKPFQNVNRITYGACPR

+YVKQSTLKLATGMRNVPEKQTRGIFGAIAGFIENGWEGMVDGWYGFRHQNSEGRQAADLKSTQAAIDQINGKLNRLIGKT

+NEKFHQIEKEFSEVEGRIQDLEKYVEDTKIDLWSYNAELLVALENQHTIDLTDSEMNKLFEKTKKQLRENAEDMGNGCFK

+IYHKCDNACIGSIRNGTYDHDVYRDEALNNRFQIKGVELKSGYKDWILWISFAISCFLLCVALLGFIMWACQKGNIRCNI

+CI

+>A/Czech_Republic/119/2012

+MKTIIALSYILCLVFAQKLPGNDNSTATLCLGHHAVPNGTIVKTITNDQIEVTNATELVQSSSTGEICDSPHQILDGENC

+TLIDALLGDPQCDGFQNKKWDLFVERSKAYSNCYPYDVPDYASLRSLVASSGTLEFNNESFNWTGVTQNGTSSACIRRSN

+SSFFSRLNWLTHLNFKYPALNVTMPNNEQFDKLYIWGVHHPGTDKDQIFLYAQSSGRITVSTKRSQQAVIPNIGSRRNIP

+SRISIYWTIVKPGDILLINSTGNLIAPRGYFKIRSGKSSIMRSDAPIGKCNSECITPNGSIPNDKPFQNVNRITYGACPR

+YVKQSTLKLATGMRNVPEKQTRGIFGAIAGFIENGWEGMVDGWYGFRHQNSEGRQAADLKSTQAAIDQINGKLNRLIGKT

+NEKFHQIEKEFSEVEGRIQDLEKYVEDTKIDLWSYNAELLVALENQHTIDLTDSEMNKLFEKTKKQLRENAEDMGNGCFK

+IYHKCDNACIGSIRNGTYNHDVYRDEALNNRFQIKGVELKSGYKDWILWISFAISCFLLCVALLGFIMWACQKGNIRCNI

+CI

+>A/Petrozavodsk/RII01/2012

+MKTIIALSYILCLVFAQKLPGNDNSTATLCLGHHAVPNGTIVKTITNDQIEVTNATELVQSSSTGEICDSPHQILDGENC

+TLIDALLGDPQCDGFQNKKWDLFVERSKAYSNCYPYDVPDYASLRSLVASSGTLEFNNESFNWTGVTQNGTSSACIRRSN

+SSFFSRLNWLTHLNFKYPALNVTMPNNEQFDKLYIWGVHHPGTDKDQIFLYAQSSGRITVSTKRSQQAVIPNIGSRRNIP

+SRISIYWTIVKPGDILLINSTGNLIAPRGYFKIRSGKSSIMRSDAPIGKCNSECITPNGSIPNDKPFQNVNRITYGACPR

+YVKQSTLKLATGMRNVPEKQTRGIFGAIAGFIENGWEGMVDGWYGFRHQNSEGRQAADLKSTQAAIDQINGKLNRLIGKT

+NEKFHQIEKEFSEVEGRIQDLEKYVEDTKIDLWSYNAELLVALENQHTIDLTGSEMNKLFEKTKKQLRENAEDMGNGCFK

+IYHKCDNACIGSIRNGTYNHDVYRDEALNNRFQIKGVELKSGYKDWILWISFAISCFLLCVALLGFIMWACQKGNIRCNI

+CI

+>A/New_York/20342/2010

+MKTIIALSYILCLVFAQKLPGNDNSTATLCLGHHAVPNGTIVKTITNDQIEVTNATELVQSSSTGEICDSPHQILDGENC

+TLIDALLGDPQCDGFQNKKWDLFVERSKAYSNCYPYDVPDYASLRSLVASSGTLEFNNESFNWTGVTQNGTSSACIRRSN

+NSFFSRLNWLTHLNFKYPALNVTMPNNEQFDKLYIWGVHHPGTDKDQIFLYAQASGRITVSTKRSQQAVIPNIGSRRNIP

+SRISIYWTIVKPGDILLINSTGNLIAPRGYFKIRNGKSSIMRSDAPIGKCNSECITPNGSIPNDKPFQNVNRITYGACPR

+YVKQNTLKLATGMRNVPEKQTRGIFGAIAGFIENGWEGMVDGWYGFRHQNSEGRQAADLKSTQAAIDQINGKLNRLIGKT

+NEKFHQIEKEFSEVEGRIQDLEKYVEDTKIDLWSYNAELLVALENQHTIDLTDSEMNKLFEKTKKQLRENAEDMGNGCFK

+IYHKCDNACIGSIRNGTYDHDVYRDEALNNRFQIKGVELKSGYKDWILWISFAISCFLLCVALLGFIMWACQKGNIRCNI

+CI

+>A/Boston/DOA52/2011

+MKTIIALSYILCLVFAQKLPGNDNSMATLCLGHHAVPNGTIVKTITNDQIEVTNATELVQNSSTGEICDSPHQILDGENC

+TLIDALLGDPQCDGFQNKKWDLFVERSKAYSNCYPYDVPDYASLRSLVASSGTLEFNNESFNWTGVTQNGTSSACIRRSN

+NSFFSRLNWLTHLNFKYPALNVTMPNNEQFDKLYIWGVHHPGTDKDQIFLYAQASGRITVSTKRGQQAVIPNIGSRRNIP

+SRISIYWTIVKPGDILLINSTGNLIAPRGYFKIRSGKSSIMRSDAPIGKCNSECITPNGSIPNDKPFQNVNRITYGACPR

+YVKQNTLKLATGMRNVPEKQTRGIFGAIAGFIENGWEGMVDGWYGFRHQNSEGRQAADLKSTQAAIDQINGKLNRLVGKT

+NEKFHQIEKEFSEVEGRIQDLEKYVEDTKIDLWSYNAELLVALENQHTIDLTDSEMNKLFEKTKKQLRENAEDMGNGCFK

+IYHKCDNACIGSIRNGTYDHDVYRDEALNNRFQIKGVELKSGYKDWILWISFAISCFLLCVALLGFIMWACQKGNIRCNI

+CI

+>A/Czech_Republic/126/2012

+MKTIIALSYILCLVFAQKLPGNDNSTATLCLGHHAVPNGTIVKTITNDQIEVTNATELVQSSSTGEICNSPHQILDGENC

+TLIDALLGDPQCDGFQNKKWDLFVERSKAHSNCYPYDVPDYASLRSLVASSGTLEFNNESFNWTGVTQNGTSSACIRRSN

+NSFFSRLNWLTHLNFKYPALNVTMPNNEQFDKLYIWGVHHPGTDKDQIFLYAQAAGRITVSTKRSQQAVIPNIGSRRNIP

+SRVSIYWTIVKPGDILLINSTGNLIAPRGYFKIRSGKSSIMRSDAPIGKCNSACITPNGSIPNDKPFQNVNRITYGACPR

+YVNQNTLKLATGMRNVPEKQTRGIFGAIAGFIENGWEGMVDGWYGFRHQNSEGRQAADLKSTQAAIDQINGKLNRLIGKT

+NEKFHQIEKEFSEVEGRIQDLEKYVEDTKIDLWSYNAELLVALENQHTIDLTDSEMNKLFEKTKKQLRENAEDMGNGCFK

+IYHKCDNACIGSIRNGTYDHDVYRDEALNNRFQIKGVELKSGYKDWILWISFAISCFLLCVALLGFIMWACQKGNIRCNI

+CI

+>A/Singapore/H2010.559C/2010

+MKTIIALSYILCLVFAQKLPGNDNSTATLCLGHHAVPNGTIVKTITNDQIEVTNATELVQSSSTGEICNSPHQILDGENC

+TLIDALLGDPQCDGFQNKKWDLFVERSKAHSNCYPYDVPDYASLRSLVASSGTLEFNNESFNWTGVTQNGTSSACIRRSN

+NSFFSRLNWLTHLNFKYPALNVTMPNNEQFDKLYIWGVHHPGTDKDQIFLYAQASGRITVSTKRSQQAVIPNIGSRRNIP

+SRVSIYWTIVKPGDILLINSTGNLIAPRGYFKIRSGKSSIMRSDAPIGKCNSACITPNGSIPNDKPFQNVNRITYGACPR

+YVKQNTLKLATGMRNVPEKQTRGIFGAIAGFIENGWEGMVDGWYGFRHQNSEGRQAADLKSTQAAIDQINGKLNRLIGKT

+NEKFHQIEKEFSEVEGRIQDLEKYVEDTKIDLWSYNAELLVALENQHTIDLTDSEMNKLFEKTKKQLRENAEDMGNGCFK

+IYHKCDNACIGSIRNGTYDHDVYRDEALNNRFQIKGVELKSGYKDWILWISFAISCFLFCVALLGFIMWACQKGNIRCNI

+CI

+>A/Auckland/615/2002

+MKTIIALSYILCLVFAQKLPGNDNSTATLCLGHHAVPNGTLVKTITNDQIEVTNATELVQSSSTGRICDSPHQILDGENC

+TLIDALLGDPHCDGFQNKEWDLFVERSKAYSNCYPYDVPDYVSLRSLVASSGTLEFNNESFNWTGVAQNGTSSACKRRSD

+KSFFSRLNWLHQLKYKYPALNVTMPNNEKFDKLYIWGVHHPGTDSDQISLYAQASGRVTVSTKRSQQTVIPNIGSRRGVS

+SRISIYWTIVKPGDILLINSTGNLIAPRGYFKIRSGKSSIMRSDAPIGKCNSECITPNGSIPNDKPFQNVNRITYGPCPR

+YVKQTTLKLATGMRNVPEKQTRGIFGAIAGFIENGWEGMMDGWYGFRHQNSEGTQAADLKSTQAAINQINGKLNRLIEKT

+NEKFHQIEKEFSEVEGRIQDLEKYVEDTKIDLWSYNAELLVSLENQHTIDLTDSEMNKLFERTKKQLRENAEDMGNGCFK

+IYHKCDNACIGSIRNGTYDHDVYRDEALNNRFQIKGVELKSGYKDWILWISFAISCFLLCIVLLGFIMWACQKGNIRCNI

+CI

+>A/New_York/657/1994

+MKTIIALSYILCLVFAQKLPGNDNSTATLCLGHHAVPNGTLVKTITNDQIEVTNATELVQSSPTGRICNSPHRIIDGKNC

+TLIDALLGDPHCDGFQNKEWDLFVERSKAYSNCYPYDVPDYASLRSLVASSGTLEFINENFNWTGVAQDGKSYACKRGSV

+NSFFSRLNWLHKLEYKYPALNVTMPNNGKFDKLYIWGVHHPSTDSDQTSLYVRASGRVTVSTKRSQQTVIPDIGYRRGLS

+SRISIYWTIVKPGDILLINSTGNLIAPRGYFKLRNGKSSIMRSDAPIGNCSSECITPNGSIPNDKPFQNVNRITYGACPR

+YIKQNTLKLATGMRNVPEKQTRGIFGAIAGFIENGWEGMVDGWYGFRHQNSEGTQAADLKSTQAAIDQINGKLNRLVEKT

+NEKFHQIEKEFSEVEGRIQDLEKYVEDTKIDLWSYNAELLVALENQHTIDLTDSEMNKLFERTKKQLRENAEDMGNGCFK

+IYHKCDNACIGSIRNGTYDHDVYRDEALNNRFQIKGVELKSGYKDWILWISFAISCFLLCVVLLGFIMWACQKGNIRCNI

+CI

+>A/Malaysia/12990/1999

+MKTIIALSYILCMVLAQKLPVKDNSTATLCLGHHAVPNGTLVKTITNDHIEVTNATELVQSSSTGRICDSPHQILDGENC

+TLIDALLGDPHCDGFQNKEWDLFVERSTAYSNCYPYDVPDYASLRSLVASSGTLEFNNESFNWTGVAQNGTSSACKRRSI

+KSFFSRLNWLHQLKYKYPALNVTMPNNEKFDKLYIWGVHHPSTDSDQISLYAQASGRVTVSTKRSQQTVIPNIGSRRGVS

+SRISIYWTIVKPGDILLINSTGNLIAPRGYFKIRSGKSSIMRSNASIGKCNSECITPNGSIPNDKPFQNVNRITYGACPR

+YVKQNTLKLATGMRNVPEKQTRGIFGAIAGFIENGWEGMVDGWYGFRHQNSEGTQAADLKSTQAAINQINGKLNRLIEKT

+NEKFHQIEKEFSEVEGRIQDLEKYVEDTKIDLWSYNAELLVALENQHTIDLTDSEMNKLFERTRKQLRENAEDMGNGCFK

+IYHKCDNACIGSIRNGTYDHDVYRDEALNNRFQIKGVELKSGYKDWILWISFAISCFLLCVVLLGFIMWACQKGNIRCNI

+CI

+>A/HaNoi/1766/2001

+MKTIIALSYILCLVFAQKLPGNDNSTATLCLGHHAVPNGTLVKTITNDQIEVTNATELVQSSSTGGICDSPHQILDGENC

+TLIDALLGDPHCDGFQNKEWDLFVERSKAYSNCYPYDVPDYASLRSLVASSGTLEFNNESFNWTGVAQNGTSSACKRRSN

+KSFFSRLNWLHQLKYKYPALNVTMPNNEKFDKLYIWGVHHPSTDSDQISLYAQASGRVTVSTKRSQQTVIPNIGSRRDVS

+SRISIYWTIVKPGDILLINSTGNLIAPRGYFKIRSGKSSIMRSDAPIGKCNSECITPNGSIPNDKPFQNVNRITYGACPR

+YVKQNTLKLATGMRNVPEKQTRGIFGAIAGFIENGWEGMVDGWYGFRHQNSEGTQAADLKSTQAAINQINGKLNRLIGKT

+NEKFHQIEKEFSEVEGRIQDLEKYVEDTKIDLWSYNAELLVALENQHTIDLTDSEMNKLFERTKKQLRENAEDMGNGCFK

+IYHKCDNACIGSIRNGTYDHDVYRDEALNNRFQIKGVELKSGYKDWILWISFAMSCFLLCVVLLGFIMWACQKGNIRCNI

+CI

+>A/Malaysia/10816/1999

+MKTIIALSYILCLIFAQKLPGNDNSTATLCLGHHAVPNGTLVKTITNDQIEVTNATELVQSSSTGKICDSPHQILDGENC

+TLIDALLGDPHCDGFQNKEWDLFVERSKAYSNCYPYDVPDYASLRSLVASSGTLEFNNESFNWTGVAQNGTSSACKRRSN

+KSFFSRLNWLHQLKYKYPALNVTMPNNEKFDKLYIWGVHHPSTDSDQISLYAQASGRVTVSTKRSQQTVIPNIGSRRGVS

+SRISIYWTIVKPGDILLINSTGNLIAPRGYFKIRSGKSSIMRSDAPIGKCNSECITPNGSIPNDKPFQNVNRITYGACPR

+YVKQNTLKLATGMRNVPEKQTRGIFGAIAGFIENGWEGMVDGWYGFRHQNSEGTQAADLKSTQAAINQINGKLNRLIEKT

+NEKFHQIEKEFSEVEGRIQDLEKYVEDTKIDLWSYNAELLVALENQHTIDLTDSEMNKLFERTKKQLRENAEDMGNGCFK

+IYHKCDNACIGSIRNGTYDHDVYRDEAVNNRFQIKGVELKSGYKDWILWISFAISCFLLCVVLLGFIMWACQKGNIRCNI

+CI

+>A/Netherlands/126/2001

+MKTIIALSYILCLVFAQKLPGNDNSTATLCLGHHAVPNGTLVKTITNDQIEVTNATELVQSSSTGGICDSPHQILDGENC

+TLIDALLGDPHCDGFQNKEWDLFVERSKAYSNCYPYDVPDYASLRSLVASSGTLEFNNESFNWTGVAQNGTSSACKRRSN

+KSFFSRLNWLHQLKYKYPALNVTMPNNEKFDKLYIWGVHHPSTDSDQISLYAQAPGRVTVSTKRSQQTVIPNIGSRRGVS

+SRISIYWTIVKPGDILLINCTGNLIAPRGYFKIRSGKSSIMRSDASIGKCNSECITPNGSIPNDKPFQNVNRITYGACPR

+YVKQNTLKLATGMRNVPEKQTRGIFGAIAGFIENGWEGMVDGWYGFRHQNSEGTQAADLKSTQAAINQINGKLNRLIEKT

+NEKFHQIEKEFSEVEGRIQDLEKYVEDTKIDLWSYNAELLVALENQHTIDLTDSEMNKLFERTKKQLRENAEDMGNGCFK

+IYHKCDNACIGSIRNGTYDHDVYRDEALNNRFQIKGVELKSGYKDWILWISFATSCFLLCVVLLGFIMWACQKGNIRCNI

+CI

+>A/New_York/435/2000

+MKTIIALSYILCLVFAQKLPGNDNSTATLCLGHHAVPNGTLVKTITNDQIEVTNATELVQSSSTGRICDSPHQILDGENC

+TLIDALLGDPHCDGFQNKEWDLFVERSKAYSNCYPYDVPDYASLRSLVASSGTLEFNNESFNWTGVAQNGTSSACKRRSN

+KSFFSRLNWLHQLKYKYPALNVTMPNNEKFDKLYIWGVHHPSTDSDQISLYAQASGRVTVSTKRSQQTVIPNIGSRRGVS

+SRISIYWTIVKPGDILLINSTGNLIAPRGYFKIRSGKSSVMRSDASIGRCNSECITPNGSIPNDKPFQNVNRITYGACPR

+YVKQNTLKLATGMRNVPEKQTRGIFGAIAGFIENGWEGMVDGWYGFRHQNSEGTQAADLKSTQAAINQINGKLNRLIEKT

+NEKFHQIEKEFSEVEGRIQDLEKYVEDTKIDLWSYNAELLVALENQHTIDLTDSEMNKLFERTKKQLRENAEDMGNGCFK

+IYHKCDNACIGSIRNGTYDHDVYRDEALNNRFQIKGVELKSGYKDWILWISFAISCFLLCVVLLGFIMWACQKGNIRCNI

+CI

+>A/New_York/452/1999

+MKTIIALSYILCLVFAQKLPGNDNSTATLCLGHHAVPNGTLVKTITNDQIEVTNATELVQSSSTGRICDSPHRILDGENC

+TLIDALLGDPHCDGFQNKEWDLFVERSKAYSNCYPYDVPDYASLRSLVASSGTLEFNNESFNWTGVAQNGTSSACKRRSI

+KSFFSRLNWLHQLKYKYPALNVTMPNNDKFDKLYIWGVHHPSTDSDQTSLYAQASGRVTVSTKRSQQTVIPNIGSRRGVS

+SRISIYWTIVKPGDILLINSTGNLIAPRGYFKIRSGKSSIMRSDAPIGKCNSECITPNGSIPNDKPFQNVNRITYGACPR

+YVKQNTLKLATGMRNVPEKQTRGIFGAIAGFIENGWEGMVDGWYGFRHQNSEGTQAADLKSTQAAINQINGKLNRLIEKT

+NEKFHQIEKEFSEVEGRIQDLEKYVEDTKIDLWSYNAELLVALENQHTIDLTDSEMNKLFERTRKQLRENAEDMGNGCFK

+IYHKCDNACIGSIRNGTYDHDVYRDEALNNRFQIKGVELKSGYKDWILWISFAISCFLFCVVLLGFIMWACQKGNIRCNI

+CI

+>A/New_York/523/1998

+MKTIIALSYISCLVFAQKLPGNDNNTATLCLGHHAVPNGTLVKTITNDQIEVTNATELVQSSSTGRICDSPHRILDGENC

+TLIDALLGDPHCDGFQNKEWDLFVERSKAYSNCYPYDVPDYASLRSLVASSGTLEFNNESFNWTGVAQNGTSYACKRRSI

+KSFFSRLNWLHQLKYKYPALNVTMPNNDKFDKLYIWGVHHPSTDSDQTSLYAQASGRVTVSTKRSQQTVIPNIGSRRGVS

+SRISIYWTIVKPGDILLINSTGNLIAPRGYFKIRSGKSSIMRSDAPIGKCNSECITPNGSIPNDKPFQNVNRITYGACPR

+YVKQNTLKLATGMRNVPEKQTRGIFGAIAGFIENGWEGMVDGWYGFRHQNSEGTQAADLKSTQAAINQINGKLNRLIEKT

+NEKFHQIEKEFSEVEGRIQDLEKYVEDTKIDLWSYNAELLVALENQHTIDLTDSEMNKLFERTRKQLRENAEDMGNGCFK

+IYHKCDNACIGSIRNGTYDHDVYRDEALNNRFQIKGVELRSGYKDWILWISFAISCFLLCVVLLGFIMWACQKGNIRCNI

+CI

+>A/New_York/582/1996

+MKTIIALSYISCLVFAQKLPGNDNSTATLCLGHHAVPNGTLVKTITNDQIEVTNATELVQSSSTGRICDGPHQILDGKNC

+TLIDALLGDPHCDGFQNKEWDLFVERSKAYSNCYPYDVPDYASLRSLVASSGTLEFTNESFNWTGVAQNGTSYACKRGSV

+KSFFSRLNWLHKLEYKYPALNVTMPNNDKFDKLYIWGVHHPSTDSDQTSLYVQSSGRITVSTKRSQQTVTPNIGSRRGVS

+SRISIYWTIVKPGDILLITSTGNLIAPRGYFKIRRGKSSIMRSDAPIDNCNSECITPNGSIPNDKPFQNVNRITYGACPR

+YVKQNTLKLATGMRNVPEKQTRGIFGAIAGFIENGWEGMVDGWYGFRHQNSEGTQAADLKSTQAAINQINGKLNRLIEKT

+NEKFHQIEKEFSEVEGRIQDLEKYVEDTKIDLWSYNAELLVALENQHTIDLTDSEMNKLFERTRKQLRENAEDMGNGCFK

+IYHKCDNACIGSIRNGTYDHDVYRDEALNNRFQIKGVELKSGYKDWILWISFAISCFLLCVVLLGFIMWACQKGNIRCNI

+CI

+>A/New_York/603/1996

+MKTIIALSYILCLVFAQKLPGNDNSTATLCLGHHAVPNGTLVKTITNDQIEVTNATELVQGSSTGRICDSPHRILDGKNC

+TLIDALLGDPHCDGFQNKEWDLFVERSKAYSNCYPYDVPDYASLRSLVASSGTLEFNNESFNWTGVAQNGTSYACKRRSV

+KSFFSRLNWLHKLEYKYPALNVTMPNNDKFDKLYIWGVHHPSTDSDQTSLYVQASGRVTVSTKRSQQTVIPNIGSRRGVS

+SRISIYWTIVKPGDILLISSTGNLIAPRGYFKIRSGKSSIMRSDAPIDNCNSECITPNGSIPNDKPFQNVNRITYGACPR

+YVKQNTLKLATGMRNVPEKQTKGIFGAIAGFIENGWEGMVDGWYGFRHQNSEGTQAADLKSTQAAINQINGKLNRLIEKT

+NEKFHQIEKEFSEVEGRIQDLEKYVEDTKIDLWSYNAELLVALENQHTIDLTDSEMNKLFERTRKQLRENAEDMGNGCFK

+IYHKCDNACIGSIRNGTYDHDVYRDEALNNRFQIKGVELKSGYKDWILWISFAMSCFLLCVVLLGFIMWACQKGNIRCNI

+CI

@@ -773,7 +773,15 @@ pp <- (p + scale_y_continuous(expand=c(0, 0.3))) %>%

 pp + theme(legend.position="right")

 ```

+## visualize tree with multiple sequence alignment

+With `msaplot` function, user can visualizes multiple sequence alignment with phylogenetic tree, as demonstrated below:

+```{r fig.width=8, fig.height=12, fig.align='center'}

+fasta <- system.file("examples/FluA_H3_AA.fas", package="ggtree")

+msaplot(ggtree(beast_tree), fasta)

+```

+

+A specific slice of the alignment can also be displayed by specific _window_ parameter.

 # External documents