1. ggtree
  2. Commit c4a9912c0814b0bf321fd4686132817ba0646652
Browse code

compatible with tidyr 0.7.0

guangchuang yu authored on 03/08/2017 05:05:40
Showing 3 changed files
  • NEWS index 6f0d2982..c12a0dc6 100644
  • R/inset.R index df1cef6a..4ce057c5 100644
  • README.md index c11c3809..4995ad90 100644
NEWS
History View file @ c4a9912c
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@@ -1,5 +1,6 @@
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 CHANGES IN VERSION 1.9.3
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 ------------------------
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+ o update to using !! in tidyr::gather for compatible with tidyr 0.7.0 <2017-08-03, Thu>
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  o now geom_text2, geom_label2, geom_point2 and geom_segment2 work with ggplot2 <2017-08-01, Tue>
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  o update fortify.jplace to support number of placement (nplace) <2017-07-27, Thu>
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R/inset.R
History View file @ c4a9912c
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@@ -63,7 +63,7 @@ nodebar <- function(data, cols, color, alpha=1, position="stack") {
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     }
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     type <- value <- NULL
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-    ldf <- gather(data, type, value, cols) %>% split(., .$node)
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+    ldf <- gather(data, type, value, !! cols) %>% split(., .$node)
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     bars <- lapply(ldf, function(df) ggplot(df, aes_(x=1, y=~value, fill=~type)) +
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                                      geom_bar(stat='identity', alpha=alpha, position=position) +
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                                      theme_inset()
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@@ -96,7 +96,7 @@ nodepie <- function(data, cols, color, alpha=1) {
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     if (missingArg(color)) {
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         color <- NA
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     }
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-    ldf <- gather(data, type, value, cols) %>% split(., .$node)
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+    ldf <- gather(data, type, value, !! cols) %>% split(., .$node)
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     lapply(ldf, function(df) ggpie(df, y=~value, fill=~type, color, alpha))
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 }
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README.md
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@@ -6,7 +6,7 @@ ggtree: an R package for visualization and annotation of phylogenetic trees with
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 [![](https://img.shields.io/badge/release%20version-1.8.1-green.svg?style=flat)](https://bioconductor.org/packages/ggtree) [![](https://img.shields.io/badge/devel%20version-1.9.3-green.svg?style=flat)](https://github.com/guangchuangyu/ggtree) [![Bioc](http://www.bioconductor.org/shields/years-in-bioc/ggtree.svg)](https://www.bioconductor.org/packages/devel/bioc/html/ggtree.html#since) [![](https://img.shields.io/badge/download-17269/total-blue.svg?style=flat)](https://bioconductor.org/packages/stats/bioc/ggtree) [![](https://img.shields.io/badge/download-885/month-blue.svg?style=flat)](https://bioconductor.org/packages/stats/bioc/ggtree)
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-[![Project Status: Active - The project has reached a stable, usable state and is being actively developed.](http://www.repostatus.org/badges/latest/active.svg)](http://www.repostatus.org/#active) [![codecov](https://codecov.io/gh/GuangchuangYu/ggtree/branch/master/graph/badge.svg)](https://codecov.io/gh/GuangchuangYu/ggtree) [![Last-changedate](https://img.shields.io/badge/last%20change-2017--08--01-green.svg)](https://github.com/GuangchuangYu/ggtree/commits/master) [![GitHub forks](https://img.shields.io/github/forks/GuangchuangYu/ggtree.svg)](https://github.com/GuangchuangYu/ggtree/network) [![GitHub stars](https://img.shields.io/github/stars/GuangchuangYu/ggtree.svg)](https://github.com/GuangchuangYu/ggtree/stargazers) [![Awesome](https://cdn.rawgit.com/sindresorhus/awesome/d7305f38d29fed78fa85652e3a63e154dd8e8829/media/badge.svg)](https://awesome-r.com/#awesome-r-graphic-displays)
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+[![Project Status: Active - The project has reached a stable, usable state and is being actively developed.](http://www.repostatus.org/badges/latest/active.svg)](http://www.repostatus.org/#active) [![codecov](https://codecov.io/gh/GuangchuangYu/ggtree/branch/master/graph/badge.svg)](https://codecov.io/gh/GuangchuangYu/ggtree) [![Last-changedate](https://img.shields.io/badge/last%20change-2017--08--03-green.svg)](https://github.com/GuangchuangYu/ggtree/commits/master) [![GitHub forks](https://img.shields.io/github/forks/GuangchuangYu/ggtree.svg)](https://github.com/GuangchuangYu/ggtree/network) [![GitHub stars](https://img.shields.io/github/stars/GuangchuangYu/ggtree.svg)](https://github.com/GuangchuangYu/ggtree/stargazers) [![Awesome](https://cdn.rawgit.com/sindresorhus/awesome/d7305f38d29fed78fa85652e3a63e154dd8e8829/media/badge.svg)](https://awesome-r.com/#awesome-r-graphic-displays)
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 [![platform](http://www.bioconductor.org/shields/availability/devel/ggtree.svg)](https://www.bioconductor.org/packages/devel/bioc/html/ggtree.html#archives) [![Build Status](http://www.bioconductor.org/shields/build/devel/bioc/ggtree.svg)](https://bioconductor.org/checkResults/devel/bioc-LATEST/ggtree/) [![Linux/Mac Travis Build Status](https://img.shields.io/travis/GuangchuangYu/ggtree/master.svg?label=Mac%20OSX%20%26%20Linux)](https://travis-ci.org/GuangchuangYu/ggtree) [![AppVeyor Build Status](https://img.shields.io/appveyor/ci/Guangchuangyu/ggtree/master.svg?label=Windows)](https://ci.appveyor.com/project/GuangchuangYu/ggtree) [![Backers on Open Collective](https://opencollective.com/ggtree/backers/badge.svg)](#backers) [![Sponsors on Open Collective](https://opencollective.com/ggtree/sponsors/badge.svg)](#sponsors)
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