guangchuang yu authored on 24/11/2017 07:03:01
Showing 4 changed files

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@@ -89,6 +89,7 @@ GeomSegmentGGtree <- ggproto("GeomSegmentGGtree", GeomSegment,
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                                                    lineend = "butt", na.rm = FALSE, nudge_x = 0) {
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                                  data$x <- data$x + nudge_x
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+                                 ## data$x <- data$x - sapply(data$label, function(x) convertWidth(grobWidth(textGrob(x, gp=gpar(fontsize=.04* .pt))), "native", TRUE))
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                                  GeomSegment$draw_panel(data, panel_scales, coord, arrow,
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                                                         lineend, na.rm)
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                              }
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@@ -47,6 +47,7 @@ geom_tiplab <- function(mapping=NULL, hjust = 0,  align = FALSE, linetype = "dot
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                                xend = x + diff(range(x, na.rm=TRUE))/200,
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                                y = y, yend = y,
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                                node = node,
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+                               label = label,
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                                subset = isTip)
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         if (!is.null(mapping))
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             segment_mapping <- modifyList(segment_mapping, mapping)
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@@ -7,14 +7,14 @@ ggtree: an R package for visualization and annotation of phylogenetic trees with
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 [![releaseVersion](https://img.shields.io/badge/release%20version-1.10.0-green.svg?style=flat)](https://bioconductor.org/packages/ggtree)
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 [![develVersion](https://img.shields.io/badge/devel%20version-1.11.1-green.svg?style=flat)](https://github.com/guangchuangyu/ggtree)
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 [![Bioc](http://www.bioconductor.org/shields/years-in-bioc/ggtree.svg)](https://www.bioconductor.org/packages/devel/bioc/html/ggtree.html#since)
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-[![total](https://img.shields.io/badge/downloads-21387/total-blue.svg?style=flat)](https://bioconductor.org/packages/stats/bioc/ggtree)
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+[![total](https://img.shields.io/badge/downloads-21527/total-blue.svg?style=flat)](https://bioconductor.org/packages/stats/bioc/ggtree)
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 [![month](https://img.shields.io/badge/downloads-1156/month-blue.svg?style=flat)](https://bioconductor.org/packages/stats/bioc/ggtree)
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 [![Project Status: Active - The project has reached a stable, usable
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 state and is being actively
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 developed.](http://www.repostatus.org/badges/latest/active.svg)](http://www.repostatus.org/#active)
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 [![codecov](https://codecov.io/gh/GuangchuangYu/ggtree/branch/master/graph/badge.svg)](https://codecov.io/gh/GuangchuangYu/ggtree)
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-[![Last-changedate](https://img.shields.io/badge/last%20change-2017--11--20-green.svg)](https://github.com/GuangchuangYu/ggtree/commits/master)
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+[![Last-changedate](https://img.shields.io/badge/last%20change-2017--11--24-green.svg)](https://github.com/GuangchuangYu/ggtree/commits/master)
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 [![GitHub
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 forks](https://img.shields.io/github/forks/GuangchuangYu/ggtree.svg)](https://github.com/GuangchuangYu/ggtree/network)
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 [![GitHub
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@@ -59,8 +59,8 @@ their covariates and other associated data. ***Methods in Ecology and
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 Evolution***. 2017, 8(1):28-36.
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 [![doi](https://img.shields.io/badge/doi-10.1111/2041--210X.12628-green.svg?style=flat)](http://dx.doi.org/10.1111/2041-210X.12628)
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-[![Altmetric](https://img.shields.io/badge/Altmetric-336-green.svg?style=flat)](https://www.altmetric.com/details/10533079)
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-[![citation](https://img.shields.io/badge/cited%20by-46-green.svg?style=flat)](https://scholar.google.com.hk/scholar?oi=bibs&hl=en&cites=7268358477862164627)
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+[![Altmetric](https://img.shields.io/badge/Altmetric-335-green.svg?style=flat)](https://www.altmetric.com/details/10533079)
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+[![citation](https://img.shields.io/badge/cited%20by-49-green.svg?style=flat)](https://scholar.google.com.hk/scholar?oi=bibs&hl=en&cites=7268358477862164627)
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 ------------------------------------------------------------------------
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@@ -71,7 +71,7 @@ Evolution***. 2017, 8(1):28-36.
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 ### Download stats
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 [![download](http://www.bioconductor.org/shields/downloads/ggtree.svg)](https://bioconductor.org/packages/stats/bioc/ggtree)
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-[![total](https://img.shields.io/badge/downloads-21387/total-blue.svg?style=flat)](https://bioconductor.org/packages/stats/bioc/ggtree)
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+[![total](https://img.shields.io/badge/downloads-21527/total-blue.svg?style=flat)](https://bioconductor.org/packages/stats/bioc/ggtree)
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 [![month](https://img.shields.io/badge/downloads-1156/month-blue.svg?style=flat)](https://bioconductor.org/packages/stats/bioc/ggtree)
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 <img src="docs/images/dlstats.png" width="890"/>
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