guangchuang yu authored on 26/09/2016 09:20:07
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@@ -48,7 +48,10 @@ mdfiles: |
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Rscript -e 'library(ypages); gendoc("private/index.md", "blue", "docs/index.md")';\
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Rscript -e 'library(ypages); gendoc("private/documentation.md", "blue", "docs/documentation.md")';\
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Rscript -e 'library(ypages); gendoc("private/featuredArticles.md", "blue", "docs/featuredArticles.md")';\
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- Rscript -e 'library(ypages); gendoc("private/faq.md", "blue", "docs/faq.md")'
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+ Rscript -e 'library(ypages); gendoc("private/faq.md", "blue", "docs/faq.md")';\
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+ cd docs;\ |
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+ ln -f -s ../mysoftware/* ./ |
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+ |
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svnignore: |
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svn propset svn:ignore -F .svnignore . |
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new file mode 100644 |
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@@ -0,0 +1,216 @@ |
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+<!DOCTYPE html> |
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+<html lang="en"> |
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+ <head> |
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+ <meta charset="utf-8"> |
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+ <meta http-equiv="X-UA-Compatible" content="IE=edge"> |
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+ <meta name="viewport" content="width=device-width, initial-scale=1.0"> |
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+ |
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+ <meta name="author" content="Guangchuang Yu"> |
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+ <link rel="canonical" href="https://guangchuangyu.github.io/ggtree/ChIPseeker/"> |
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+ <link rel="shortcut icon" href="../img/favicon.ico"> |
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+ |
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+ <title>ChIPseeker - ggtree</title> |
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+ |
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+ <link href="../css/bootstrap-custom.min.css" rel="stylesheet"> |
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+ <link href="../css/font-awesome-4.0.3.css" rel="stylesheet"> |
|
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+ <link rel="stylesheet" href="../css/highlight.css"> |
|
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+ <link href="../css/base.css" rel="stylesheet"> |
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+ |
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+ <!-- HTML5 shim and Respond.js IE8 support of HTML5 elements and media queries --> |
|
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+ <!--[if lt IE 9]> |
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+ <script src="https://oss.maxcdn.com/libs/html5shiv/3.7.0/html5shiv.js"></script> |
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+ <script src="https://oss.maxcdn.com/libs/respond.js/1.3.0/respond.min.js"></script> |
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+ <![endif]--> |
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+ |
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+ |
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+ <script> |
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+ (function(i,s,o,g,r,a,m){i['GoogleAnalyticsObject']=r;i[r]=i[r]||function(){
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+ (i[r].q=i[r].q||[]).push(arguments)},i[r].l=1*new Date();a=s.createElement(o), |
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+ m=s.getElementsByTagName(o)[0];a.async=1;a.src=g;m.parentNode.insertBefore(a,m) |
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+ })(window,document,'script','//www.google-analytics.com/analytics.js','ga'); |
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+ |
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+ ga('create', 'UA-77901140-1', 'guangchuangyu.github.io');
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+ ga('send', 'pageview');
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+ </script> |
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+ |
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+ </head> |
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+ |
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+ <body> |
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+ |
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+ <div class="navbar navbar-default navbar-fixed-top" role="navigation"> |
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+ <div class="container"> |
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+ |
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+ <!-- Collapsed navigation --> |
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+ <div class="navbar-header"> |
|
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+ <!-- Expander button --> |
|
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+ <button type="button" class="navbar-toggle" data-toggle="collapse" data-target=".navbar-collapse"> |
|
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+ <span class="sr-only">Toggle navigation</span> |
|
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+ <span class="icon-bar"></span> |
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+ <span class="icon-bar"></span> |
|
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+ <span class="icon-bar"></span> |
|
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+ </button> |
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+ |
|
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+ <!-- Main title --> |
|
| 54 |
+ <a class="navbar-brand" href="..">ggtree</a> |
|
| 55 |
+ </div> |
|
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+ |
|
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+ <!-- Expanded navigation --> |
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+ <div class="navbar-collapse collapse"> |
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+ <!-- Main navigation --> |
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+ <ul class="nav navbar-nav"> |
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+ |
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+ |
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+ <li > |
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+ <a href="..">Home</a> |
|
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+ </li> |
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+ |
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+ |
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+ |
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+ <li > |
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+ <a href="../documentation/">Documentation</a> |
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+ </li> |
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+ |
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+ |
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+ |
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+ <li > |
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+ <a href="../faq/">FAQ</a> |
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+ </li> |
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+ |
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+ |
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+ |
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+ <li > |
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+ <a href="../featuredArticles/">Featured Articles</a> |
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+ </li> |
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+ |
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+ |
|
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+ |
|
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+ <li class="dropdown active"> |
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+ <a href="#" class="dropdown-toggle" data-toggle="dropdown">My Software <b class="caret"></b></a> |
|
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+ <ul class="dropdown-menu"> |
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+ |
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+ |
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+<li class="active"> |
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+ <a href="./">ChIPseeker</a> |
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+</li> |
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+ |
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+ |
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+ |
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+<li > |
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+ <a href="../clusterProfiler/">clusterProfiler</a> |
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+</li> |
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+ |
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+ |
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+ |
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+<li > |
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+ <a href="../DOSE/">DOSE</a> |
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+</li> |
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+ |
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+ |
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+ |
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+<li > |
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+ <a href="../ggtree/">ggtree</a> |
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+</li> |
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+ |
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+ |
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+ |
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+<li > |
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+ <a href="../GOSemSim/">GOSemSim</a> |
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+</li> |
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+ |
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+ |
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+ |
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+<li > |
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+ <a href="../ReactomePA/">ReactomePA</a> |
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+</li> |
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+ |
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+ |
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+ </ul> |
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+ </li> |
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+ |
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+ |
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+ </ul> |
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+ |
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+ <!-- Search, Navigation and Repo links --> |
|
| 134 |
+ <ul class="nav navbar-nav navbar-right"> |
|
| 135 |
+ <li> |
|
| 136 |
+ <a href="#" data-toggle="modal" data-target="#mkdocs_search_modal"> |
|
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+ <i class="fa fa-search"></i> Search |
|
| 138 |
+ </a> |
|
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+ </li> |
|
| 140 |
+ <li > |
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+ <a rel="next" href="../featuredArticles/"> |
|
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+ <i class="fa fa-arrow-left"></i> Previous |
|
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+ </a> |
|
| 144 |
+ </li> |
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+ <li > |
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+ <a rel="prev" href="../clusterProfiler/"> |
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+ Next <i class="fa fa-arrow-right"></i> |
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+ </a> |
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+ </li> |
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+ |
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+ <li> |
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+ <a href="https://github.com/GuangchuangYu/ggtree"> |
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+ |
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+ <i class="fa fa-github"></i> |
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+ |
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+ GitHub |
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+ </a> |
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+ </li> |
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+ |
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+ </ul> |
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+ </div> |
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+ </div> |
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+</div> |
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+ |
|
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+ <div class="container"> |
|
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+ <div class="col-md-3"><div class="bs-sidebar hidden-print affix well" role="complementary"> |
|
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+ <ul class="nav bs-sidenav"> |
|
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+ |
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+ </ul> |
|
| 170 |
+</div></div> |
|
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+ <div class="col-md-9" role="main"> |
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+ |
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+<p><meta http-equiv="refresh" content="0; url=https://guangchuangyu.github.io/ChIPseeker" /></p></div> |
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+ </div> |
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+ |
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| 176 |
+ <footer class="col-md-12"> |
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+ <hr> |
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+ |
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+ <center>Copyright © 2016 <a href="https://guangchuangyu.github.io">Guangchuang Yu</a>.<div style="width:250px;margin:auto;"><script type="text/javascript" src="//rf.revolvermaps.com/0/0/7.js?i=5qpvv5zz7fp&m=0&c=ff0000&cr1=ffffff&sx=0" async="async"></script></div></center> |
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+ |
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+ <center>Documentation built with <a href="http://www.mkdocs.org/">MkDocs</a>.</center> |
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+ </footer> |
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+ |
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+ <script src="../js/jquery-1.10.2.min.js"></script> |
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+ <script src="../js/bootstrap-3.0.3.min.js"></script> |
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+ <script src="../js/highlight.pack.js"></script> |
|
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+ <script>var base_url = '..';</script> |
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+ <script data-main="../mkdocs/js/search.js" src="../mkdocs/js/require.js"></script> |
|
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+ <script src="../js/base.js"></script> |
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+ |
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+ <div class="modal" id="mkdocs_search_modal" tabindex="-1" role="dialog" aria-labelledby="Search Modal" aria-hidden="true"> |
|
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+ <div class="modal-dialog"> |
|
| 193 |
+ <div class="modal-content"> |
|
| 194 |
+ <div class="modal-header"> |
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+ <button type="button" class="close" data-dismiss="modal"><span aria-hidden="true">×</span><span class="sr-only">Close</span></button> |
|
| 196 |
+ <h4 class="modal-title" id="exampleModalLabel">Search</h4> |
|
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+ </div> |
|
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+ <div class="modal-body"> |
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+ <p> |
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+ From here you can search these documents. Enter |
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+ your search terms below. |
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+ </p> |
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+ <form role="form"> |
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+ <div class="form-group"> |
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+ <input type="text" class="form-control" placeholder="Search..." id="mkdocs-search-query"> |
|
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+ </div> |
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+ </form> |
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+ <div id="mkdocs-search-results"></div> |
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+ </div> |
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+ <div class="modal-footer"> |
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+ </div> |
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+ </div> |
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+ </div> |
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+ </div> |
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+ </body> |
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+</html> |
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\ No newline at end of file |
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new file mode 100644 |
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@@ -0,0 +1,216 @@ |
| 1 |
+<!DOCTYPE html> |
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+<html lang="en"> |
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+ <head> |
|
| 4 |
+ <meta charset="utf-8"> |
|
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+ <meta http-equiv="X-UA-Compatible" content="IE=edge"> |
|
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+ <meta name="viewport" content="width=device-width, initial-scale=1.0"> |
|
| 7 |
+ |
|
| 8 |
+ <meta name="author" content="Guangchuang Yu"> |
|
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+ <link rel="canonical" href="https://guangchuangyu.github.io/ggtree/DOSE/"> |
|
| 10 |
+ <link rel="shortcut icon" href="../img/favicon.ico"> |
|
| 11 |
+ |
|
| 12 |
+ <title>DOSE - ggtree</title> |
|
| 13 |
+ |
|
| 14 |
+ <link href="../css/bootstrap-custom.min.css" rel="stylesheet"> |
|
| 15 |
+ <link href="../css/font-awesome-4.0.3.css" rel="stylesheet"> |
|
| 16 |
+ <link rel="stylesheet" href="../css/highlight.css"> |
|
| 17 |
+ <link href="../css/base.css" rel="stylesheet"> |
|
| 18 |
+ |
|
| 19 |
+ <!-- HTML5 shim and Respond.js IE8 support of HTML5 elements and media queries --> |
|
| 20 |
+ <!--[if lt IE 9]> |
|
| 21 |
+ <script src="https://oss.maxcdn.com/libs/html5shiv/3.7.0/html5shiv.js"></script> |
|
| 22 |
+ <script src="https://oss.maxcdn.com/libs/respond.js/1.3.0/respond.min.js"></script> |
|
| 23 |
+ <![endif]--> |
|
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+ |
|
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+ |
|
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+ <script> |
|
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+ (function(i,s,o,g,r,a,m){i['GoogleAnalyticsObject']=r;i[r]=i[r]||function(){
|
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+ (i[r].q=i[r].q||[]).push(arguments)},i[r].l=1*new Date();a=s.createElement(o), |
|
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+ m=s.getElementsByTagName(o)[0];a.async=1;a.src=g;m.parentNode.insertBefore(a,m) |
|
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+ })(window,document,'script','//www.google-analytics.com/analytics.js','ga'); |
|
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+ |
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+ ga('create', 'UA-77901140-1', 'guangchuangyu.github.io');
|
|
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+ ga('send', 'pageview');
|
|
| 34 |
+ </script> |
|
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+ |
|
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+ </head> |
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+ |
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+ <body> |
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+ |
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+ <div class="navbar navbar-default navbar-fixed-top" role="navigation"> |
|
| 41 |
+ <div class="container"> |
|
| 42 |
+ |
|
| 43 |
+ <!-- Collapsed navigation --> |
|
| 44 |
+ <div class="navbar-header"> |
|
| 45 |
+ <!-- Expander button --> |
|
| 46 |
+ <button type="button" class="navbar-toggle" data-toggle="collapse" data-target=".navbar-collapse"> |
|
| 47 |
+ <span class="sr-only">Toggle navigation</span> |
|
| 48 |
+ <span class="icon-bar"></span> |
|
| 49 |
+ <span class="icon-bar"></span> |
|
| 50 |
+ <span class="icon-bar"></span> |
|
| 51 |
+ </button> |
|
| 52 |
+ |
|
| 53 |
+ <!-- Main title --> |
|
| 54 |
+ <a class="navbar-brand" href="..">ggtree</a> |
|
| 55 |
+ </div> |
|
| 56 |
+ |
|
| 57 |
+ <!-- Expanded navigation --> |
|
| 58 |
+ <div class="navbar-collapse collapse"> |
|
| 59 |
+ <!-- Main navigation --> |
|
| 60 |
+ <ul class="nav navbar-nav"> |
|
| 61 |
+ |
|
| 62 |
+ |
|
| 63 |
+ <li > |
|
| 64 |
+ <a href="..">Home</a> |
|
| 65 |
+ </li> |
|
| 66 |
+ |
|
| 67 |
+ |
|
| 68 |
+ |
|
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+ <li > |
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+ <a href="../documentation/">Documentation</a> |
|
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+ </li> |
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+ |
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+ |
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| 74 |
+ |
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+ <li > |
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+ <a href="../faq/">FAQ</a> |
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+ </li> |
|
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+ |
|
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+ |
|
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+ |
|
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+ <li > |
|
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+ <a href="../featuredArticles/">Featured Articles</a> |
|
| 83 |
+ </li> |
|
| 84 |
+ |
|
| 85 |
+ |
|
| 86 |
+ |
|
| 87 |
+ <li class="dropdown active"> |
|
| 88 |
+ <a href="#" class="dropdown-toggle" data-toggle="dropdown">My Software <b class="caret"></b></a> |
|
| 89 |
+ <ul class="dropdown-menu"> |
|
| 90 |
+ |
|
| 91 |
+ |
|
| 92 |
+<li > |
|
| 93 |
+ <a href="../ChIPseeker/">ChIPseeker</a> |
|
| 94 |
+</li> |
|
| 95 |
+ |
|
| 96 |
+ |
|
| 97 |
+ |
|
| 98 |
+<li > |
|
| 99 |
+ <a href="../clusterProfiler/">clusterProfiler</a> |
|
| 100 |
+</li> |
|
| 101 |
+ |
|
| 102 |
+ |
|
| 103 |
+ |
|
| 104 |
+<li class="active"> |
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| 105 |
+ <a href="./">DOSE</a> |
|
| 106 |
+</li> |
|
| 107 |
+ |
|
| 108 |
+ |
|
| 109 |
+ |
|
| 110 |
+<li > |
|
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+ <a href="../ggtree/">ggtree</a> |
|
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+</li> |
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+ |
|
| 114 |
+ |
|
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+ |
|
| 116 |
+<li > |
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+ <a href="../GOSemSim/">GOSemSim</a> |
|
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+</li> |
|
| 119 |
+ |
|
| 120 |
+ |
|
| 121 |
+ |
|
| 122 |
+<li > |
|
| 123 |
+ <a href="../ReactomePA/">ReactomePA</a> |
|
| 124 |
+</li> |
|
| 125 |
+ |
|
| 126 |
+ |
|
| 127 |
+ </ul> |
|
| 128 |
+ </li> |
|
| 129 |
+ |
|
| 130 |
+ |
|
| 131 |
+ </ul> |
|
| 132 |
+ |
|
| 133 |
+ <!-- Search, Navigation and Repo links --> |
|
| 134 |
+ <ul class="nav navbar-nav navbar-right"> |
|
| 135 |
+ <li> |
|
| 136 |
+ <a href="#" data-toggle="modal" data-target="#mkdocs_search_modal"> |
|
| 137 |
+ <i class="fa fa-search"></i> Search |
|
| 138 |
+ </a> |
|
| 139 |
+ </li> |
|
| 140 |
+ <li > |
|
| 141 |
+ <a rel="next" href="../clusterProfiler/"> |
|
| 142 |
+ <i class="fa fa-arrow-left"></i> Previous |
|
| 143 |
+ </a> |
|
| 144 |
+ </li> |
|
| 145 |
+ <li > |
|
| 146 |
+ <a rel="prev" href="../ggtree/"> |
|
| 147 |
+ Next <i class="fa fa-arrow-right"></i> |
|
| 148 |
+ </a> |
|
| 149 |
+ </li> |
|
| 150 |
+ |
|
| 151 |
+ <li> |
|
| 152 |
+ <a href="https://github.com/GuangchuangYu/ggtree"> |
|
| 153 |
+ |
|
| 154 |
+ <i class="fa fa-github"></i> |
|
| 155 |
+ |
|
| 156 |
+ GitHub |
|
| 157 |
+ </a> |
|
| 158 |
+ </li> |
|
| 159 |
+ |
|
| 160 |
+ </ul> |
|
| 161 |
+ </div> |
|
| 162 |
+ </div> |
|
| 163 |
+</div> |
|
| 164 |
+ |
|
| 165 |
+ <div class="container"> |
|
| 166 |
+ <div class="col-md-3"><div class="bs-sidebar hidden-print affix well" role="complementary"> |
|
| 167 |
+ <ul class="nav bs-sidenav"> |
|
| 168 |
+ |
|
| 169 |
+ </ul> |
|
| 170 |
+</div></div> |
|
| 171 |
+ <div class="col-md-9" role="main"> |
|
| 172 |
+ |
|
| 173 |
+<p><meta http-equiv="refresh" content="0; url=https://guangchuangyu.github.io/DOSE" /></p></div> |
|
| 174 |
+ </div> |
|
| 175 |
+ |
|
| 176 |
+ <footer class="col-md-12"> |
|
| 177 |
+ <hr> |
|
| 178 |
+ |
|
| 179 |
+ <center>Copyright © 2016 <a href="https://guangchuangyu.github.io">Guangchuang Yu</a>.<div style="width:250px;margin:auto;"><script type="text/javascript" src="//rf.revolvermaps.com/0/0/7.js?i=5qpvv5zz7fp&m=0&c=ff0000&cr1=ffffff&sx=0" async="async"></script></div></center> |
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| 180 |
+ |
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| 181 |
+ <center>Documentation built with <a href="http://www.mkdocs.org/">MkDocs</a>.</center> |
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| 182 |
+ </footer> |
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+ |
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| 184 |
+ <script src="../js/jquery-1.10.2.min.js"></script> |
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+ <script src="../js/bootstrap-3.0.3.min.js"></script> |
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+ <script src="../js/highlight.pack.js"></script> |
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+ <script>var base_url = '..';</script> |
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+ <script data-main="../mkdocs/js/search.js" src="../mkdocs/js/require.js"></script> |
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+ <div class="modal" id="mkdocs_search_modal" tabindex="-1" role="dialog" aria-labelledby="Search Modal" aria-hidden="true"> |
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+ <div class="modal-dialog"> |
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| 195 |
+ <button type="button" class="close" data-dismiss="modal"><span aria-hidden="true">×</span><span class="sr-only">Close</span></button> |
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| 196 |
+ <h4 class="modal-title" id="exampleModalLabel">Search</h4> |
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+ </div> |
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+ From here you can search these documents. Enter |
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+ your search terms below. |
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+ </p> |
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+ <div class="form-group"> |
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+ <input type="text" class="form-control" placeholder="Search..." id="mkdocs-search-query"> |
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+ <div class="modal-footer"> |
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+ </div> |
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+ </body> |
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+</html> |
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| 0 | 217 |
\ No newline at end of file |
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new file mode 100644 |
| ... | ... |
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| 1 |
+<!DOCTYPE html> |
|
| 2 |
+<html lang="en"> |
|
| 3 |
+ <head> |
|
| 4 |
+ <meta charset="utf-8"> |
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+ <meta http-equiv="X-UA-Compatible" content="IE=edge"> |
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| 6 |
+ <meta name="viewport" content="width=device-width, initial-scale=1.0"> |
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+ |
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+ <meta name="author" content="Guangchuang Yu"> |
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+ <link rel="canonical" href="https://guangchuangyu.github.io/ggtree/GOSemSim/"> |
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| 10 |
+ <link rel="shortcut icon" href="../img/favicon.ico"> |
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| 11 |
+ |
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| 12 |
+ <title>GOSemSim - ggtree</title> |
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| 13 |
+ |
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| 14 |
+ <link href="../css/bootstrap-custom.min.css" rel="stylesheet"> |
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| 15 |
+ <link href="../css/font-awesome-4.0.3.css" rel="stylesheet"> |
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+ <link rel="stylesheet" href="../css/highlight.css"> |
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| 17 |
+ <link href="../css/base.css" rel="stylesheet"> |
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+ |
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+ <!-- HTML5 shim and Respond.js IE8 support of HTML5 elements and media queries --> |
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+ <!--[if lt IE 9]> |
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+ <script src="https://oss.maxcdn.com/libs/html5shiv/3.7.0/html5shiv.js"></script> |
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+ <script src="https://oss.maxcdn.com/libs/respond.js/1.3.0/respond.min.js"></script> |
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+ <![endif]--> |
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| 24 |
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+ <script> |
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+ (function(i,s,o,g,r,a,m){i['GoogleAnalyticsObject']=r;i[r]=i[r]||function(){
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+ m=s.getElementsByTagName(o)[0];a.async=1;a.src=g;m.parentNode.insertBefore(a,m) |
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+ ga('create', 'UA-77901140-1', 'guangchuangyu.github.io');
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+ ga('send', 'pageview');
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+ |
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+ <body> |
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+ |
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+ <div class="navbar navbar-default navbar-fixed-top" role="navigation"> |
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+ <div class="container"> |
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+ |
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+ <!-- Collapsed navigation --> |
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| 44 |
+ <div class="navbar-header"> |
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+ <!-- Expander button --> |
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| 46 |
+ <button type="button" class="navbar-toggle" data-toggle="collapse" data-target=".navbar-collapse"> |
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+ <span class="sr-only">Toggle navigation</span> |
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+ <span class="icon-bar"></span> |
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+ <span class="icon-bar"></span> |
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+ </button> |
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+ |
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+ <!-- Main title --> |
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| 54 |
+ <a class="navbar-brand" href="..">ggtree</a> |
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+ </div> |
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+ |
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| 57 |
+ <!-- Expanded navigation --> |
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| 58 |
+ <div class="navbar-collapse collapse"> |
|
| 59 |
+ <!-- Main navigation --> |
|
| 60 |
+ <ul class="nav navbar-nav"> |
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| 61 |
+ |
|
| 62 |
+ |
|
| 63 |
+ <li > |
|
| 64 |
+ <a href="..">Home</a> |
|
| 65 |
+ </li> |
|
| 66 |
+ |
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| 67 |
+ |
|
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+ |
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+ <li > |
|
| 70 |
+ <a href="../documentation/">Documentation</a> |
|
| 71 |
+ </li> |
|
| 72 |
+ |
|
| 73 |
+ |
|
| 74 |
+ |
|
| 75 |
+ <li > |
|
| 76 |
+ <a href="../faq/">FAQ</a> |
|
| 77 |
+ </li> |
|
| 78 |
+ |
|
| 79 |
+ |
|
| 80 |
+ |
|
| 81 |
+ <li > |
|
| 82 |
+ <a href="../featuredArticles/">Featured Articles</a> |
|
| 83 |
+ </li> |
|
| 84 |
+ |
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| 85 |
+ |
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| 86 |
+ |
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| 87 |
+ <li class="dropdown active"> |
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| 88 |
+ <a href="#" class="dropdown-toggle" data-toggle="dropdown">My Software <b class="caret"></b></a> |
|
| 89 |
+ <ul class="dropdown-menu"> |
|
| 90 |
+ |
|
| 91 |
+ |
|
| 92 |
+<li > |
|
| 93 |
+ <a href="../ChIPseeker/">ChIPseeker</a> |
|
| 94 |
+</li> |
|
| 95 |
+ |
|
| 96 |
+ |
|
| 97 |
+ |
|
| 98 |
+<li > |
|
| 99 |
+ <a href="../clusterProfiler/">clusterProfiler</a> |
|
| 100 |
+</li> |
|
| 101 |
+ |
|
| 102 |
+ |
|
| 103 |
+ |
|
| 104 |
+<li > |
|
| 105 |
+ <a href="../DOSE/">DOSE</a> |
|
| 106 |
+</li> |
|
| 107 |
+ |
|
| 108 |
+ |
|
| 109 |
+ |
|
| 110 |
+<li > |
|
| 111 |
+ <a href="../ggtree/">ggtree</a> |
|
| 112 |
+</li> |
|
| 113 |
+ |
|
| 114 |
+ |
|
| 115 |
+ |
|
| 116 |
+<li class="active"> |
|
| 117 |
+ <a href="./">GOSemSim</a> |
|
| 118 |
+</li> |
|
| 119 |
+ |
|
| 120 |
+ |
|
| 121 |
+ |
|
| 122 |
+<li > |
|
| 123 |
+ <a href="../ReactomePA/">ReactomePA</a> |
|
| 124 |
+</li> |
|
| 125 |
+ |
|
| 126 |
+ |
|
| 127 |
+ </ul> |
|
| 128 |
+ </li> |
|
| 129 |
+ |
|
| 130 |
+ |
|
| 131 |
+ </ul> |
|
| 132 |
+ |
|
| 133 |
+ <!-- Search, Navigation and Repo links --> |
|
| 134 |
+ <ul class="nav navbar-nav navbar-right"> |
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| 135 |
+ <li> |
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+ <a href="#" data-toggle="modal" data-target="#mkdocs_search_modal"> |
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| 137 |
+ <i class="fa fa-search"></i> Search |
|
| 138 |
+ </a> |
|
| 139 |
+ </li> |
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| 140 |
+ <li > |
|
| 141 |
+ <a rel="next" href="../ggtree/"> |
|
| 142 |
+ <i class="fa fa-arrow-left"></i> Previous |
|
| 143 |
+ </a> |
|
| 144 |
+ </li> |
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| 145 |
+ <li > |
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| 146 |
+ <a rel="prev" href="../ReactomePA/"> |
|
| 147 |
+ Next <i class="fa fa-arrow-right"></i> |
|
| 148 |
+ </a> |
|
| 149 |
+ </li> |
|
| 150 |
+ |
|
| 151 |
+ <li> |
|
| 152 |
+ <a href="https://github.com/GuangchuangYu/ggtree"> |
|
| 153 |
+ |
|
| 154 |
+ <i class="fa fa-github"></i> |
|
| 155 |
+ |
|
| 156 |
+ GitHub |
|
| 157 |
+ </a> |
|
| 158 |
+ </li> |
|
| 159 |
+ |
|
| 160 |
+ </ul> |
|
| 161 |
+ </div> |
|
| 162 |
+ </div> |
|
| 163 |
+</div> |
|
| 164 |
+ |
|
| 165 |
+ <div class="container"> |
|
| 166 |
+ <div class="col-md-3"><div class="bs-sidebar hidden-print affix well" role="complementary"> |
|
| 167 |
+ <ul class="nav bs-sidenav"> |
|
| 168 |
+ |
|
| 169 |
+ </ul> |
|
| 170 |
+</div></div> |
|
| 171 |
+ <div class="col-md-9" role="main"> |
|
| 172 |
+ |
|
| 173 |
+<p><meta http-equiv="refresh" content="0; url=https://guangchuangyu.github.io/GOSemSim" /></p></div> |
|
| 174 |
+ </div> |
|
| 175 |
+ |
|
| 176 |
+ <footer class="col-md-12"> |
|
| 177 |
+ <hr> |
|
| 178 |
+ |
|
| 179 |
+ <center>Copyright © 2016 <a href="https://guangchuangyu.github.io">Guangchuang Yu</a>.<div style="width:250px;margin:auto;"><script type="text/javascript" src="//rf.revolvermaps.com/0/0/7.js?i=5qpvv5zz7fp&m=0&c=ff0000&cr1=ffffff&sx=0" async="async"></script></div></center> |
|
| 180 |
+ |
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| 181 |
+ <center>Documentation built with <a href="http://www.mkdocs.org/">MkDocs</a>.</center> |
|
| 182 |
+ </footer> |
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| 183 |
+ |
|
| 184 |
+ <script src="../js/jquery-1.10.2.min.js"></script> |
|
| 185 |
+ <script src="../js/bootstrap-3.0.3.min.js"></script> |
|
| 186 |
+ <script src="../js/highlight.pack.js"></script> |
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| 187 |
+ <script>var base_url = '..';</script> |
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| 188 |
+ <script data-main="../mkdocs/js/search.js" src="../mkdocs/js/require.js"></script> |
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+ <script src="../js/base.js"></script> |
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+ |
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+ <div class="modal" id="mkdocs_search_modal" tabindex="-1" role="dialog" aria-labelledby="Search Modal" aria-hidden="true"> |
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+ <div class="modal-dialog"> |
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+ <div class="modal-content"> |
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+ <div class="modal-header"> |
|
| 195 |
+ <button type="button" class="close" data-dismiss="modal"><span aria-hidden="true">×</span><span class="sr-only">Close</span></button> |
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+ <h4 class="modal-title" id="exampleModalLabel">Search</h4> |
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| 197 |
+ </div> |
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+ <div class="modal-body"> |
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+ <p> |
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+ From here you can search these documents. Enter |
|
| 201 |
+ your search terms below. |
|
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+ </p> |
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| 203 |
+ <form role="form"> |
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| 204 |
+ <div class="form-group"> |
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| 205 |
+ <input type="text" class="form-control" placeholder="Search..." id="mkdocs-search-query"> |
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| 206 |
+ </div> |
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| 207 |
+ </form> |
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+ <div id="mkdocs-search-results"></div> |
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+ </div> |
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+ </div> |
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+ </div> |
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+ </div> |
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| 215 |
+ </body> |
|
| 216 |
+</html> |
|
| 0 | 217 |
\ No newline at end of file |
| 1 | 218 |
new file mode 100644 |
| ... | ... |
@@ -0,0 +1,216 @@ |
| 1 |
+<!DOCTYPE html> |
|
| 2 |
+<html lang="en"> |
|
| 3 |
+ <head> |
|
| 4 |
+ <meta charset="utf-8"> |
|
| 5 |
+ <meta http-equiv="X-UA-Compatible" content="IE=edge"> |
|
| 6 |
+ <meta name="viewport" content="width=device-width, initial-scale=1.0"> |
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| 7 |
+ |
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| 8 |
+ <meta name="author" content="Guangchuang Yu"> |
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| 9 |
+ <link rel="canonical" href="https://guangchuangyu.github.io/ggtree/ReactomePA/"> |
|
| 10 |
+ <link rel="shortcut icon" href="../img/favicon.ico"> |
|
| 11 |
+ |
|
| 12 |
+ <title>ReactomePA - ggtree</title> |
|
| 13 |
+ |
|
| 14 |
+ <link href="../css/bootstrap-custom.min.css" rel="stylesheet"> |
|
| 15 |
+ <link href="../css/font-awesome-4.0.3.css" rel="stylesheet"> |
|
| 16 |
+ <link rel="stylesheet" href="../css/highlight.css"> |
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| 17 |
+ <link href="../css/base.css" rel="stylesheet"> |
|
| 18 |
+ |
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| 19 |
+ <!-- HTML5 shim and Respond.js IE8 support of HTML5 elements and media queries --> |
|
| 20 |
+ <!--[if lt IE 9]> |
|
| 21 |
+ <script src="https://oss.maxcdn.com/libs/html5shiv/3.7.0/html5shiv.js"></script> |
|
| 22 |
+ <script src="https://oss.maxcdn.com/libs/respond.js/1.3.0/respond.min.js"></script> |
|
| 23 |
+ <![endif]--> |
|
| 24 |
+ |
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+ |
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| 26 |
+ <script> |
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+ (function(i,s,o,g,r,a,m){i['GoogleAnalyticsObject']=r;i[r]=i[r]||function(){
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+ (i[r].q=i[r].q||[]).push(arguments)},i[r].l=1*new Date();a=s.createElement(o), |
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+ m=s.getElementsByTagName(o)[0];a.async=1;a.src=g;m.parentNode.insertBefore(a,m) |
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+ })(window,document,'script','//www.google-analytics.com/analytics.js','ga'); |
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+ |
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+ ga('create', 'UA-77901140-1', 'guangchuangyu.github.io');
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| 33 |
+ ga('send', 'pageview');
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+ </script> |
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+ |
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+ </head> |
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+ |
|
| 38 |
+ <body> |
|
| 39 |
+ |
|
| 40 |
+ <div class="navbar navbar-default navbar-fixed-top" role="navigation"> |
|
| 41 |
+ <div class="container"> |
|
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+ |
|
| 43 |
+ <!-- Collapsed navigation --> |
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| 44 |
+ <div class="navbar-header"> |
|
| 45 |
+ <!-- Expander button --> |
|
| 46 |
+ <button type="button" class="navbar-toggle" data-toggle="collapse" data-target=".navbar-collapse"> |
|
| 47 |
+ <span class="sr-only">Toggle navigation</span> |
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| 48 |
+ <span class="icon-bar"></span> |
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| 49 |
+ <span class="icon-bar"></span> |
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| 50 |
+ <span class="icon-bar"></span> |
|
| 51 |
+ </button> |
|
| 52 |
+ |
|
| 53 |
+ <!-- Main title --> |
|
| 54 |
+ <a class="navbar-brand" href="..">ggtree</a> |
|
| 55 |
+ </div> |
|
| 56 |
+ |
|
| 57 |
+ <!-- Expanded navigation --> |
|
| 58 |
+ <div class="navbar-collapse collapse"> |
|
| 59 |
+ <!-- Main navigation --> |
|
| 60 |
+ <ul class="nav navbar-nav"> |
|
| 61 |
+ |
|
| 62 |
+ |
|
| 63 |
+ <li > |
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| 64 |
+ <a href="..">Home</a> |
|
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+ </li> |
|
| 66 |
+ |
|
| 67 |
+ |
|
| 68 |
+ |
|
| 69 |
+ <li > |
|
| 70 |
+ <a href="../documentation/">Documentation</a> |
|
| 71 |
+ </li> |
|
| 72 |
+ |
|
| 73 |
+ |
|
| 74 |
+ |
|
| 75 |
+ <li > |
|
| 76 |
+ <a href="../faq/">FAQ</a> |
|
| 77 |
+ </li> |
|
| 78 |
+ |
|
| 79 |
+ |
|
| 80 |
+ |
|
| 81 |
+ <li > |
|
| 82 |
+ <a href="../featuredArticles/">Featured Articles</a> |
|
| 83 |
+ </li> |
|
| 84 |
+ |
|
| 85 |
+ |
|
| 86 |
+ |
|
| 87 |
+ <li class="dropdown active"> |
|
| 88 |
+ <a href="#" class="dropdown-toggle" data-toggle="dropdown">My Software <b class="caret"></b></a> |
|
| 89 |
+ <ul class="dropdown-menu"> |
|
| 90 |
+ |
|
| 91 |
+ |
|
| 92 |
+<li > |
|
| 93 |
+ <a href="../ChIPseeker/">ChIPseeker</a> |
|
| 94 |
+</li> |
|
| 95 |
+ |
|
| 96 |
+ |
|
| 97 |
+ |
|
| 98 |
+<li > |
|
| 99 |
+ <a href="../clusterProfiler/">clusterProfiler</a> |
|
| 100 |
+</li> |
|
| 101 |
+ |
|
| 102 |
+ |
|
| 103 |
+ |
|
| 104 |
+<li > |
|
| 105 |
+ <a href="../DOSE/">DOSE</a> |
|
| 106 |
+</li> |
|
| 107 |
+ |
|
| 108 |
+ |
|
| 109 |
+ |
|
| 110 |
+<li > |
|
| 111 |
+ <a href="../ggtree/">ggtree</a> |
|
| 112 |
+</li> |
|
| 113 |
+ |
|
| 114 |
+ |
|
| 115 |
+ |
|
| 116 |
+<li > |
|
| 117 |
+ <a href="../GOSemSim/">GOSemSim</a> |
|
| 118 |
+</li> |
|
| 119 |
+ |
|
| 120 |
+ |
|
| 121 |
+ |
|
| 122 |
+<li class="active"> |
|
| 123 |
+ <a href="./">ReactomePA</a> |
|
| 124 |
+</li> |
|
| 125 |
+ |
|
| 126 |
+ |
|
| 127 |
+ </ul> |
|
| 128 |
+ </li> |
|
| 129 |
+ |
|
| 130 |
+ |
|
| 131 |
+ </ul> |
|
| 132 |
+ |
|
| 133 |
+ <!-- Search, Navigation and Repo links --> |
|
| 134 |
+ <ul class="nav navbar-nav navbar-right"> |
|
| 135 |
+ <li> |
|
| 136 |
+ <a href="#" data-toggle="modal" data-target="#mkdocs_search_modal"> |
|
| 137 |
+ <i class="fa fa-search"></i> Search |
|
| 138 |
+ </a> |
|
| 139 |
+ </li> |
|
| 140 |
+ <li > |
|
| 141 |
+ <a rel="next" href="../GOSemSim/"> |
|
| 142 |
+ <i class="fa fa-arrow-left"></i> Previous |
|
| 143 |
+ </a> |
|
| 144 |
+ </li> |
|
| 145 |
+ <li class="disabled"> |
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+ <a rel="prev" > |
|
| 147 |
+ Next <i class="fa fa-arrow-right"></i> |
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| 148 |
+ </a> |
|
| 149 |
+ </li> |
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+ |
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+ <li> |
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+ <a href="https://github.com/GuangchuangYu/ggtree"> |
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+ |
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+ <i class="fa fa-github"></i> |
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+ |
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| 156 |
+ GitHub |
|
| 157 |
+ </a> |
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| 158 |
+ </li> |
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| 159 |
+ |
|
| 160 |
+ </ul> |
|
| 161 |
+ </div> |
|
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+ </div> |
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| 163 |
+</div> |
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| 164 |
+ |
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| 165 |
+ <div class="container"> |
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+ <div class="col-md-3"><div class="bs-sidebar hidden-print affix well" role="complementary"> |
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+ <ul class="nav bs-sidenav"> |
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+ |
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+ </ul> |
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| 170 |
+</div></div> |
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+ <div class="col-md-9" role="main"> |
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| 172 |
+ |
|
| 173 |
+<p><meta http-equiv="refresh" content="0; url=https://guangchuangyu.github.io/ReactomePA" /></p></div> |
|
| 174 |
+ </div> |
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+ |
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| 176 |
+ <footer class="col-md-12"> |
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| 177 |
+ <hr> |
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| 178 |
+ |
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| 179 |
+ <center>Copyright © 2016 <a href="https://guangchuangyu.github.io">Guangchuang Yu</a>.<div style="width:250px;margin:auto;"><script type="text/javascript" src="//rf.revolvermaps.com/0/0/7.js?i=5qpvv5zz7fp&m=0&c=ff0000&cr1=ffffff&sx=0" async="async"></script></div></center> |
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| 180 |
+ |
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+ <center>Documentation built with <a href="http://www.mkdocs.org/">MkDocs</a>.</center> |
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+ </footer> |
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+ |
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+ <script src="../js/jquery-1.10.2.min.js"></script> |
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+ <script src="../js/bootstrap-3.0.3.min.js"></script> |
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+ <div class="modal" id="mkdocs_search_modal" tabindex="-1" role="dialog" aria-labelledby="Search Modal" aria-hidden="true"> |
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+ <div class="modal-dialog"> |
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+ <div class="modal-content"> |
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+ <div class="modal-header"> |
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+ <button type="button" class="close" data-dismiss="modal"><span aria-hidden="true">×</span><span class="sr-only">Close</span></button> |
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| 196 |
+ <h4 class="modal-title" id="exampleModalLabel">Search</h4> |
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+ </div> |
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+ <div class="modal-body"> |
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+ <p> |
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+ From here you can search these documents. Enter |
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+ your search terms below. |
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+ </p> |
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+ <form role="form"> |
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+ <div class="form-group"> |
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+ <input type="text" class="form-control" placeholder="Search..." id="mkdocs-search-query"> |
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+ </div> |
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+ </form> |
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+ <div id="mkdocs-search-results"></div> |
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+ </div> |
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+ <div class="modal-footer"> |
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+ </div> |
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+ </div> |
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+ </div> |
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+ </div> |
|
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+ </body> |
|
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+</html> |
|
| 0 | 217 |
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| 1 | 218 |
new file mode 100644 |
| ... | ... |
@@ -0,0 +1,216 @@ |
| 1 |
+<!DOCTYPE html> |
|
| 2 |
+<html lang="en"> |
|
| 3 |
+ <head> |
|
| 4 |
+ <meta charset="utf-8"> |
|
| 5 |
+ <meta http-equiv="X-UA-Compatible" content="IE=edge"> |
|
| 6 |
+ <meta name="viewport" content="width=device-width, initial-scale=1.0"> |
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+ |
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+ <meta name="author" content="Guangchuang Yu"> |
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+ <link rel="canonical" href="https://guangchuangyu.github.io/ggtree/clusterProfiler/"> |
|
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+ <link rel="shortcut icon" href="../img/favicon.ico"> |
|
| 11 |
+ |
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+ <title>clusterProfiler - ggtree</title> |
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+ |
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+ <link href="../css/bootstrap-custom.min.css" rel="stylesheet"> |
|
| 15 |
+ <link href="../css/font-awesome-4.0.3.css" rel="stylesheet"> |
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+ <link rel="stylesheet" href="../css/highlight.css"> |
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+ <link href="../css/base.css" rel="stylesheet"> |
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+ |
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+ <!-- HTML5 shim and Respond.js IE8 support of HTML5 elements and media queries --> |
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+ <!--[if lt IE 9]> |
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+ <script src="https://oss.maxcdn.com/libs/html5shiv/3.7.0/html5shiv.js"></script> |
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+ <script src="https://oss.maxcdn.com/libs/respond.js/1.3.0/respond.min.js"></script> |
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+ <![endif]--> |
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+ |
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+ |
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+ <script> |
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+ (function(i,s,o,g,r,a,m){i['GoogleAnalyticsObject']=r;i[r]=i[r]||function(){
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+ (i[r].q=i[r].q||[]).push(arguments)},i[r].l=1*new Date();a=s.createElement(o), |
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+ m=s.getElementsByTagName(o)[0];a.async=1;a.src=g;m.parentNode.insertBefore(a,m) |
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+ })(window,document,'script','//www.google-analytics.com/analytics.js','ga'); |
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+ |
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+ ga('create', 'UA-77901140-1', 'guangchuangyu.github.io');
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+ ga('send', 'pageview');
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+ </script> |
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+ |
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+ </head> |
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+ |
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+ <body> |
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+ |
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+ <div class="navbar navbar-default navbar-fixed-top" role="navigation"> |
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+ <div class="container"> |
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+ |
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+ <!-- Collapsed navigation --> |
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+ <div class="navbar-header"> |
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+ <!-- Expander button --> |
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+ <button type="button" class="navbar-toggle" data-toggle="collapse" data-target=".navbar-collapse"> |
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+ <span class="sr-only">Toggle navigation</span> |
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+ <span class="icon-bar"></span> |
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+ <span class="icon-bar"></span> |
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+ <span class="icon-bar"></span> |
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+ </button> |
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+ |
|
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+ <!-- Main title --> |
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+ <a class="navbar-brand" href="..">ggtree</a> |
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+ </div> |
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+ |
|
| 57 |
+ <!-- Expanded navigation --> |
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+ <div class="navbar-collapse collapse"> |
|
| 59 |
+ <!-- Main navigation --> |
|
| 60 |
+ <ul class="nav navbar-nav"> |
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+ |
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+ |
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+ <li > |
|
| 64 |
+ <a href="..">Home</a> |
|
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+ </li> |
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+ |
|
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+ |
|
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+ <li > |
|
| 70 |
+ <a href="../documentation/">Documentation</a> |
|
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+ </li> |
|
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+ |
|
| 73 |
+ |
|
| 74 |
+ |
|
| 75 |
+ <li > |
|
| 76 |
+ <a href="../faq/">FAQ</a> |
|
| 77 |
+ </li> |
|
| 78 |
+ |
|
| 79 |
+ |
|
| 80 |
+ |
|
| 81 |
+ <li > |
|
| 82 |
+ <a href="../featuredArticles/">Featured Articles</a> |
|
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+ </li> |
|
| 84 |
+ |
|
| 85 |
+ |
|
| 86 |
+ |
|
| 87 |
+ <li class="dropdown active"> |
|
| 88 |
+ <a href="#" class="dropdown-toggle" data-toggle="dropdown">My Software <b class="caret"></b></a> |
|
| 89 |
+ <ul class="dropdown-menu"> |
|
| 90 |
+ |
|
| 91 |
+ |
|
| 92 |
+<li > |
|
| 93 |
+ <a href="../ChIPseeker/">ChIPseeker</a> |
|
| 94 |
+</li> |
|
| 95 |
+ |
|
| 96 |
+ |
|
| 97 |
+ |
|
| 98 |
+<li class="active"> |
|
| 99 |
+ <a href="./">clusterProfiler</a> |
|
| 100 |
+</li> |
|
| 101 |
+ |
|
| 102 |
+ |
|
| 103 |
+ |
|
| 104 |
+<li > |
|
| 105 |
+ <a href="../DOSE/">DOSE</a> |
|
| 106 |
+</li> |
|
| 107 |
+ |
|
| 108 |
+ |
|
| 109 |
+ |
|
| 110 |
+<li > |
|
| 111 |
+ <a href="../ggtree/">ggtree</a> |
|
| 112 |
+</li> |
|
| 113 |
+ |
|
| 114 |
+ |
|
| 115 |
+ |
|
| 116 |
+<li > |
|
| 117 |
+ <a href="../GOSemSim/">GOSemSim</a> |
|
| 118 |
+</li> |
|
| 119 |
+ |
|
| 120 |
+ |
|
| 121 |
+ |
|
| 122 |
+<li > |
|
| 123 |
+ <a href="../ReactomePA/">ReactomePA</a> |
|
| 124 |
+</li> |
|
| 125 |
+ |
|
| 126 |
+ |
|
| 127 |
+ </ul> |
|
| 128 |
+ </li> |
|
| 129 |
+ |
|
| 130 |
+ |
|
| 131 |
+ </ul> |
|
| 132 |
+ |
|
| 133 |
+ <!-- Search, Navigation and Repo links --> |
|
| 134 |
+ <ul class="nav navbar-nav navbar-right"> |
|
| 135 |
+ <li> |
|
| 136 |
+ <a href="#" data-toggle="modal" data-target="#mkdocs_search_modal"> |
|
| 137 |
+ <i class="fa fa-search"></i> Search |
|
| 138 |
+ </a> |
|
| 139 |
+ </li> |
|
| 140 |
+ <li > |
|
| 141 |
+ <a rel="next" href="../ChIPseeker/"> |
|
| 142 |
+ <i class="fa fa-arrow-left"></i> Previous |
|
| 143 |
+ </a> |
|
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+ </li> |
|
| 145 |
+ <li > |
|
| 146 |
+ <a rel="prev" href="../DOSE/"> |
|
| 147 |
+ Next <i class="fa fa-arrow-right"></i> |
|
| 148 |
+ </a> |
|
| 149 |
+ </li> |
|
| 150 |
+ |
|
| 151 |
+ <li> |
|
| 152 |
+ <a href="https://github.com/GuangchuangYu/ggtree"> |
|
| 153 |
+ |
|
| 154 |
+ <i class="fa fa-github"></i> |
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| 155 |
+ |
|
| 156 |
+ GitHub |
|
| 157 |
+ </a> |
|
| 158 |
+ </li> |
|
| 159 |
+ |
|
| 160 |
+ </ul> |
|
| 161 |
+ </div> |
|
| 162 |
+ </div> |
|
| 163 |
+</div> |
|
| 164 |
+ |
|
| 165 |
+ <div class="container"> |
|
| 166 |
+ <div class="col-md-3"><div class="bs-sidebar hidden-print affix well" role="complementary"> |
|
| 167 |
+ <ul class="nav bs-sidenav"> |
|
| 168 |
+ |
|
| 169 |
+ </ul> |
|
| 170 |
+</div></div> |
|
| 171 |
+ <div class="col-md-9" role="main"> |
|
| 172 |
+ |
|
| 173 |
+<p><meta http-equiv="refresh" content="0; url=https://guangchuangyu.github.io/clusterProfiler" /></p></div> |
|
| 174 |
+ </div> |
|
| 175 |
+ |
|
| 176 |
+ <footer class="col-md-12"> |
|
| 177 |
+ <hr> |
|
| 178 |
+ |
|
| 179 |
+ <center>Copyright © 2016 <a href="https://guangchuangyu.github.io">Guangchuang Yu</a>.<div style="width:250px;margin:auto;"><script type="text/javascript" src="//rf.revolvermaps.com/0/0/7.js?i=5qpvv5zz7fp&m=0&c=ff0000&cr1=ffffff&sx=0" async="async"></script></div></center> |
|
| 180 |
+ |
|
| 181 |
+ <center>Documentation built with <a href="http://www.mkdocs.org/">MkDocs</a>.</center> |
|
| 182 |
+ </footer> |
|
| 183 |
+ |
|
| 184 |
+ <script src="../js/jquery-1.10.2.min.js"></script> |
|
| 185 |
+ <script src="../js/bootstrap-3.0.3.min.js"></script> |
|
| 186 |
+ <script src="../js/highlight.pack.js"></script> |
|
| 187 |
+ <script>var base_url = '..';</script> |
|
| 188 |
+ <script data-main="../mkdocs/js/search.js" src="../mkdocs/js/require.js"></script> |
|
| 189 |
+ <script src="../js/base.js"></script> |
|
| 190 |
+ |
|
| 191 |
+ <div class="modal" id="mkdocs_search_modal" tabindex="-1" role="dialog" aria-labelledby="Search Modal" aria-hidden="true"> |
|
| 192 |
+ <div class="modal-dialog"> |
|
| 193 |
+ <div class="modal-content"> |
|
| 194 |
+ <div class="modal-header"> |
|
| 195 |
+ <button type="button" class="close" data-dismiss="modal"><span aria-hidden="true">×</span><span class="sr-only">Close</span></button> |
|
| 196 |
+ <h4 class="modal-title" id="exampleModalLabel">Search</h4> |
|
| 197 |
+ </div> |
|
| 198 |
+ <div class="modal-body"> |
|
| 199 |
+ <p> |
|
| 200 |
+ From here you can search these documents. Enter |
|
| 201 |
+ your search terms below. |
|
| 202 |
+ </p> |
|
| 203 |
+ <form role="form"> |
|
| 204 |
+ <div class="form-group"> |
|
| 205 |
+ <input type="text" class="form-control" placeholder="Search..." id="mkdocs-search-query"> |
|
| 206 |
+ </div> |
|
| 207 |
+ </form> |
|
| 208 |
+ <div id="mkdocs-search-results"></div> |
|
| 209 |
+ </div> |
|
| 210 |
+ <div class="modal-footer"> |
|
| 211 |
+ </div> |
|
| 212 |
+ </div> |
|
| 213 |
+ </div> |
|
| 214 |
+ </div> |
|
| 215 |
+ </body> |
|
| 216 |
+</html> |
|
| 0 | 217 |
\ No newline at end of file |
| ... | ... |
@@ -90,37 +90,37 @@ |
| 90 | 90 |
|
| 91 | 91 |
|
| 92 | 92 |
<li > |
| 93 |
- <a href="../mysoftware/ChIPseeker/">ChIPseeker</a> |
|
| 93 |
+ <a href="../ChIPseeker/">ChIPseeker</a> |
|
| 94 | 94 |
</li> |
| 95 | 95 |
|
| 96 | 96 |
|
| 97 | 97 |
|
| 98 | 98 |
<li > |
| 99 |
- <a href="../mysoftware/clusterProfiler/">clusterProfiler</a> |
|
| 99 |
+ <a href="../clusterProfiler/">clusterProfiler</a> |
|
| 100 | 100 |
</li> |
| 101 | 101 |
|
| 102 | 102 |
|
| 103 | 103 |
|
| 104 | 104 |
<li > |
| 105 |
- <a href="../mysoftware/DOSE/">DOSE</a> |
|
| 105 |
+ <a href="../DOSE/">DOSE</a> |
|
| 106 | 106 |
</li> |
| 107 | 107 |
|
| 108 | 108 |
|
| 109 | 109 |
|
| 110 | 110 |
<li > |
| 111 |
- <a href="../mysoftware/ggtree/">ggtree</a> |
|
| 111 |
+ <a href="../ggtree/">ggtree</a> |
|
| 112 | 112 |
</li> |
| 113 | 113 |
|
| 114 | 114 |
|
| 115 | 115 |
|
| 116 | 116 |
<li > |
| 117 |
- <a href="../mysoftware/GOSemSim/">GOSemSim</a> |
|
| 117 |
+ <a href="../GOSemSim/">GOSemSim</a> |
|
| 118 | 118 |
</li> |
| 119 | 119 |
|
| 120 | 120 |
|
| 121 | 121 |
|
| 122 | 122 |
<li > |
| 123 |
- <a href="../mysoftware/ReactomePA/">ReactomePA</a> |
|
| 123 |
+ <a href="../ReactomePA/">ReactomePA</a> |
|
| 124 | 124 |
</li> |
| 125 | 125 |
|
| 126 | 126 |
|
| ... | ... |
@@ -90,37 +90,37 @@ |
| 90 | 90 |
|
| 91 | 91 |
|
| 92 | 92 |
<li > |
| 93 |
- <a href="../mysoftware/ChIPseeker/">ChIPseeker</a> |
|
| 93 |
+ <a href="../ChIPseeker/">ChIPseeker</a> |
|
| 94 | 94 |
</li> |
| 95 | 95 |
|
| 96 | 96 |
|
| 97 | 97 |
|
| 98 | 98 |
<li > |
| 99 |
- <a href="../mysoftware/clusterProfiler/">clusterProfiler</a> |
|
| 99 |
+ <a href="../clusterProfiler/">clusterProfiler</a> |
|
| 100 | 100 |
</li> |
| 101 | 101 |
|
| 102 | 102 |
|
| 103 | 103 |
|
| 104 | 104 |
<li > |
| 105 |
- <a href="../mysoftware/DOSE/">DOSE</a> |
|
| 105 |
+ <a href="../DOSE/">DOSE</a> |
|
| 106 | 106 |
</li> |
| 107 | 107 |
|
| 108 | 108 |
|
| 109 | 109 |
|
| 110 | 110 |
<li > |
| 111 |
- <a href="../mysoftware/ggtree/">ggtree</a> |
|
| 111 |
+ <a href="../ggtree/">ggtree</a> |
|
| 112 | 112 |
</li> |
| 113 | 113 |
|
| 114 | 114 |
|
| 115 | 115 |
|
| 116 | 116 |
<li > |
| 117 |
- <a href="../mysoftware/GOSemSim/">GOSemSim</a> |
|
| 117 |
+ <a href="../GOSemSim/">GOSemSim</a> |
|
| 118 | 118 |
</li> |
| 119 | 119 |
|
| 120 | 120 |
|
| 121 | 121 |
|
| 122 | 122 |
<li > |
| 123 |
- <a href="../mysoftware/ReactomePA/">ReactomePA</a> |
|
| 123 |
+ <a href="../ReactomePA/">ReactomePA</a> |
|
| 124 | 124 |
</li> |
| 125 | 125 |
|
| 126 | 126 |
|
| ... | ... |
@@ -90,37 +90,37 @@ |
| 90 | 90 |
|
| 91 | 91 |
|
| 92 | 92 |
<li > |
| 93 |
- <a href="../mysoftware/ChIPseeker/">ChIPseeker</a> |
|
| 93 |
+ <a href="../ChIPseeker/">ChIPseeker</a> |
|
| 94 | 94 |
</li> |
| 95 | 95 |
|
| 96 | 96 |
|
| 97 | 97 |
|
| 98 | 98 |
<li > |
| 99 |
- <a href="../mysoftware/clusterProfiler/">clusterProfiler</a> |
|
| 99 |
+ <a href="../clusterProfiler/">clusterProfiler</a> |
|
| 100 | 100 |
</li> |
| 101 | 101 |
|
| 102 | 102 |
|
| 103 | 103 |
|
| 104 | 104 |
<li > |
| 105 |
- <a href="../mysoftware/DOSE/">DOSE</a> |
|
| 105 |
+ <a href="../DOSE/">DOSE</a> |
|
| 106 | 106 |
</li> |
| 107 | 107 |
|
| 108 | 108 |
|
| 109 | 109 |
|
| 110 | 110 |
<li > |
| 111 |
- <a href="../mysoftware/ggtree/">ggtree</a> |
|
| 111 |
+ <a href="../ggtree/">ggtree</a> |
|
| 112 | 112 |
</li> |
| 113 | 113 |
|
| 114 | 114 |
|
| 115 | 115 |
|
| 116 | 116 |
<li > |
| 117 |
- <a href="../mysoftware/GOSemSim/">GOSemSim</a> |
|
| 117 |
+ <a href="../GOSemSim/">GOSemSim</a> |
|
| 118 | 118 |
</li> |
| 119 | 119 |
|
| 120 | 120 |
|
| 121 | 121 |
|
| 122 | 122 |
<li > |
| 123 |
- <a href="../mysoftware/ReactomePA/">ReactomePA</a> |
|
| 123 |
+ <a href="../ReactomePA/">ReactomePA</a> |
|
| 124 | 124 |
</li> |
| 125 | 125 |
|
| 126 | 126 |
|
| ... | ... |
@@ -143,7 +143,7 @@ |
| 143 | 143 |
</a> |
| 144 | 144 |
</li> |
| 145 | 145 |
<li > |
| 146 |
- <a rel="prev" href="../mysoftware/ChIPseeker/"> |
|
| 146 |
+ <a rel="prev" href="../ChIPseeker/"> |
|
| 147 | 147 |
Next <i class="fa fa-arrow-right"></i> |
| 148 | 148 |
</a> |
| 149 | 149 |
</li> |
| ... | ... |
@@ -211,11 +211,11 @@ |
| 211 | 211 |
} |
| 212 | 212 |
</style> |
| 213 | 213 |
|
| 214 |
-<div id = 'chart16f2218d1abb' class = 'rChart morris'></div> |
|
| 214 |
+<div id = 'chart223ede02dc5' class = 'rChart morris'></div> |
|
| 215 | 215 |
|
| 216 | 216 |
<script type='text/javascript'> |
| 217 | 217 |
var chartParams = {
|
| 218 |
- "element": "chart16f2218d1abb", |
|
| 218 |
+ "element": "chart223ede02dc5", |
|
| 219 | 219 |
"width": 800, |
| 220 | 220 |
"height": 400, |
| 221 | 221 |
"xkey": "year", |
| ... | ... |
@@ -229,7 +229,7 @@ |
| 229 | 229 |
"pubid": "HtEfBTGE9r8C" |
| 230 | 230 |
} |
| 231 | 231 |
], |
| 232 |
-"id": "chart16f2218d1abb", |
|
| 232 |
+"id": "chart223ede02dc5", |
|
| 233 | 233 |
"labels": "cites" |
| 234 | 234 |
}, |
| 235 | 235 |
chartType = "Bar" |
| 236 | 236 |
new file mode 100644 |
| ... | ... |
@@ -0,0 +1,216 @@ |
| 1 |
+<!DOCTYPE html> |
|
| 2 |
+<html lang="en"> |
|
| 3 |
+ <head> |
|
| 4 |
+ <meta charset="utf-8"> |
|
| 5 |
+ <meta http-equiv="X-UA-Compatible" content="IE=edge"> |
|
| 6 |
+ <meta name="viewport" content="width=device-width, initial-scale=1.0"> |
|
| 7 |
+ |
|
| 8 |
+ <meta name="author" content="Guangchuang Yu"> |
|
| 9 |
+ <link rel="canonical" href="https://guangchuangyu.github.io/ggtree/ggtree/"> |
|
| 10 |
+ <link rel="shortcut icon" href="../img/favicon.ico"> |
|
| 11 |
+ |
|
| 12 |
+ <title>ggtree - ggtree</title> |
|
| 13 |
+ |
|
| 14 |
+ <link href="../css/bootstrap-custom.min.css" rel="stylesheet"> |
|
| 15 |
+ <link href="../css/font-awesome-4.0.3.css" rel="stylesheet"> |
|
| 16 |
+ <link rel="stylesheet" href="../css/highlight.css"> |
|
| 17 |
+ <link href="../css/base.css" rel="stylesheet"> |
|
| 18 |
+ |
|
| 19 |
+ <!-- HTML5 shim and Respond.js IE8 support of HTML5 elements and media queries --> |
|
| 20 |
+ <!--[if lt IE 9]> |
|
| 21 |
+ <script src="https://oss.maxcdn.com/libs/html5shiv/3.7.0/html5shiv.js"></script> |
|
| 22 |
+ <script src="https://oss.maxcdn.com/libs/respond.js/1.3.0/respond.min.js"></script> |
|
| 23 |
+ <![endif]--> |
|
| 24 |
+ |
|
| 25 |
+ |
|
| 26 |
+ <script> |
|
| 27 |
+ (function(i,s,o,g,r,a,m){i['GoogleAnalyticsObject']=r;i[r]=i[r]||function(){
|
|
| 28 |
+ (i[r].q=i[r].q||[]).push(arguments)},i[r].l=1*new Date();a=s.createElement(o), |
|
| 29 |
+ m=s.getElementsByTagName(o)[0];a.async=1;a.src=g;m.parentNode.insertBefore(a,m) |
|
| 30 |
+ })(window,document,'script','//www.google-analytics.com/analytics.js','ga'); |
|
| 31 |
+ |
|
| 32 |
+ ga('create', 'UA-77901140-1', 'guangchuangyu.github.io');
|
|
| 33 |
+ ga('send', 'pageview');
|
|
| 34 |
+ </script> |
|
| 35 |
+ |
|
| 36 |
+ </head> |
|
| 37 |
+ |
|
| 38 |
+ <body> |
|
| 39 |
+ |
|
| 40 |
+ <div class="navbar navbar-default navbar-fixed-top" role="navigation"> |
|
| 41 |
+ <div class="container"> |
|
| 42 |
+ |
|
| 43 |
+ <!-- Collapsed navigation --> |
|
| 44 |
+ <div class="navbar-header"> |
|
| 45 |
+ <!-- Expander button --> |
|
| 46 |
+ <button type="button" class="navbar-toggle" data-toggle="collapse" data-target=".navbar-collapse"> |
|
| 47 |
+ <span class="sr-only">Toggle navigation</span> |
|
| 48 |
+ <span class="icon-bar"></span> |
|
| 49 |
+ <span class="icon-bar"></span> |
|
| 50 |
+ <span class="icon-bar"></span> |
|
| 51 |
+ </button> |
|
| 52 |
+ |
|
| 53 |
+ <!-- Main title --> |
|
| 54 |
+ <a class="navbar-brand" href="..">ggtree</a> |
|
| 55 |
+ </div> |
|
| 56 |
+ |
|
| 57 |
+ <!-- Expanded navigation --> |
|
| 58 |
+ <div class="navbar-collapse collapse"> |
|
| 59 |
+ <!-- Main navigation --> |
|
| 60 |
+ <ul class="nav navbar-nav"> |
|
| 61 |
+ |
|
| 62 |
+ |
|
| 63 |
+ <li > |
|
| 64 |
+ <a href="..">Home</a> |
|
| 65 |
+ </li> |
|
| 66 |
+ |
|
| 67 |
+ |
|
| 68 |
+ |
|
| 69 |
+ <li > |
|
| 70 |
+ <a href="../documentation/">Documentation</a> |
|
| 71 |
+ </li> |
|
| 72 |
+ |
|
| 73 |
+ |
|
| 74 |
+ |
|
| 75 |
+ <li > |
|
| 76 |
+ <a href="../faq/">FAQ</a> |
|
| 77 |
+ </li> |
|
| 78 |
+ |
|
| 79 |
+ |
|
| 80 |
+ |
|
| 81 |
+ <li > |
|
| 82 |
+ <a href="../featuredArticles/">Featured Articles</a> |
|
| 83 |
+ </li> |
|
| 84 |
+ |
|
| 85 |
+ |
|
| 86 |
+ |
|
| 87 |
+ <li class="dropdown active"> |
|
| 88 |
+ <a href="#" class="dropdown-toggle" data-toggle="dropdown">My Software <b class="caret"></b></a> |
|
| 89 |
+ <ul class="dropdown-menu"> |
|
| 90 |
+ |
|
| 91 |
+ |
|
| 92 |
+<li > |
|
| 93 |
+ <a href="../ChIPseeker/">ChIPseeker</a> |
|
| 94 |
+</li> |
|
| 95 |
+ |
|
| 96 |
+ |
|
| 97 |
+ |
|
| 98 |
+<li > |
|
| 99 |
+ <a href="../clusterProfiler/">clusterProfiler</a> |
|
| 100 |
+</li> |
|
| 101 |
+ |
|
| 102 |
+ |
|
| 103 |
+ |
|
| 104 |
+<li > |
|
| 105 |
+ <a href="../DOSE/">DOSE</a> |
|
| 106 |
+</li> |
|
| 107 |
+ |
|
| 108 |
+ |
|
| 109 |
+ |
|
| 110 |
+<li class="active"> |
|