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@@ -1,7 +1,7 @@ |
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Package: ggtree |
| 2 | 2 |
Type: Package |
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Title: an R package for visualization of tree and annotation data |
| 4 |
-Version: 3.3.0.901 |
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+Version: 3.3.1 |
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| 5 | 5 |
Authors@R: c( |
| 6 | 6 |
person("Guangchuang", "Yu", email = "guangchuangyu@gmail.com", role = c("aut", "cre", "cph"), comment = c(ORCID = "0000-0002-6485-8781")),
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| 7 | 7 |
person("Tommy Tsan-Yuk", "Lam", email = "tylam.tommy@gmail.com", role = c("aut", "ths")),
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| ... | ... |
@@ -2,11 +2,8 @@ |
| 2 | 2 |
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| 3 | 3 |
# TODO LIST |
| 4 | 4 |
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-+ use graph layout to visualize tree |
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- - <https://github.com/YuLab-SMU/ggtree/issues/460> |
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- + igraph layout |
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- + graphlayouts: <https://cran.r-project.org/web/packages/graphlayouts/index.html> |
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- + TreeAndLeaf layout: <https://www.bioconductor.org/packages/TreeAndLeaf> |
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+ |
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++ TreeAndLeaf layout: <https://www.bioconductor.org/packages/TreeAndLeaf> |
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| 10 | 7 |
+ `phylogeography` |
| 11 | 8 |
- <https://stackoverflow.com/questions/68668788/phylogeography-how-to-combine-phylogenetic-tree-and-geographic-map-and-create> |
| 12 | 9 |
+ `phylomorphospace` |
| ... | ... |
@@ -29,8 +26,11 @@ |
| 29 | 26 |
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--> |
| 31 | 28 |
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-# ggtree 3.3.0.901 |
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- |
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+# ggtree 3.3.1 |
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+ |
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++ use graph layouts to visualize tree (2021-12-10, Fri, #460, #461) |
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+ - igraph layout |
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+ - graphlayouts: <https://cran.r-project.org/web/packages/graphlayouts/index.html> |
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| 34 | 34 |
+ `scale_color_subtree` and `scale_colour_subtree` to color subtree via taxa group information (e.g., cutree, or kmeans) (2021-12-01, Wed) |
| 35 | 35 |
+ set `na.value = 'white'` in `msaplot()` (2021-10-29, Fri) |
| 36 | 36 |
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