Browse code

update docs

guangchuang yu authored on 01/11/2017 02:35:00
Showing 11 changed files

... ...
@@ -4,9 +4,9 @@ Title: an R package for visualization and annotation of phylogenetic trees with
4 4
     their covariates and other associated data
5 5
 Version: 1.11.0
6 6
 Authors@R: c(
7
-	   person("Guangchuang", "Yu", email = "guangchuangyu@gmail.com", role = c("aut", "cre", "cph")),
8
-	   person("Tommy Tsan-Yuk", "Lam", email = "tylam.tommy@gmail.com", rol = c("aut", "ths")),
9
-	   person("Justin", "Silverman", email = "jsilve24@gmail.com", rol = "ctb")
7
+	   person("Guangchuang", "Yu",     email = "guangchuangyu@gmail.com", role = c("aut", "cre", "cph")),
8
+	   person("Tommy Tsan-Yuk", "Lam", email = "tylam.tommy@gmail.com",   role = c("aut", "ths")),
9
+	   person("Justin", "Silverman",   email = "jsilve24@gmail.com",      role = "ctb")
10 10
 	   )
11 11
 Maintainer: Guangchuang Yu <guangchuangyu@gmail.com>
12 12
 Description: 'ggtree' extends the 'ggplot2' plotting system which implemented
... ...
@@ -4,9 +4,9 @@ ggtree: an R package for visualization and annotation of phylogenetic trees with
4 4
 
5 5
 <img src="https://raw.githubusercontent.com/Bioconductor/BiocStickers/master/ggtree/ggtree.png" height="200" align="right" />
6 6
 
7
-[![releaseVersion](https://img.shields.io/badge/release%20version-1.8.2-green.svg?style=flat)](https://bioconductor.org/packages/ggtree) [![develVersion](https://img.shields.io/badge/devel%20version-1.9.4-green.svg?style=flat)](https://github.com/guangchuangyu/ggtree) [![Bioc](http://www.bioconductor.org/shields/years-in-bioc/ggtree.svg)](https://www.bioconductor.org/packages/devel/bioc/html/ggtree.html#since) [![total](https://img.shields.io/badge/downloads-19498/total-blue.svg?style=flat)](https://bioconductor.org/packages/stats/bioc/ggtree) [![month](https://img.shields.io/badge/downloads-941/month-blue.svg?style=flat)](https://bioconductor.org/packages/stats/bioc/ggtree)
7
+[![releaseVersion](https://img.shields.io/badge/release%20version-1.10.0-green.svg?style=flat)](https://bioconductor.org/packages/ggtree) [![develVersion](https://img.shields.io/badge/devel%20version-1.11.0-green.svg?style=flat)](https://github.com/guangchuangyu/ggtree) [![Bioc](http://www.bioconductor.org/shields/years-in-bioc/ggtree.svg)](https://www.bioconductor.org/packages/devel/bioc/html/ggtree.html#since) [![total](https://img.shields.io/badge/downloads-20560/total-blue.svg?style=flat)](https://bioconductor.org/packages/stats/bioc/ggtree) [![month](https://img.shields.io/badge/downloads-986/month-blue.svg?style=flat)](https://bioconductor.org/packages/stats/bioc/ggtree)
8 8
 
9
-[![Project Status: Active - The project has reached a stable, usable state and is being actively developed.](http://www.repostatus.org/badges/latest/active.svg)](http://www.repostatus.org/#active) [![codecov](https://codecov.io/gh/GuangchuangYu/ggtree/branch/master/graph/badge.svg)](https://codecov.io/gh/GuangchuangYu/ggtree) [![Last-changedate](https://img.shields.io/badge/last%20change-2017--10--01-green.svg)](https://github.com/GuangchuangYu/ggtree/commits/master) [![GitHub forks](https://img.shields.io/github/forks/GuangchuangYu/ggtree.svg)](https://github.com/GuangchuangYu/ggtree/network) [![GitHub stars](https://img.shields.io/github/stars/GuangchuangYu/ggtree.svg)](https://github.com/GuangchuangYu/ggtree/stargazers) [![Awesome](https://cdn.rawgit.com/sindresorhus/awesome/d7305f38d29fed78fa85652e3a63e154dd8e8829/media/badge.svg)](https://awesome-r.com/#awesome-r-graphic-displays)
9
+[![Project Status: Active - The project has reached a stable, usable state and is being actively developed.](http://www.repostatus.org/badges/latest/active.svg)](http://www.repostatus.org/#active) [![codecov](https://codecov.io/gh/GuangchuangYu/ggtree/branch/master/graph/badge.svg)](https://codecov.io/gh/GuangchuangYu/ggtree) [![Last-changedate](https://img.shields.io/badge/last%20change-2017--11--01-green.svg)](https://github.com/GuangchuangYu/ggtree/commits/master) [![GitHub forks](https://img.shields.io/github/forks/GuangchuangYu/ggtree.svg)](https://github.com/GuangchuangYu/ggtree/network) [![GitHub stars](https://img.shields.io/github/stars/GuangchuangYu/ggtree.svg)](https://github.com/GuangchuangYu/ggtree/stargazers) [![Awesome](https://cdn.rawgit.com/sindresorhus/awesome/d7305f38d29fed78fa85652e3a63e154dd8e8829/media/badge.svg)](https://awesome-r.com/#awesome-r-graphic-displays)
10 10
 
11 11
 [![platform](http://www.bioconductor.org/shields/availability/devel/ggtree.svg)](https://www.bioconductor.org/packages/devel/bioc/html/ggtree.html#archives) [![Build Status](http://www.bioconductor.org/shields/build/devel/bioc/ggtree.svg)](https://bioconductor.org/checkResults/devel/bioc-LATEST/ggtree/) [![Linux/Mac Travis Build Status](https://img.shields.io/travis/GuangchuangYu/ggtree/master.svg?label=Mac%20OSX%20%26%20Linux)](https://travis-ci.org/GuangchuangYu/ggtree) [![AppVeyor Build Status](https://img.shields.io/appveyor/ci/Guangchuangyu/ggtree/master.svg?label=Windows)](https://ci.appveyor.com/project/GuangchuangYu/ggtree) [![Backers on Open Collective](https://opencollective.com/ggtree/backers/badge.svg)](#backers) [![Sponsors on Open Collective](https://opencollective.com/ggtree/sponsors/badge.svg)](#sponsors)
12 12
 
... ...
@@ -27,7 +27,7 @@ Please cite the following article when using `ggtree`:
27 27
 
28 28
 **G Yu**, DK Smith, H Zhu, Y Guan, TTY Lam<sup>\*</sup>. ggtree: an R package for visualization and annotation of phylogenetic trees with their covariates and other associated data. ***Methods in Ecology and Evolution***. 2017, 8(1):28-36.
29 29
 
30
-[![doi](https://img.shields.io/badge/doi-10.1111/2041--210X.12628-green.svg?style=flat)](http://dx.doi.org/10.1111/2041-210X.12628) [![Altmetric](https://img.shields.io/badge/Altmetric-342-green.svg?style=flat)](https://www.altmetric.com/details/10533079) [![citation](https://img.shields.io/badge/cited%20by-40-green.svg?style=flat)](https://scholar.google.com.hk/scholar?oi=bibs&hl=en&cites=7268358477862164627)
30
+[![doi](https://img.shields.io/badge/doi-10.1111/2041--210X.12628-green.svg?style=flat)](http://dx.doi.org/10.1111/2041-210X.12628) [![Altmetric](https://img.shields.io/badge/Altmetric-338-green.svg?style=flat)](https://www.altmetric.com/details/10533079) [![citation](https://img.shields.io/badge/cited%20by-42-green.svg?style=flat)](https://scholar.google.com.hk/scholar?oi=bibs&hl=en&cites=7268358477862164627)
31 31
 
32 32
 ------------------------------------------------------------------------
33 33
 
... ...
@@ -37,7 +37,7 @@ Please cite the following article when using `ggtree`:
37 37
 
38 38
 ### Download stats
39 39
 
40
-[![download](http://www.bioconductor.org/shields/downloads/ggtree.svg)](https://bioconductor.org/packages/stats/bioc/ggtree) [![total](https://img.shields.io/badge/downloads-19498/total-blue.svg?style=flat)](https://bioconductor.org/packages/stats/bioc/ggtree) [![month](https://img.shields.io/badge/downloads-941/month-blue.svg?style=flat)](https://bioconductor.org/packages/stats/bioc/ggtree)
40
+[![download](http://www.bioconductor.org/shields/downloads/ggtree.svg)](https://bioconductor.org/packages/stats/bioc/ggtree) [![total](https://img.shields.io/badge/downloads-20560/total-blue.svg?style=flat)](https://bioconductor.org/packages/stats/bioc/ggtree) [![month](https://img.shields.io/badge/downloads-986/month-blue.svg?style=flat)](https://bioconductor.org/packages/stats/bioc/ggtree)
41 41
 
42 42
 <img src="docs/images/dlstats.png" width="890"/>
43 43
 
44 44
Binary files a/docs/images/citation.png and b/docs/images/citation.png differ
45 45
Binary files a/docs/images/dlstats.png and b/docs/images/dlstats.png differ
... ...
@@ -345,7 +345,7 @@
345 345
 
346 346
 				<p><link rel="stylesheet" href="https://guangchuangyu.github.io/css/font-awesome.min.css"> <link rel="stylesheet" href="https://guangchuangyu.github.io/css/academicons.min.css"></p>
347 347
 <p><img src="https://raw.githubusercontent.com/Bioconductor/BiocStickers/master/ggtree/ggtree.png" height="200" align="right" /></p>
348
-<p><a href="https://bioconductor.org/packages/ggtree"><img src="https://img.shields.io/badge/release%20version-1.8.2-blue.svg?style=flat" alt="releaseVersion" /></a> <a href="https://github.com/guangchuangyu/ggtree"><img src="https://img.shields.io/badge/devel%20version-1.9.4-blue.svg?style=flat" alt="develVersion" /></a> <a href="https://bioconductor.org/packages/stats/bioc/ggtree"><img src="https://img.shields.io/badge/downloads-19498/total-blue.svg?style=flat" alt="total" /></a> <a href="https://bioconductor.org/packages/stats/bioc/ggtree"><img src="https://img.shields.io/badge/downloads-941/month-blue.svg?style=flat" alt="month" /></a></p>
348
+<p><a href="https://bioconductor.org/packages/ggtree"><img src="https://img.shields.io/badge/release%20version-1.10.0-blue.svg?style=flat" alt="releaseVersion" /></a> <a href="https://github.com/guangchuangyu/ggtree"><img src="https://img.shields.io/badge/devel%20version-1.9.4-blue.svg?style=flat" alt="develVersion" /></a> <a href="https://bioconductor.org/packages/stats/bioc/ggtree"><img src="https://img.shields.io/badge/downloads-20560/total-blue.svg?style=flat" alt="total" /></a> <a href="https://bioconductor.org/packages/stats/bioc/ggtree"><img src="https://img.shields.io/badge/downloads-986/month-blue.svg?style=flat" alt="month" /></a></p>
349 349
 <p>The <code>ggtree</code> package extending the <em>ggplot2</em> package. It based on grammar of graphics and takes all the good parts of <em>ggplot2</em>. <em>ggtree</em> is designed for not only viewing phylogenetic tree but also displaying annotation data on the tree. <em>ggtree</em> is released within the <a href="https://bioconductor.org/packages/ggtree/">Bioconductor</a> project and the source code is hosted on <a href="https://github.com/GuangchuangYu/ggtree"><i class="fa fa-github fa-lg"></i> GitHub</a>.</p>
350 350
 <div id="authors" class="section level2">
351 351
 <h2><i class="fa fa-user"></i> Authors</h2>
... ...
@@ -354,7 +354,7 @@
354 354
 <div id="citation" class="section level2">
355 355
 <h2><i class="fa fa-book"></i> Citation</h2>
356 356
 <p>Please cite the following article when using <code>ggtree</code>:</p>
357
-<p><a href="http://dx.doi.org/10.1111/2041-210X.12628"><img src="https://img.shields.io/badge/doi-10.1111/2041--210X.12628-blue.svg?style=flat" alt="doi" /></a> <a href="https://www.altmetric.com/details/10533079"><img src="https://img.shields.io/badge/Altmetric-342-blue.svg?style=flat" alt="Altmetric" /></a> <a href="https://scholar.google.com.hk/scholar?oi=bibs&amp;hl=en&amp;cites=7268358477862164627"><img src="https://img.shields.io/badge/cited%20by-40-blue.svg?style=flat" alt="citation" /></a></p>
357
+<p><a href="http://dx.doi.org/10.1111/2041-210X.12628"><img src="https://img.shields.io/badge/doi-10.1111/2041--210X.12628-blue.svg?style=flat" alt="doi" /></a> <a href="https://www.altmetric.com/details/10533079"><img src="https://img.shields.io/badge/Altmetric-338-blue.svg?style=flat" alt="Altmetric" /></a> <a href="https://scholar.google.com.hk/scholar?oi=bibs&amp;hl=en&amp;cites=7268358477862164627"><img src="https://img.shields.io/badge/cited%20by-42-blue.svg?style=flat" alt="citation" /></a></p>
358 358
 <p><strong>G Yu</strong>, DK Smith, H Zhu, Y Guan, TTY Lam<sup>*</sup>. ggtree: an R package for visualization and annotation of phylogenetic trees with their covariates and other associated data. <strong><em>Methods in Ecology and Evolution</em></strong>. 2017, 8(1):28-36.</p>
359 359
 </div>
360 360
 <div id="featured-articles" class="section level2">
... ...
@@ -79,11 +79,11 @@ http://dx.doi.org/10.1111/2041-210X.12628
79 79
       
80 80
       <guid>https://guangchuangyu.github.io/ggtree/tweets/</guid>
81 81
       <description>Leave me a message on 
82
-Now on https://t.co/50tYJLLZqc - a spotlight on the Top Tools for R Programming:
82
+Thank you so much @guangchuangyu! #ggtree is the easy way for my phd data analysis &amp;lt;3 love it!
83
+&amp;mdash; Francisco Romero (@pinchehippie) October 17, 2017  Now on https://t.co/50tYJLLZqc - a spotlight on the Top Tools for R Programming:
83 84
 ggtree made the list!https://t.co/YQv7FeegpM pic.twitter.com/hGn7nBfbEJ
84
-&amp;mdash; LabWorm (@TheLabWorm) September 27, 2017 geom_hilight_encircle for unrooted layout #ggtree #rstats pic.twitter.com/1wIwgwUduf
85
-&amp;mdash; Guangchuang Yu (@guangchuangyu) September 12, 2017 New Post: Plotting a Sequential Binary Partition on a Tree in R @alex_washburne @guangchuangyu https://t.co/6jQKMof5aW
86
-&amp;mdash; Justin Silverman (@inschool4life) September 21, 2017 blog: Introduction to ggplot2 and to ggtree πŸ“πŸ“ˆπŸ‘¨β€πŸ”¬πŸ‘©β€πŸ”¬ #rstats #phdchat https://t.</description>
85
+&amp;mdash; LabWorm (@TheLabWorm) September 27, 2017  geom_hilight_encircle for unrooted layout #ggtree #rstats pic.twitter.com/1wIwgwUduf
86
+&amp;mdash; Guangchuang Yu (@guangchuangyu) September 12, 2017  New Post: Plotting a Sequential Binary Partition on a Tree in R @alex_washburne @guangchuangyu https://t.</description>
87 87
     </item>
88 88
     
89 89
   </channel>
... ...
@@ -344,61 +344,117 @@
344 344
 
345 345
 			<p><link rel="stylesheet" href="https://guangchuangyu.github.io/css/font-awesome.min.css"></p>
346 346
 <p><font size="4"><strong>Leave me a message on <a href="https://twitter.com/hashtag/ggtree"><i class="fa fa-twitter fa-lg"></i></a></strong></font></p>
347
-<p><blockquote class="twitter-tweet"><p lang="en" dir="ltr">Now on <a href="https://t.co/50tYJLLZqc">https://t.co/50tYJLLZqc</a> - a spotlight on the Top Tools for R Programming:<br>ggtree made the list!<a href="https://t.co/YQv7FeegpM">https://t.co/YQv7FeegpM</a> <a href="https://t.co/hGn7nBfbEJ">pic.twitter.com/hGn7nBfbEJ</a></p>&mdash; LabWorm (@TheLabWorm) <a href="https://twitter.com/TheLabWorm/status/912971120198012929?ref_src=twsrc%5Etfw">September 27, 2017</a></blockquote>
348
-<script async src="//platform.twitter.com/widgets.js" charset="utf-8"></script><blockquote class="twitter-tweet"><p lang="en" dir="ltr">geom_hilight_encircle for unrooted layout <a href="https://twitter.com/hashtag/ggtree?src=hash&amp;ref_src=twsrc%5Etfw">#ggtree</a> <a href="https://twitter.com/hashtag/rstats?src=hash&amp;ref_src=twsrc%5Etfw">#rstats</a> <a href="https://t.co/1wIwgwUduf">pic.twitter.com/1wIwgwUduf</a></p>&mdash; Guangchuang Yu (@guangchuangyu) <a href="https://twitter.com/guangchuangyu/status/907543915686793217?ref_src=twsrc%5Etfw">September 12, 2017</a></blockquote>
349
-<script async src="//platform.twitter.com/widgets.js" charset="utf-8"></script><blockquote class="twitter-tweet"><p lang="en" dir="ltr">New Post: Plotting a Sequential Binary Partition on a Tree in R <a href="https://twitter.com/alex_washburne?ref_src=twsrc%5Etfw">@alex_washburne</a> <a href="https://twitter.com/guangchuangyu?ref_src=twsrc%5Etfw">@guangchuangyu</a> <a href="https://t.co/6jQKMof5aW">https://t.co/6jQKMof5aW</a></p>&mdash; Justin Silverman (@inschool4life) <a href="https://twitter.com/inschool4life/status/910671384069722112?ref_src=twsrc%5Etfw">September 21, 2017</a></blockquote>
350
-<script async src="//platform.twitter.com/widgets.js" charset="utf-8"></script><blockquote class="twitter-tweet"><p lang="sv" dir="ltr">blog: Introduction to ggplot2 and to ggtree πŸ“πŸ“ˆπŸ‘¨β€πŸ”¬πŸ‘©β€πŸ”¬ <a href="https://twitter.com/hashtag/rstats?src=hash&amp;ref_src=twsrc%5Etfw">#rstats</a> <a href="https://twitter.com/hashtag/phdchat?src=hash&amp;ref_src=twsrc%5Etfw">#phdchat</a> <a href="https://t.co/ndmRitxpeH">https://t.co/ndmRitxpeH</a></p>&mdash; Jean (@JeanManguy) <a href="https://twitter.com/JeanManguy/status/903786057182957568?ref_src=twsrc%5Etfw">September 2, 2017</a></blockquote>
351
-<script async src="//platform.twitter.com/widgets.js" charset="utf-8"></script><blockquote class="twitter-tweet"><p lang="en" dir="ltr">The ggtree package looks like a cool way to visualize hierarchical data<a href="https://t.co/spsqLkqeVG">https://t.co/spsqLkqeVG</a> <a href="https://t.co/GRODlrBahW">pic.twitter.com/GRODlrBahW</a></p>&mdash; Nathan Brouwer (@lobrowR) <a href="https://twitter.com/lobrowR/status/899635001247059969?ref_src=twsrc%5Etfw">August 21, 2017</a></blockquote>
352
-<script async src="//platform.twitter.com/widgets.js" charset="utf-8"></script><blockquote class="twitter-tweet"><p lang="en" dir="ltr">New ggtree-based visualization in R package phylofactor! Below are the top three factors (= 4 bins) of mammalian body mass. <a href="https://t.co/ruT4OZF7gW">pic.twitter.com/ruT4OZF7gW</a></p>&mdash; Alex Washburne (@alex_washburne) <a href="https://twitter.com/alex_washburne/status/898729425168080897?ref_src=twsrc%5Etfw">August 19, 2017</a></blockquote>
353
-<script async src="//platform.twitter.com/widgets.js" charset="utf-8"></script><blockquote class="twitter-tweet"><p lang="en" dir="ltr">Possible to combine <a href="https://twitter.com/hashtag/ggjoy?src=hash&amp;ref_src=twsrc%5Etfw">#ggjoy</a> with <a href="https://twitter.com/hashtag/ggtree?src=hash&amp;ref_src=twsrc%5Etfw">#ggtree</a> ? My gg-fu is weak. <a href="https://twitter.com/hashtag/rstats?src=hash&amp;ref_src=twsrc%5Etfw">#rstats</a> <a href="https://twitter.com/hashtag/DataViz?src=hash&amp;ref_src=twsrc%5Etfw">#DataViz</a> <a href="https://twitter.com/hashtag/JoyPlot?src=hash&amp;ref_src=twsrc%5Etfw">#JoyPlot</a> <a href="https://t.co/4FICfER6Oa">https://t.co/4FICfER6Oa</a></p>&mdash; Libby Megna (@LibbyMegna) <a href="https://twitter.com/LibbyMegna/status/891144389715783680?ref_src=twsrc%5Etfw">July 29, 2017</a></blockquote>
354
-<script async src="//platform.twitter.com/widgets.js" charset="utf-8"></script><blockquote class="twitter-tweet"><p lang="en" dir="ltr">Second post with an update on how to add tip shapes and colours to ggtree <a href="https://t.co/ezWF4TVQst">https://t.co/ezWF4TVQst</a></p>&mdash; Anthony Underwood (@bioinformAnt) <a href="https://twitter.com/bioinformAnt/status/883301626022375424?ref_src=twsrc%5Etfw">July 7, 2017</a></blockquote>
355
-<script async src="//platform.twitter.com/widgets.js" charset="utf-8"></script><blockquote class="twitter-tweet"><p lang="en" dir="ltr">Yes and no. No manual assignment =&gt; randomly assigned colours. Even with manual spec ggtree is still much quicker than making fig by hand πŸ˜€</p>&mdash; Anthony Underwood (@bioinformAnt) <a href="https://twitter.com/bioinformAnt/status/883246854695256064?ref_src=twsrc%5Etfw">July 7, 2017</a></blockquote>
356
-<script async src="//platform.twitter.com/widgets.js" charset="utf-8"></script><blockquote class="twitter-tweet"><p lang="en" dir="ltr">I&#39;d use ggtree from Bioconductor as you can really tailor all the fonts etc..<a href="https://t.co/NAcbFswGYB">https://t.co/NAcbFswGYB</a></p>&mdash; Susan Holmes (@SherlockpHolmes) <a href="https://twitter.com/SherlockpHolmes/status/877576023109390336?ref_src=twsrc%5Etfw">June 21, 2017</a></blockquote>
357
-<script async src="//platform.twitter.com/widgets.js" charset="utf-8"></script><blockquote class="twitter-tweet"><p lang="en" dir="ltr">How phylogenies and associated heatmaps can be drawn using the <a href="https://twitter.com/hashtag/ggtree?src=hash&amp;ref_src=twsrc%5Etfw">#ggtree</a> package in <a href="https://twitter.com/hashtag/R?src=hash&amp;ref_src=twsrc%5Etfw">#R</a> <a href="https://t.co/rlBvGxUEBO">https://t.co/rlBvGxUEBO</a></p>&mdash; L. Rosaleny (@lorelai66) <a href="https://twitter.com/lorelai66/status/875594411584782337?ref_src=twsrc%5Etfw">June 16, 2017</a></blockquote>
358
-<script async src="//platform.twitter.com/widgets.js" charset="utf-8"></script><blockquote class="twitter-tweet"><p lang="en" dir="ltr">I think most use a combination of icandy/itol/phandango. I prefer ggtree, which you can code and customise in R.</p>&mdash; Mat Beale (@typeMAT12) <a href="https://twitter.com/typeMAT12/status/871775262152810496?ref_src=twsrc%5Etfw">June 5, 2017</a></blockquote>
359
-<script async src="//platform.twitter.com/widgets.js" charset="utf-8"></script><blockquote class="twitter-tweet"><p lang="en" dir="ltr">You like emijo &amp; <a href="https://twitter.com/hashtag/RStats?src=hash&amp;ref_src=twsrc%5Etfw">#RStats</a> ? Then check this out! phylomoji with ggtree and emojifont : <a href="https://t.co/9BcZhjfkXm">https://t.co/9BcZhjfkXm</a> <a href="https://t.co/pP1aMPRozS">pic.twitter.com/pP1aMPRozS</a></p>&mdash; thinkR (@thinkR_fr) <a href="https://twitter.com/thinkR_fr/status/867408666852511744?ref_src=twsrc%5Etfw">May 24, 2017</a></blockquote>
360
-<script async src="//platform.twitter.com/widgets.js" charset="utf-8"></script><blockquote class="twitter-tweet"><p lang="en" dir="ltr">as someone who doesn&#39;t build a lot of trees, but does a lot of <a href="https://twitter.com/hashtag/Rstats?src=hash&amp;ref_src=twsrc%5Etfw">#Rstats</a> β€”<a href="https://twitter.com/hashtag/ggtree?src=hash&amp;ref_src=twsrc%5Etfw">#ggtree</a> is SO GREAT <a href="https://t.co/ABe3TsIVPR">https://t.co/ABe3TsIVPR</a></p>&mdash; Sean Leonard (@spleonard1) <a href="https://twitter.com/spleonard1/status/857665638600507393?ref_src=twsrc%5Etfw">April 27, 2017</a></blockquote>
361
-<script async src="//platform.twitter.com/widgets.js" charset="utf-8"></script><blockquote class="twitter-tweet"><p lang="en" dir="ltr"><a href="https://twitter.com/guangchuangyu?ref_src=twsrc%5Etfw">@guangchuangyu</a> by the way our new paper used ggtree! Thanks for your hard work! <a href="https://t.co/mXD6E0Ddt0">https://t.co/mXD6E0Ddt0</a></p>&mdash; Justin Silverman (@inschool4life) <a href="https://twitter.com/inschool4life/status/840181267542994944?ref_src=twsrc%5Etfw">March 10, 2017</a></blockquote>
362
-<script async src="//platform.twitter.com/widgets.js" charset="utf-8"></script><blockquote class="twitter-tweet"><p lang="en" dir="ltr">I cannot get over how beautiful the graphics produced by GGTREE are. Cannot wait to use it! <a href="https://t.co/8qFO9yKLlp">https://t.co/8qFO9yKLlp</a></p>&mdash; Mark D. Scherz (@MarkScherz) <a href="https://twitter.com/MarkScherz/status/839831849736232962?ref_src=twsrc%5Etfw">March 9, 2017</a></blockquote>
363
-<script async src="//platform.twitter.com/widgets.js" charset="utf-8"></script><blockquote class="twitter-tweet"><p lang="en" dir="ltr">Plot beautiful phylogenies and illustrate them with <a href="https://twitter.com/PhyloPic?ref_src=twsrc%5Etfw">@PhyloPic</a> images, with ggtree <a href="https://t.co/i9lsp5W6mL">https://t.co/i9lsp5W6mL</a> <a href="https://t.co/mA8hygAgSG">pic.twitter.com/mA8hygAgSG</a></p>&mdash; Molecular Ecologist (@molecologist) <a href="https://twitter.com/molecologist/status/830023569887391744?ref_src=twsrc%5Etfw">February 10, 2017</a></blockquote>
364
-<script async src="//platform.twitter.com/widgets.js" charset="utf-8"></script><blockquote class="twitter-tweet"><p lang="en" dir="ltr">OMG SO USEFUL! &quot;Phylogenetic trees in R using ggtree&quot; <a href="https://t.co/Yr8HNdWXV0">https://t.co/Yr8HNdWXV0</a></p>&mdash; Stephen Taerum (@BrahStevovo) <a href="https://twitter.com/BrahStevovo/status/829398997735313408?ref_src=twsrc%5Etfw">February 8, 2017</a></blockquote>
365
-<script async src="//platform.twitter.com/widgets.js" charset="utf-8"></script><blockquote class="twitter-tweet"><p lang="en" dir="ltr">I like ggtree to plot phylogenetic trees and annotate them. And I haven&#39;t found any other tools as customizable as ggtree</p>&mdash; Le NΓ©matode (@LeNematode) <a href="https://twitter.com/LeNematode/status/824264788456984576?ref_src=twsrc%5Etfw">January 25, 2017</a></blockquote>
366
-<script async src="//platform.twitter.com/widgets.js" charset="utf-8"></script><blockquote class="twitter-tweet"><p lang="en" dir="ltr">The R <a href="https://twitter.com/Bioconductor?ref_src=twsrc%5Etfw">@Bioconductor</a> package <a href="https://twitter.com/hashtag/ggtree?src=hash&amp;ref_src=twsrc%5Etfw">#ggtree</a> is now published in <a href="https://twitter.com/MethodsEcolEvol?ref_src=twsrc%5Etfw">@MethodsEcolEvol</a> <a href="https://t.co/6fvSRQo2CC">https://t.co/6fvSRQo2CC</a> <a href="https://twitter.com/hashtag/evomics2017?src=hash&amp;ref_src=twsrc%5Etfw">#evomics2017</a> <a href="https://t.co/Dwq1DD84A2">pic.twitter.com/Dwq1DD84A2</a></p>&mdash; Elin Videvall (@ElinVidevall) <a href="https://twitter.com/ElinVidevall/status/822383911258890242?ref_src=twsrc%5Etfw">January 20, 2017</a></blockquote>
367
-<script async src="//platform.twitter.com/widgets.js" charset="utf-8"></script><blockquote class="twitter-tweet"><p lang="en" dir="ltr">Assortative tip coloring by text string using <a href="https://twitter.com/hashtag/ggtree?src=hash&amp;ref_src=twsrc%5Etfw">#ggtree</a> by <a href="https://twitter.com/guangchuangyu?ref_src=twsrc%5Etfw">@guangchuangyu</a> <a href="https://t.co/rocvFK3OOS">https://t.co/rocvFK3OOS</a> <a href="https://twitter.com/hashtag/phylogenetics?src=hash&amp;ref_src=twsrc%5Etfw">#phylogenetics</a> <a href="https://t.co/mEMkhZ2fVk">pic.twitter.com/mEMkhZ2fVk</a></p>&mdash; Guanyang Zhang (@GYZhang2) <a href="https://twitter.com/GYZhang2/status/811666431452450816?ref_src=twsrc%5Etfw">December 21, 2016</a></blockquote>
368
-<script async src="//platform.twitter.com/widgets.js" charset="utf-8"></script><blockquote class="twitter-tweet"><p lang="en" dir="ltr">Featured this week: ggtree, an R package for visualization &amp; annotation of phylogenetic trees. Like it? Vote it up! <a href="https://t.co/laxtuRQDGB">https://t.co/laxtuRQDGB</a> <a href="https://t.co/zDvEBysWSQ">pic.twitter.com/zDvEBysWSQ</a></p>&mdash; LabWorm (@TheLabWorm) <a href="https://twitter.com/TheLabWorm/status/811661275889549312?ref_src=twsrc%5Etfw">December 21, 2016</a></blockquote>
369
-<script async src="//platform.twitter.com/widgets.js" charset="utf-8"></script><blockquote class="twitter-tweet"><p lang="en" dir="ltr">+1 for ggtree, can make some very pretty figures.</p>&mdash; Will Allen (@wl_allen) <a href="https://twitter.com/wl_allen/status/797041236867686400?ref_src=twsrc%5Etfw">November 11, 2016</a></blockquote>
370
-<script async src="//platform.twitter.com/widgets.js" charset="utf-8"></script><blockquote class="twitter-tweet"><p lang="en" dir="ltr">I&#39;m worried by how excited I am about having a whole 8 hour flight to work on some <a href="https://twitter.com/hashtag/rstats?src=hash&amp;ref_src=twsrc%5Etfw">#rstats</a>. Going to teach myself ggtree first...</p>&mdash; Natalie Cooper (@nhcooper123) <a href="https://twitter.com/nhcooper123/status/797037016403820546?ref_src=twsrc%5Etfw">November 11, 2016</a></blockquote>
371
-<script async src="//platform.twitter.com/widgets.js" charset="utf-8"></script><blockquote class="twitter-tweet"><p lang="en" dir="ltr">I use ggtree in R, which uses ggplot2 language. Easy to edit and produces nice figures</p>&mdash; James Doonan (@clydeandforth1) <a href="https://twitter.com/clydeandforth1/status/794278716859879424?ref_src=twsrc%5Etfw">November 3, 2016</a></blockquote>
372
-<script async src="//platform.twitter.com/widgets.js" charset="utf-8"></script><blockquote class="twitter-tweet"><p lang="en" dir="ltr">Adaptive radiation of <a href="https://twitter.com/hashtag/Darwin?src=hash&amp;ref_src=twsrc%5Etfw">#Darwin</a>&#39;s finches showing <a href="https://twitter.com/hashtag/genotypic?src=hash&amp;ref_src=twsrc%5Etfw">#genotypic</a> and <a href="https://twitter.com/hashtag/morphometric?src=hash&amp;ref_src=twsrc%5Etfw">#morphometric</a> evolution. Good excuse to practice with <a href="https://twitter.com/hashtag/ggtree?src=hash&amp;ref_src=twsrc%5Etfw">#ggtree</a> <a href="https://twitter.com/guangchuangyu?ref_src=twsrc%5Etfw">@guangchuangyu</a> <a href="https://t.co/JJZ3Yje58s">pic.twitter.com/JJZ3Yje58s</a></p>&mdash; Will Harvey (@_wharvey) <a href="https://twitter.com/_wharvey/status/831952966701678592?ref_src=twsrc%5Etfw">February 15, 2017</a></blockquote>
373
-<script async src="//platform.twitter.com/widgets.js" charset="utf-8"></script><blockquote class="twitter-tweet"><p lang="en" dir="ltr">am quite liking <a href="https://twitter.com/hashtag/ggtree?src=hash&amp;ref_src=twsrc%5Etfw">#ggtree</a> <a href="https://twitter.com/hashtag/rstats?src=hash&amp;ref_src=twsrc%5Etfw">#rstats</a> <a href="https://twitter.com/hashtag/ggplot?src=hash&amp;ref_src=twsrc%5Etfw">#ggplot</a> <a href="https://t.co/hvywS2z4ps">pic.twitter.com/hvywS2z4ps</a></p>&mdash; Nicholas E Ilott (@IlottNick) <a href="https://twitter.com/IlottNick/status/788751417746059264?ref_src=twsrc%5Etfw">October 19, 2016</a></blockquote>
374
-<script async src="//platform.twitter.com/widgets.js" charset="utf-8"></script><blockquote class="twitter-tweet"><p lang="en" dir="ltr">Treespace visualization of a heuristic best tree search in <a href="https://twitter.com/hashtag/R?src=hash&amp;ref_src=twsrc%5Etfw">#R</a> package <a href="https://twitter.com/hashtag/ggtree?src=hash&amp;ref_src=twsrc%5Etfw">#ggtree</a> <a href="https://twitter.com/hashtag/phylogenetics?src=hash&amp;ref_src=twsrc%5Etfw">#phylogenetics</a> <a href="https://t.co/hnSJpIABql">pic.twitter.com/hnSJpIABql</a></p>&mdash; Alex DamiΓ‘nSerrano β‘‚ (@antropoteuthis) <a href="https://twitter.com/antropoteuthis/status/693123105707986944?ref_src=twsrc%5Etfw">January 29, 2016</a></blockquote>
375
-<script async src="//platform.twitter.com/widgets.js" charset="utf-8"></script><blockquote class="twitter-tweet"><p lang="en" dir="ltr"><a href="https://twitter.com/guangchuangyu?ref_src=twsrc%5Etfw">@guangchuangyu</a> Updated to latest <a href="https://twitter.com/hashtag/ggtree?src=hash&amp;ref_src=twsrc%5Etfw">#ggtree</a> and <a href="https://twitter.com/hashtag/ggplot2?src=hash&amp;ref_src=twsrc%5Etfw">#ggplot2</a> and very impressed! Any ideas on using geom_label with tip labels to add box/fill?</p>&mdash; Jo Williams-Newkirk (@ajwnewkirk) <a href="https://twitter.com/ajwnewkirk/status/691762302492790788?ref_src=twsrc%5Etfw">January 25, 2016</a></blockquote>
376
-<script async src="//platform.twitter.com/widgets.js" charset="utf-8"></script><blockquote class="twitter-tweet"><p lang="en" dir="ltr">ggtree looks really good! <a href="https://twitter.com/hashtag/rstats?src=hash&amp;ref_src=twsrc%5Etfw">#rstats</a><a href="https://t.co/7rtexYV3I5">https://t.co/7rtexYV3I5</a></p>&mdash; Paul Staab (@paulstaab) <a href="https://twitter.com/paulstaab/status/687933344219312128?ref_src=twsrc%5Etfw">January 15, 2016</a></blockquote>
377
-<script async src="//platform.twitter.com/widgets.js" charset="utf-8"></script><blockquote class="twitter-tweet"><p lang="en" dir="ltr">If you’re not using ggtree by <a href="https://twitter.com/guangchuangyu?ref_src=twsrc%5Etfw">@guangchuangyu</a> for your trees in R then you should be! <a href="https://twitter.com/hashtag/rstats?src=hash&amp;ref_src=twsrc%5Etfw">#rstats</a> <a href="https://twitter.com/hashtag/bioinformatics?src=hash&amp;ref_src=twsrc%5Etfw">#bioinformatics</a><a href="https://t.co/Z8HdLeyiIg">https://t.co/Z8HdLeyiIg</a></p>&mdash; Matt Workentine (@mworkentine) <a href="https://twitter.com/mworkentine/status/684411780412526592?ref_src=twsrc%5Etfw">January 5, 2016</a></blockquote>
378
-<script async src="//platform.twitter.com/widgets.js" charset="utf-8"></script><blockquote class="twitter-tweet"><p lang="en" dir="ltr"><a href="https://twitter.com/guangchuangyu?ref_src=twsrc%5Etfw">@guangchuangyu</a> <a href="https://twitter.com/hashtag/ggtree?src=hash&amp;ref_src=twsrc%5Etfw">#ggtree</a> has actually changed my life! it is <a href="https://twitter.com/hashtag/awesome?src=hash&amp;ref_src=twsrc%5Etfw">#awesome</a>! <a href="https://twitter.com/hashtag/RePlottingEveryTreeFigureEver?src=hash&amp;ref_src=twsrc%5Etfw">#RePlottingEveryTreeFigureEver</a> <a href="https://twitter.com/hashtag/ggplot2?src=hash&amp;ref_src=twsrc%5Etfw">#ggplot2</a></p>&mdash; Peter Cowman (@pete_cowman) <a href="https://twitter.com/pete_cowman/status/665188011047563268?ref_src=twsrc%5Etfw">November 13, 2015</a></blockquote>
379
-<script async src="//platform.twitter.com/widgets.js" charset="utf-8"></script><blockquote class="twitter-tweet"><p lang="en" dir="ltr">I continue to be amazed by the speed and quality of support <a href="https://twitter.com/guangchuangyu?ref_src=twsrc%5Etfw">@guangchuangyu</a> provides for <a href="https://twitter.com/hashtag/ggtree?src=hash&amp;ref_src=twsrc%5Etfw">#ggtree</a> <a href="https://twitter.com/hashtag/rstats?src=hash&amp;ref_src=twsrc%5Etfw">#rstats</a></p>&mdash; Jo Williams-Newkirk (@ajwnewkirk) <a href="https://twitter.com/ajwnewkirk/status/664040586001915904?ref_src=twsrc%5Etfw">November 10, 2015</a></blockquote>
380
-<script async src="//platform.twitter.com/widgets.js" charset="utf-8"></script><blockquote class="twitter-tweet"><p lang="en" dir="ltr"><a href="https://twitter.com/tylerrinker?ref_src=twsrc%5Etfw">@tylerrinker</a> really appreciate all of <a href="https://twitter.com/guangchuangyu?ref_src=twsrc%5Etfw">@guangchuangyu</a> efforts with <a href="https://twitter.com/hashtag/ggtree?src=hash&amp;ref_src=twsrc%5Etfw">#ggtree</a>; extends well beyond its original intent; love it</p>&mdash; timelyportfolio (@timelyportfolio) <a href="https://twitter.com/timelyportfolio/status/639507420054749184?ref_src=twsrc%5Etfw">September 3, 2015</a></blockquote>
381
-<script async src="//platform.twitter.com/widgets.js" charset="utf-8"></script><blockquote class="twitter-tweet"><p lang="en" dir="ltr"><a href="https://twitter.com/guangchuangyu?ref_src=twsrc%5Etfw">@guangchuangyu</a> I even used <a href="https://twitter.com/hashtag/ggtree?src=hash&amp;ref_src=twsrc%5Etfw">#ggtree</a>!</p>&mdash; Simon Frost (@sdwfrost) <a href="https://twitter.com/sdwfrost/status/671673570259509248?ref_src=twsrc%5Etfw">December 1, 2015</a></blockquote>
382
-<script async src="//platform.twitter.com/widgets.js" charset="utf-8"></script><blockquote class="twitter-tweet"><p lang="en" dir="ltr"><a href="https://twitter.com/minisciencegirl?ref_src=twsrc%5Etfw">@minisciencegirl</a> Yep we use it mainly for that... there&#39;s a more featured version in <a href="https://t.co/5oOeLwx2Hg">https://t.co/5oOeLwx2Hg</a> but I need to switch to ggtree!</p>&mdash; Kat Holt (@DrKatHolt) <a href="https://twitter.com/DrKatHolt/status/667490462693912576?ref_src=twsrc%5Etfw">November 19, 2015</a></blockquote>
383
-<script async src="//platform.twitter.com/widgets.js" charset="utf-8"></script><blockquote class="twitter-tweet"><p lang="en" dir="ltr">Sent my first <a href="https://twitter.com/hashtag/rstats?src=hash&amp;ref_src=twsrc%5Etfw">#rstats</a> <a href="https://twitter.com/hashtag/shiny?src=hash&amp;ref_src=twsrc%5Etfw">#shiny</a> app off to be alpha tested by a colleague today. Wouldn&#39;t be possible without <a href="https://twitter.com/hashtag/ggtree?src=hash&amp;ref_src=twsrc%5Etfw">#ggtree</a>.</p>&mdash; Jo Williams-Newkirk (@ajwnewkirk) <a href="https://twitter.com/ajwnewkirk/status/660278158663401473?ref_src=twsrc%5Etfw">October 31, 2015</a></blockquote>
384
-<script async src="//platform.twitter.com/widgets.js" charset="utf-8"></script><blockquote class="twitter-tweet"><p lang="en" dir="ltr"><a href="https://twitter.com/genetics_blog?ref_src=twsrc%5Etfw">@genetics_blog</a> Thanks. We have turned this into a shiny app too, but need to iron out some bugs... Also, try the new ggtree library!</p>&mdash; Kat Holt (@DrKatHolt) <a href="https://twitter.com/DrKatHolt/status/641251456595685376?ref_src=twsrc%5Etfw">September 8, 2015</a></blockquote>
385
-<script async src="//platform.twitter.com/widgets.js" charset="utf-8"></script><blockquote class="twitter-tweet"><p lang="en" dir="ltr"><a href="https://twitter.com/guangchuangyu?ref_src=twsrc%5Etfw">@guangchuangyu</a> My bad :( It&#39;s working perfectly fine. Thanks so much for an awesome <a href="https://twitter.com/hashtag/rstats?src=hash&amp;ref_src=twsrc%5Etfw">#rstats</a> <a href="https://twitter.com/hashtag/ggplot2?src=hash&amp;ref_src=twsrc%5Etfw">#ggplot2</a> package ggtree! <a href="http://t.co/ofmzyOWe9C">pic.twitter.com/ofmzyOWe9C</a></p>&mdash; Ahmed Moustafa (@AhmedMoustafa) <a href="https://twitter.com/AhmedMoustafa/status/559734740488818688?ref_src=twsrc%5Etfw">January 26, 2015</a></blockquote>
386
-<script async src="//platform.twitter.com/widgets.js" charset="utf-8"></script><blockquote class="twitter-tweet"><p lang="en" dir="ltr"><a href="https://twitter.com/guangchuangyu?ref_src=twsrc%5Etfw">@guangchuangyu</a> A bit improved version :) <a href="http://t.co/TZTSBK5aSm">pic.twitter.com/TZTSBK5aSm</a></p>&mdash; Ahmed Moustafa (@AhmedMoustafa) <a href="https://twitter.com/AhmedMoustafa/status/559762891478667264?ref_src=twsrc%5Etfw">January 26, 2015</a></blockquote>
387
-<script async src="//platform.twitter.com/widgets.js" charset="utf-8"></script><blockquote class="twitter-tweet"><p lang="en" dir="ltr">I wish this guy was my student! <a href="https://twitter.com/guangchuangyu?ref_src=twsrc%5Etfw">@guangchuangyu</a> Sure, it won&#39;t get a Nature or Science paper, but who cares? <a href="http://t.co/XnA7uaFVms">http://t.co/XnA7uaFVms</a></p>&mdash; Simon Frost (@sdwfrost) <a href="https://twitter.com/sdwfrost/status/561514846291001344?ref_src=twsrc%5Etfw">January 31, 2015</a></blockquote>
388
-<script async src="//platform.twitter.com/widgets.js" charset="utf-8"></script><blockquote class="twitter-tweet"><p lang="en" dir="ltr"><a href="https://twitter.com/CieraReports?ref_src=twsrc%5Etfw">@CieraReports</a> ggtree is a cool package that is based on the drawing of ggplot2 <a href="https://t.co/gFPHSdGAj1">https://t.co/gFPHSdGAj1</a></p>&mdash; Uryu Shinya (@u_ribo) <a href="https://twitter.com/u_ribo/status/559542705663905793?ref_src=twsrc%5Etfw">January 26, 2015</a></blockquote>
389
-<script async src="//platform.twitter.com/widgets.js" charset="utf-8"></script><blockquote class="twitter-tweet"><p lang="en" dir="ltr"><a href="https://twitter.com/hashtag/ggtree?src=hash&amp;ref_src=twsrc%5Etfw">#ggtree</a> <a href="https://t.co/VFrKCcz0DI">https://t.co/VFrKCcz0DI</a> is a pretty powerful <a href="https://twitter.com/hashtag/rstats?src=hash&amp;ref_src=twsrc%5Etfw">#rstats</a> <a href="https://twitter.com/hashtag/ggplot2?src=hash&amp;ref_src=twsrc%5Etfw">#ggplot2</a> <a href="https://twitter.com/Bioconductor?ref_src=twsrc%5Etfw">@Bioconductor</a> pkg for neat <a href="https://twitter.com/hashtag/phylogenetic?src=hash&amp;ref_src=twsrc%5Etfw">#phylogenetic</a> <a href="https://twitter.com/hashtag/dataviz?src=hash&amp;ref_src=twsrc%5Etfw">#dataviz</a> by <a href="https://twitter.com/guangchuangyu?ref_src=twsrc%5Etfw">@guangchuangyu</a></p>&mdash; Ahmed Moustafa (@AhmedMoustafa) <a href="https://twitter.com/AhmedMoustafa/status/561056244782227456?ref_src=twsrc%5Etfw">January 30, 2015</a></blockquote>
390
-<script async src="//platform.twitter.com/widgets.js" charset="utf-8"></script><blockquote class="twitter-tweet"><p lang="en" dir="ltr">ggtree extends ggplot2 for phylogenetic trees. tons of documentation+examples: <a href="https://t.co/y9V52s2yWd">https://t.co/y9V52s2yWd</a> <a href="https://twitter.com/hashtag/Rstats?src=hash&amp;ref_src=twsrc%5Etfw">#Rstats</a> <a href="https://t.co/Z9SDcueR2c">pic.twitter.com/Z9SDcueR2c</a></p>&mdash; Stephen Turner (@genetics_blog) <a href="https://twitter.com/genetics_blog/status/664085841766195200?ref_src=twsrc%5Etfw">November 10, 2015</a></blockquote>
391
-<script async src="//platform.twitter.com/widgets.js" charset="utf-8"></script><blockquote class="twitter-tweet"><p lang="en" dir="ltr">Need to visualize some trees? Recent  <a href="https://twitter.com/hashtag/R?src=hash&amp;ref_src=twsrc%5Etfw">#R</a> package <a href="https://twitter.com/hashtag/ggtree?src=hash&amp;ref_src=twsrc%5Etfw">#ggtree</a> looks quite interesting. <a href="https://t.co/EPaXIqmvDZ">https://t.co/EPaXIqmvDZ</a></p>&mdash; Sebastian Schmidt (@TSBSchm) <a href="https://twitter.com/TSBSchm/status/664431087683260416?ref_src=twsrc%5Etfw">November 11, 2015</a></blockquote>
392
-<script async src="//platform.twitter.com/widgets.js" charset="utf-8"></script><blockquote class="twitter-tweet"><p lang="en" dir="ltr"><a href="https://twitter.com/flashton2003?ref_src=twsrc%5Etfw">@flashton2003</a> world of possibilities now! Also looking at ggtree (ggplot2 expansion) for future stuff - that looks really cool too</p>&mdash; David W. Cleary (@Bacterioskeptic) <a href="https://twitter.com/Bacterioskeptic/status/667706456045694976?ref_src=twsrc%5Etfw">November 20, 2015</a></blockquote>
393
-<script async src="//platform.twitter.com/widgets.js" charset="utf-8"></script><blockquote class="twitter-tweet"><p lang="en" dir="ltr">time for you to learn <a href="https://twitter.com/hashtag/rstats?src=hash&amp;ref_src=twsrc%5Etfw">#rstats</a> <a href="https://twitter.com/LAevolving?ref_src=twsrc%5Etfw">@LAevolving</a> &lt;- <a href="https://twitter.com/stephspiel?ref_src=twsrc%5Etfw">@StephSpiel</a> new <a href="https://twitter.com/hashtag/Rstats?src=hash&amp;ref_src=twsrc%5Etfw">#Rstats</a> package ggtree <a href="https://twitter.com/ggplot2?ref_src=twsrc%5Etfw">@ggplot2</a> <a href="https://t.co/DFmKGyTVwE">https://t.co/DFmKGyTVwE</a> <a href="https://t.co/WRBZHlRsIa">pic.twitter.com/WRBZHlRsIa</a></p>&mdash; Salamanda (@ajzellmer) <a href="https://twitter.com/ajzellmer/status/663937183791759360?ref_src=twsrc%5Etfw">November 10, 2015</a></blockquote>
394
-<script async src="//platform.twitter.com/widgets.js" charset="utf-8"></script><blockquote class="twitter-tweet"><p lang="en" dir="ltr">V. cool new <a href="https://twitter.com/hashtag/Rstats?src=hash&amp;ref_src=twsrc%5Etfw">#Rstats</a> package ggtree, addon 2 <a href="https://twitter.com/ggplot2?ref_src=twsrc%5Etfw">@ggplot2</a>, for automating tree drawing/annotating <a href="https://t.co/k3eSdVKp9C">https://t.co/k3eSdVKp9C</a> <a href="https://t.co/nH8SKSaXaN">pic.twitter.com/nH8SKSaXaN</a></p>&mdash; Stephanie Spielman (@stephspiel) <a href="https://twitter.com/stephspiel/status/663771499589861376?ref_src=twsrc%5Etfw">November 9, 2015</a></blockquote>
395
-<script async src="//platform.twitter.com/widgets.js" charset="utf-8"></script><blockquote class="twitter-tweet"><p lang="en" dir="ltr">Can’t wait to try. MT <a href="https://twitter.com/genetics_blog?ref_src=twsrc%5Etfw">@genetics_blog</a>: ggtree extends ggplot2 for phylogenetic trees: <a href="https://t.co/JuThXlHUjz">https://t.co/JuThXlHUjz</a> <a href="https://twitter.com/hashtag/Rstats?src=hash&amp;ref_src=twsrc%5Etfw">#Rstats</a> <a href="https://t.co/OmAzGghvqB">pic.twitter.com/OmAzGghvqB</a></p>&mdash; Kent Holsinger (@keholsinger) <a href="https://twitter.com/keholsinger/status/667433534756397057?ref_src=twsrc%5Etfw">November 19, 2015</a></blockquote>
396
-<script async src="//platform.twitter.com/widgets.js" charset="utf-8"></script><blockquote class="twitter-tweet"><p lang="en" dir="ltr"><a href="https://twitter.com/guangchuangyu?ref_src=twsrc%5Etfw">@guangchuangyu</a> Excited to discover <a href="https://twitter.com/hashtag/ggtree?src=hash&amp;ref_src=twsrc%5Etfw">#ggtree</a>; fills a lot of holes in my workflow but not seeing how to add bootstrap from ape?</p>&mdash; Jo Williams-Newkirk (@ajwnewkirk) <a href="https://twitter.com/ajwnewkirk/status/640573716733169664?ref_src=twsrc%5Etfw">September 6, 2015</a></blockquote>
397
-<script async src="//platform.twitter.com/widgets.js" charset="utf-8"></script><blockquote class="twitter-tweet"><p lang="en" dir="ltr">ggtree added cool features, My favorite is the one from BEAST output <a href="https://t.co/3WOLxfTzRp">https://t.co/3WOLxfTzRp</a></p>&mdash; Manvendra Singh (@manvendr7) <a href="https://twitter.com/manvendr7/status/664407764001779712?ref_src=twsrc%5Etfw">November 11, 2015</a></blockquote>
398
-<script async src="//platform.twitter.com/widgets.js" charset="utf-8"></script><blockquote class="twitter-tweet"><p lang="en" dir="ltr">ggtree looks useful: nice viz and annotations of phylogenetic trees with ggplot  <a href="https://twitter.com/hashtag/rstats?src=hash&amp;ref_src=twsrc%5Etfw">#rstats</a> <a href="http://t.co/lbNKw3qIDI">http://t.co/lbNKw3qIDI</a>  thanks <a href="https://twitter.com/guangchuangyu?ref_src=twsrc%5Etfw">@guangchuangyu</a></p>&mdash; Julia Gustavsen (@JuliaGustavsen) <a href="https://twitter.com/JuliaGustavsen/status/630500659960254464?ref_src=twsrc%5Etfw">August 9, 2015</a></blockquote>
399
-<script async src="//platform.twitter.com/widgets.js" charset="utf-8"></script><blockquote class="twitter-tweet"><p lang="en" dir="ltr">ggtree - looks like a very useful phylogenetic tree plotting package for R based on ggplot2 (<a href="https://t.co/UCXVVmG5W7">https://t.co/UCXVVmG5W7</a>)</p>&mdash; Simon J Greenhill (@SimonJGreenhill) <a href="https://twitter.com/SimonJGreenhill/status/547497335412899840?ref_src=twsrc%5Etfw">December 23, 2014</a></blockquote>
400
-<script async src="//platform.twitter.com/widgets.js" charset="utf-8"></script><blockquote class="twitter-tweet"><p lang="en" dir="ltr">Plot trees &amp; annotation (incl BEAST, time axis) with ggtree for R!<a href="http://t.co/9ahqKQLTaI">http://t.co/9ahqKQLTaI</a><br>Well spotted <a href="https://twitter.com/mackas21?ref_src=twsrc%5Etfw">@mackas21</a> <a href="http://t.co/2ldvAiH2fj">pic.twitter.com/2ldvAiH2fj</a></p>&mdash; Kat Holt (@DrKatHolt) <a href="https://twitter.com/DrKatHolt/status/610364467939913728?ref_src=twsrc%5Etfw">June 15, 2015</a></blockquote>
401
-<script async src="//platform.twitter.com/widgets.js" charset="utf-8"></script></p>
347
+<p><blockquote class="twitter-tweet"><p lang="en" dir="ltr">Thank you so much <a href="https://twitter.com/guangchuangyu?ref_src=twsrc%5Etfw">@guangchuangyu</a>! <a href="https://twitter.com/hashtag/ggtree?src=hash&amp;ref_src=twsrc%5Etfw">#ggtree</a> is the easy way for my phd data analysis &lt;3 love it!</p>&mdash; Francisco Romero (@pinchehippie) <a href="https://twitter.com/pinchehippie/status/920370392451178496?ref_src=twsrc%5Etfw">October 17, 2017</a></blockquote>
348
+<script async src="https://platform.twitter.com/widgets.js" charset="utf-8"></script>
349
+<blockquote class="twitter-tweet"><p lang="en" dir="ltr">Now on <a href="https://t.co/50tYJLLZqc">https://t.co/50tYJLLZqc</a> - a spotlight on the Top Tools for R Programming:<br>ggtree made the list!<a href="https://t.co/YQv7FeegpM">https://t.co/YQv7FeegpM</a> <a href="https://t.co/hGn7nBfbEJ">pic.twitter.com/hGn7nBfbEJ</a></p>&mdash; LabWorm (@TheLabWorm) <a href="https://twitter.com/TheLabWorm/status/912971120198012929?ref_src=twsrc%5Etfw">September 27, 2017</a></blockquote>
350
+<script async src="https://platform.twitter.com/widgets.js" charset="utf-8"></script>
351
+<blockquote class="twitter-tweet"><p lang="en" dir="ltr">geom_hilight_encircle for unrooted layout <a href="https://twitter.com/hashtag/ggtree?src=hash&amp;ref_src=twsrc%5Etfw">#ggtree</a> <a href="https://twitter.com/hashtag/rstats?src=hash&amp;ref_src=twsrc%5Etfw">#rstats</a> <a href="https://t.co/1wIwgwUduf">pic.twitter.com/1wIwgwUduf</a></p>&mdash; Guangchuang Yu (@guangchuangyu) <a href="https://twitter.com/guangchuangyu/status/907543915686793217?ref_src=twsrc%5Etfw">September 12, 2017</a></blockquote>
352
+<script async src="https://platform.twitter.com/widgets.js" charset="utf-8"></script>
353
+<blockquote class="twitter-tweet"><p lang="en" dir="ltr">New Post: Plotting a Sequential Binary Partition on a Tree in R <a href="https://twitter.com/alex_washburne?ref_src=twsrc%5Etfw">@alex_washburne</a> <a href="https://twitter.com/guangchuangyu?ref_src=twsrc%5Etfw">@guangchuangyu</a> <a href="https://t.co/6jQKMof5aW">https://t.co/6jQKMof5aW</a></p>&mdash; Justin Silverman (@inschool4life) <a href="https://twitter.com/inschool4life/status/910671384069722112?ref_src=twsrc%5Etfw">September 21, 2017</a></blockquote>
354
+<script async src="https://platform.twitter.com/widgets.js" charset="utf-8"></script>
355
+<blockquote class="twitter-tweet"><p lang="sv" dir="ltr">blog: Introduction to ggplot2 and to ggtree πŸ“πŸ“ˆπŸ‘¨β€πŸ”¬πŸ‘©β€πŸ”¬ <a href="https://twitter.com/hashtag/rstats?src=hash&amp;ref_src=twsrc%5Etfw">#rstats</a> <a href="https://twitter.com/hashtag/phdchat?src=hash&amp;ref_src=twsrc%5Etfw">#phdchat</a> <a href="https://t.co/ndmRitxpeH">https://t.co/ndmRitxpeH</a></p>&mdash; Jean (@JeanManguy) <a href="https://twitter.com/JeanManguy/status/903786057182957568?ref_src=twsrc%5Etfw">September 2, 2017</a></blockquote>
356
+<script async src="https://platform.twitter.com/widgets.js" charset="utf-8"></script>
357
+<blockquote class="twitter-tweet"><p lang="en" dir="ltr">The ggtree package looks like a cool way to visualize hierarchical data<a href="https://t.co/spsqLkqeVG">https://t.co/spsqLkqeVG</a> <a href="https://t.co/GRODlrBahW">pic.twitter.com/GRODlrBahW</a></p>&mdash; Nathan Brouwer (@lobrowR) <a href="https://twitter.com/lobrowR/status/899635001247059969?ref_src=twsrc%5Etfw">August 21, 2017</a></blockquote>
358
+<script async src="https://platform.twitter.com/widgets.js" charset="utf-8"></script>
359
+<blockquote class="twitter-tweet"><p lang="en" dir="ltr">New ggtree-based visualization in R package phylofactor! Below are the top three factors (= 4 bins) of mammalian body mass. <a href="https://t.co/ruT4OZF7gW">pic.twitter.com/ruT4OZF7gW</a></p>&mdash; Alex Washburne (@alex_washburne) <a href="https://twitter.com/alex_washburne/status/898729425168080897?ref_src=twsrc%5Etfw">August 19, 2017</a></blockquote>
360
+<script async src="https://platform.twitter.com/widgets.js" charset="utf-8"></script>
361
+<blockquote class="twitter-tweet"><p lang="en" dir="ltr">Possible to combine <a href="https://twitter.com/hashtag/ggjoy?src=hash&amp;ref_src=twsrc%5Etfw">#ggjoy</a> with <a href="https://twitter.com/hashtag/ggtree?src=hash&amp;ref_src=twsrc%5Etfw">#ggtree</a> ? My gg-fu is weak. <a href="https://twitter.com/hashtag/rstats?src=hash&amp;ref_src=twsrc%5Etfw">#rstats</a> <a href="https://twitter.com/hashtag/DataViz?src=hash&amp;ref_src=twsrc%5Etfw">#DataViz</a> <a href="https://twitter.com/hashtag/JoyPlot?src=hash&amp;ref_src=twsrc%5Etfw">#JoyPlot</a> <a href="https://t.co/4FICfER6Oa">https://t.co/4FICfER6Oa</a></p>&mdash; Libby Megna (@LibbyMegna) <a href="https://twitter.com/LibbyMegna/status/891144389715783680?ref_src=twsrc%5Etfw">July 29, 2017</a></blockquote>
362
+<script async src="https://platform.twitter.com/widgets.js" charset="utf-8"></script>
363
+<blockquote class="twitter-tweet"><p lang="en" dir="ltr">Second post with an update on how to add tip shapes and colours to ggtree <a href="https://t.co/ezWF4TVQst">https://t.co/ezWF4TVQst</a></p>&mdash; Anthony Underwood (@bioinformAnt) <a href="https://twitter.com/bioinformAnt/status/883301626022375424?ref_src=twsrc%5Etfw">July 7, 2017</a></blockquote>
364
+<script async src="https://platform.twitter.com/widgets.js" charset="utf-8"></script>
365
+<blockquote class="twitter-tweet"><p lang="en" dir="ltr">Yes and no. No manual assignment =&gt; randomly assigned colours. Even with manual spec ggtree is still much quicker than making fig by hand πŸ˜€</p>&mdash; Anthony Underwood (@bioinformAnt) <a href="https://twitter.com/bioinformAnt/status/883246854695256064?ref_src=twsrc%5Etfw">July 7, 2017</a></blockquote>
366
+<script async src="https://platform.twitter.com/widgets.js" charset="utf-8"></script>
367
+<blockquote class="twitter-tweet"><p lang="en" dir="ltr">I&#39;d use ggtree from Bioconductor as you can really tailor all the fonts etc..<a href="https://t.co/NAcbFswGYB">https://t.co/NAcbFswGYB</a></p>&mdash; Susan Holmes (@SherlockpHolmes) <a href="https://twitter.com/SherlockpHolmes/status/877576023109390336?ref_src=twsrc%5Etfw">June 21, 2017</a></blockquote>
368
+<script async src="https://platform.twitter.com/widgets.js" charset="utf-8"></script>
369
+<blockquote class="twitter-tweet"><p lang="en" dir="ltr">How phylogenies and associated heatmaps can be drawn using the <a href="https://twitter.com/hashtag/ggtree?src=hash&amp;ref_src=twsrc%5Etfw">#ggtree</a> package in <a href="https://twitter.com/hashtag/R?src=hash&amp;ref_src=twsrc%5Etfw">#R</a> <a href="https://t.co/rlBvGxUEBO">https://t.co/rlBvGxUEBO</a></p>&mdash; L. Rosaleny (@lorelai66) <a href="https://twitter.com/lorelai66/status/875594411584782337?ref_src=twsrc%5Etfw">June 16, 2017</a></blockquote>
370
+<script async src="https://platform.twitter.com/widgets.js" charset="utf-8"></script>
371
+<blockquote class="twitter-tweet"><p lang="en" dir="ltr">I think most use a combination of icandy/itol/phandango. I prefer ggtree, which you can code and customise in R.</p>&mdash; Mat Beale (@typeMAT12) <a href="https://twitter.com/typeMAT12/status/871775262152810496?ref_src=twsrc%5Etfw">June 5, 2017</a></blockquote>
372
+<script async src="https://platform.twitter.com/widgets.js" charset="utf-8"></script>
373
+<blockquote class="twitter-tweet"><p lang="en" dir="ltr">You like emijo &amp; <a href="https://twitter.com/hashtag/RStats?src=hash&amp;ref_src=twsrc%5Etfw">#RStats</a> ? Then check this out! phylomoji with ggtree and emojifont : <a href="https://t.co/9BcZhjfkXm">https://t.co/9BcZhjfkXm</a> <a href="https://t.co/pP1aMPRozS">pic.twitter.com/pP1aMPRozS</a></p>&mdash; thinkR (@thinkR_fr) <a href="https://twitter.com/thinkR_fr/status/867408666852511744?ref_src=twsrc%5Etfw">May 24, 2017</a></blockquote>
374
+<script async src="https://platform.twitter.com/widgets.js" charset="utf-8"></script>
375
+<blockquote class="twitter-tweet"><p lang="en" dir="ltr">as someone who doesn&#39;t build a lot of trees, but does a lot of <a href="https://twitter.com/hashtag/Rstats?src=hash&amp;ref_src=twsrc%5Etfw">#Rstats</a> β€”<a href="https://twitter.com/hashtag/ggtree?src=hash&amp;ref_src=twsrc%5Etfw">#ggtree</a> is SO GREAT <a href="https://t.co/ABe3TsIVPR">https://t.co/ABe3TsIVPR</a></p>&mdash; Sean Leonard (@spleonard1) <a href="https://twitter.com/spleonard1/status/857665638600507393?ref_src=twsrc%5Etfw">April 27, 2017</a></blockquote>
376
+<script async src="https://platform.twitter.com/widgets.js" charset="utf-8"></script>
377
+<blockquote class="twitter-tweet"><p lang="en" dir="ltr"><a href="https://twitter.com/guangchuangyu?ref_src=twsrc%5Etfw">@guangchuangyu</a> by the way our new paper used ggtree! Thanks for your hard work! <a href="https://t.co/mXD6E0Ddt0">https://t.co/mXD6E0Ddt0</a></p>&mdash; Justin Silverman (@inschool4life) <a href="https://twitter.com/inschool4life/status/840181267542994944?ref_src=twsrc%5Etfw">March 10, 2017</a></blockquote>
378
+<script async src="https://platform.twitter.com/widgets.js" charset="utf-8"></script>
379
+<blockquote class="twitter-tweet"><p lang="en" dir="ltr">I cannot get over how beautiful the graphics produced by GGTREE are. Cannot wait to use it! <a href="https://t.co/8qFO9yKLlp">https://t.co/8qFO9yKLlp</a></p>&mdash; Mark D. Scherz (@MarkScherz) <a href="https://twitter.com/MarkScherz/status/839831849736232962?ref_src=twsrc%5Etfw">March 9, 2017</a></blockquote>
380
+<script async src="https://platform.twitter.com/widgets.js" charset="utf-8"></script>
381
+<blockquote class="twitter-tweet"><p lang="en" dir="ltr">Plot beautiful phylogenies and illustrate them with <a href="https://twitter.com/PhyloPic?ref_src=twsrc%5Etfw">@PhyloPic</a> images, with ggtree <a href="https://t.co/i9lsp5W6mL">https://t.co/i9lsp5W6mL</a> <a href="https://t.co/mA8hygAgSG">pic.twitter.com/mA8hygAgSG</a></p>&mdash; Molecular Ecologist (@molecologist) <a href="https://twitter.com/molecologist/status/830023569887391744?ref_src=twsrc%5Etfw">February 10, 2017</a></blockquote>
382
+<script async src="https://platform.twitter.com/widgets.js" charset="utf-8"></script>
383
+<blockquote class="twitter-tweet"><p lang="en" dir="ltr">OMG SO USEFUL! &quot;Phylogenetic trees in R using ggtree&quot; <a href="https://t.co/Yr8HNdWXV0">https://t.co/Yr8HNdWXV0</a></p>&mdash; Stephen Taerum (@BrahStevovo) <a href="https://twitter.com/BrahStevovo/status/829398997735313408?ref_src=twsrc%5Etfw">February 8, 2017</a></blockquote>
384
+<script async src="https://platform.twitter.com/widgets.js" charset="utf-8"></script>
385
+<blockquote class="twitter-tweet"><p lang="en" dir="ltr">I like ggtree to plot phylogenetic trees and annotate them. And I haven&#39;t found any other tools as customizable as ggtree</p>&mdash; Le NΓ©matode (@LeNematode) <a href="https://twitter.com/LeNematode/status/824264788456984576?ref_src=twsrc%5Etfw">January 25, 2017</a></blockquote>
386
+<script async src="https://platform.twitter.com/widgets.js" charset="utf-8"></script>
387
+<blockquote class="twitter-tweet"><p lang="en" dir="ltr">The R <a href="https://twitter.com/Bioconductor?ref_src=twsrc%5Etfw">@Bioconductor</a> package <a href="https://twitter.com/hashtag/ggtree?src=hash&amp;ref_src=twsrc%5Etfw">#ggtree</a> is now published in <a href="https://twitter.com/MethodsEcolEvol?ref_src=twsrc%5Etfw">@MethodsEcolEvol</a> <a href="https://t.co/6fvSRQo2CC">https://t.co/6fvSRQo2CC</a> <a href="https://twitter.com/hashtag/evomics2017?src=hash&amp;ref_src=twsrc%5Etfw">#evomics2017</a> <a href="https://t.co/Dwq1DD84A2">pic.twitter.com/Dwq1DD84A2</a></p>&mdash; Elin Videvall (@ElinVidevall) <a href="https://twitter.com/ElinVidevall/status/822383911258890242?ref_src=twsrc%5Etfw">January 20, 2017</a></blockquote>
388
+<script async src="https://platform.twitter.com/widgets.js" charset="utf-8"></script>
389
+<blockquote class="twitter-tweet"><p lang="en" dir="ltr">Assortative tip coloring by text string using <a href="https://twitter.com/hashtag/ggtree?src=hash&amp;ref_src=twsrc%5Etfw">#ggtree</a> by <a href="https://twitter.com/guangchuangyu?ref_src=twsrc%5Etfw">@guangchuangyu</a> <a href="https://t.co/rocvFK3OOS">https://t.co/rocvFK3OOS</a> <a href="https://twitter.com/hashtag/phylogenetics?src=hash&amp;ref_src=twsrc%5Etfw">#phylogenetics</a> <a href="https://t.co/mEMkhZ2fVk">pic.twitter.com/mEMkhZ2fVk</a></p>&mdash; Guanyang Zhang (@GYZhang2) <a href="https://twitter.com/GYZhang2/status/811666431452450816?ref_src=twsrc%5Etfw">December 21, 2016</a></blockquote>
390
+<script async src="https://platform.twitter.com/widgets.js" charset="utf-8"></script>
391
+<blockquote class="twitter-tweet"><p lang="en" dir="ltr">Featured this week: ggtree, an R package for visualization &amp; annotation of phylogenetic trees. Like it? Vote it up! <a href="https://t.co/laxtuRQDGB">https://t.co/laxtuRQDGB</a> <a href="https://t.co/zDvEBysWSQ">pic.twitter.com/zDvEBysWSQ</a></p>&mdash; LabWorm (@TheLabWorm) <a href="https://twitter.com/TheLabWorm/status/811661275889549312?ref_src=twsrc%5Etfw">December 21, 2016</a></blockquote>
392
+<script async src="https://platform.twitter.com/widgets.js" charset="utf-8"></script>
393
+<blockquote class="twitter-tweet"><p lang="en" dir="ltr">+1 for ggtree, can make some very pretty figures.</p>&mdash; Will Allen (@wl_allen) <a href="https://twitter.com/wl_allen/status/797041236867686400?ref_src=twsrc%5Etfw">November 11, 2016</a></blockquote>
394
+<script async src="https://platform.twitter.com/widgets.js" charset="utf-8"></script>
395
+<blockquote class="twitter-tweet"><p lang="en" dir="ltr">I&#39;m worried by how excited I am about having a whole 8 hour flight to work on some <a href="https://twitter.com/hashtag/rstats?src=hash&amp;ref_src=twsrc%5Etfw">#rstats</a>. Going to teach myself ggtree first...</p>&mdash; Natalie Cooper (@nhcooper123) <a href="https://twitter.com/nhcooper123/status/797037016403820546?ref_src=twsrc%5Etfw">November 11, 2016</a></blockquote>
396
+<script async src="https://platform.twitter.com/widgets.js" charset="utf-8"></script>
397
+<blockquote class="twitter-tweet"><p lang="en" dir="ltr">I use ggtree in R, which uses ggplot2 language. Easy to edit and produces nice figures</p>&mdash; James Doonan (@clydeandforth1) <a href="https://twitter.com/clydeandforth1/status/794278716859879424?ref_src=twsrc%5Etfw">November 3, 2016</a></blockquote>
398
+<script async src="https://platform.twitter.com/widgets.js" charset="utf-8"></script>
399
+<blockquote class="twitter-tweet"><p lang="en" dir="ltr">Adaptive radiation of <a href="https://twitter.com/hashtag/Darwin?src=hash&amp;ref_src=twsrc%5Etfw">#Darwin</a>&#39;s finches showing <a href="https://twitter.com/hashtag/genotypic?src=hash&amp;ref_src=twsrc%5Etfw">#genotypic</a> and <a href="https://twitter.com/hashtag/morphometric?src=hash&amp;ref_src=twsrc%5Etfw">#morphometric</a> evolution. Good excuse to practice with <a href="https://twitter.com/hashtag/ggtree?src=hash&amp;ref_src=twsrc%5Etfw">#ggtree</a> <a href="https://twitter.com/guangchuangyu?ref_src=twsrc%5Etfw">@guangchuangyu</a> <a href="https://t.co/JJZ3Yje58s">pic.twitter.com/JJZ3Yje58s</a></p>&mdash; Will Harvey (@_wharvey) <a href="https://twitter.com/_wharvey/status/831952966701678592?ref_src=twsrc%5Etfw">February 15, 2017</a></blockquote>
400
+<script async src="https://platform.twitter.com/widgets.js" charset="utf-8"></script>
401
+<blockquote class="twitter-tweet"><p lang="en" dir="ltr">am quite liking <a href="https://twitter.com/hashtag/ggtree?src=hash&amp;ref_src=twsrc%5Etfw">#ggtree</a> <a href="https://twitter.com/hashtag/rstats?src=hash&amp;ref_src=twsrc%5Etfw">#rstats</a> <a href="https://twitter.com/hashtag/ggplot?src=hash&amp;ref_src=twsrc%5Etfw">#ggplot</a> <a href="https://t.co/hvywS2z4ps">pic.twitter.com/hvywS2z4ps</a></p>&mdash; Nicholas E Ilott (@IlottNick) <a href="https://twitter.com/IlottNick/status/788751417746059264?ref_src=twsrc%5Etfw">October 19, 2016</a></blockquote>
402
+<script async src="https://platform.twitter.com/widgets.js" charset="utf-8"></script>
403
+<blockquote class="twitter-tweet"><p lang="en" dir="ltr">Treespace visualization of a heuristic best tree search in <a href="https://twitter.com/hashtag/R?src=hash&amp;ref_src=twsrc%5Etfw">#R</a> package <a href="https://twitter.com/hashtag/ggtree?src=hash&amp;ref_src=twsrc%5Etfw">#ggtree</a> <a href="https://twitter.com/hashtag/phylogenetics?src=hash&amp;ref_src=twsrc%5Etfw">#phylogenetics</a> <a href="https://t.co/hnSJpIABql">pic.twitter.com/hnSJpIABql</a></p>&mdash; Alex DamiΓ‘nSerrano β‘‚ (@antropoteuthis) <a href="https://twitter.com/antropoteuthis/status/693123105707986944?ref_src=twsrc%5Etfw">January 29, 2016</a></blockquote>
404
+<script async src="https://platform.twitter.com/widgets.js" charset="utf-8"></script>
405
+<blockquote class="twitter-tweet"><p lang="en" dir="ltr"><a href="https://twitter.com/guangchuangyu?ref_src=twsrc%5Etfw">@guangchuangyu</a> Updated to latest <a href="https://twitter.com/hashtag/ggtree?src=hash&amp;ref_src=twsrc%5Etfw">#ggtree</a> and <a href="https://twitter.com/hashtag/ggplot2?src=hash&amp;ref_src=twsrc%5Etfw">#ggplot2</a> and very impressed! Any ideas on using geom_label with tip labels to add box/fill?</p>&mdash; Jo Williams-Newkirk (@ajwnewkirk) <a href="https://twitter.com/ajwnewkirk/status/691762302492790788?ref_src=twsrc%5Etfw">January 25, 2016</a></blockquote>
406
+<script async src="https://platform.twitter.com/widgets.js" charset="utf-8"></script>
407
+<blockquote class="twitter-tweet"><p lang="en" dir="ltr">ggtree looks really good! <a href="https://twitter.com/hashtag/rstats?src=hash&amp;ref_src=twsrc%5Etfw">#rstats</a><a href="https://t.co/7rtexYV3I5">https://t.co/7rtexYV3I5</a></p>&mdash; Paul Staab (@paulstaab) <a href="https://twitter.com/paulstaab/status/687933344219312128?ref_src=twsrc%5Etfw">January 15, 2016</a></blockquote>
408
+<script async src="https://platform.twitter.com/widgets.js" charset="utf-8"></script>
409
+<blockquote class="twitter-tweet"><p lang="en" dir="ltr">If you’re not using ggtree by <a href="https://twitter.com/guangchuangyu?ref_src=twsrc%5Etfw">@guangchuangyu</a> for your trees in R then you should be! <a href="https://twitter.com/hashtag/rstats?src=hash&amp;ref_src=twsrc%5Etfw">#rstats</a> <a href="https://twitter.com/hashtag/bioinformatics?src=hash&amp;ref_src=twsrc%5Etfw">#bioinformatics</a><a href="https://t.co/Z8HdLeyiIg">https://t.co/Z8HdLeyiIg</a></p>&mdash; Matt Workentine (@mworkentine) <a href="https://twitter.com/mworkentine/status/684411780412526592?ref_src=twsrc%5Etfw">January 5, 2016</a></blockquote>
410
+<script async src="https://platform.twitter.com/widgets.js" charset="utf-8"></script>
411
+<blockquote class="twitter-tweet"><p lang="en" dir="ltr"><a href="https://twitter.com/guangchuangyu?ref_src=twsrc%5Etfw">@guangchuangyu</a> <a href="https://twitter.com/hashtag/ggtree?src=hash&amp;ref_src=twsrc%5Etfw">#ggtree</a> has actually changed my life! it is <a href="https://twitter.com/hashtag/awesome?src=hash&amp;ref_src=twsrc%5Etfw">#awesome</a>! <a href="https://twitter.com/hashtag/RePlottingEveryTreeFigureEver?src=hash&amp;ref_src=twsrc%5Etfw">#RePlottingEveryTreeFigureEver</a> <a href="https://twitter.com/hashtag/ggplot2?src=hash&amp;ref_src=twsrc%5Etfw">#ggplot2</a></p>&mdash; Peter Cowman (@pete_cowman) <a href="https://twitter.com/pete_cowman/status/665188011047563268?ref_src=twsrc%5Etfw">November 13, 2015</a></blockquote>
412
+<script async src="https://platform.twitter.com/widgets.js" charset="utf-8"></script>
413
+<blockquote class="twitter-tweet"><p lang="en" dir="ltr">I continue to be amazed by the speed and quality of support <a href="https://twitter.com/guangchuangyu?ref_src=twsrc%5Etfw">@guangchuangyu</a> provides for <a href="https://twitter.com/hashtag/ggtree?src=hash&amp;ref_src=twsrc%5Etfw">#ggtree</a> <a href="https://twitter.com/hashtag/rstats?src=hash&amp;ref_src=twsrc%5Etfw">#rstats</a></p>&mdash; Jo Williams-Newkirk (@ajwnewkirk) <a href="https://twitter.com/ajwnewkirk/status/664040586001915904?ref_src=twsrc%5Etfw">November 10, 2015</a></blockquote>
414
+<script async src="https://platform.twitter.com/widgets.js" charset="utf-8"></script>
415
+<blockquote class="twitter-tweet"><p lang="en" dir="ltr"><a href="https://twitter.com/tylerrinker?ref_src=twsrc%5Etfw">@tylerrinker</a> really appreciate all of <a href="https://twitter.com/guangchuangyu?ref_src=twsrc%5Etfw">@guangchuangyu</a> efforts with <a href="https://twitter.com/hashtag/ggtree?src=hash&amp;ref_src=twsrc%5Etfw">#ggtree</a>; extends well beyond its original intent; love it</p>&mdash; timelyportfolio (@timelyportfolio) <a href="https://twitter.com/timelyportfolio/status/639507420054749184?ref_src=twsrc%5Etfw">September 3, 2015</a></blockquote>
416
+<script async src="https://platform.twitter.com/widgets.js" charset="utf-8"></script>
417
+<blockquote class="twitter-tweet"><p lang="en" dir="ltr"><a href="https://twitter.com/guangchuangyu?ref_src=twsrc%5Etfw">@guangchuangyu</a> I even used <a href="https://twitter.com/hashtag/ggtree?src=hash&amp;ref_src=twsrc%5Etfw">#ggtree</a>!</p>&mdash; Simon Frost (@sdwfrost) <a href="https://twitter.com/sdwfrost/status/671673570259509248?ref_src=twsrc%5Etfw">December 1, 2015</a></blockquote>
418
+<script async src="https://platform.twitter.com/widgets.js" charset="utf-8"></script>
419
+<blockquote class="twitter-tweet"><p lang="en" dir="ltr"><a href="https://twitter.com/minisciencegirl?ref_src=twsrc%5Etfw">@minisciencegirl</a> Yep we use it mainly for that... there&#39;s a more featured version in <a href="https://t.co/5oOeLwx2Hg">https://t.co/5oOeLwx2Hg</a> but I need to switch to ggtree!</p>&mdash; Kat Holt (@DrKatHolt) <a href="https://twitter.com/DrKatHolt/status/667490462693912576?ref_src=twsrc%5Etfw">November 19, 2015</a></blockquote>
420
+<script async src="https://platform.twitter.com/widgets.js" charset="utf-8"></script>
421
+<blockquote class="twitter-tweet"><p lang="en" dir="ltr">Sent my first <a href="https://twitter.com/hashtag/rstats?src=hash&amp;ref_src=twsrc%5Etfw">#rstats</a> <a href="https://twitter.com/hashtag/shiny?src=hash&amp;ref_src=twsrc%5Etfw">#shiny</a> app off to be alpha tested by a colleague today. Wouldn&#39;t be possible without <a href="https://twitter.com/hashtag/ggtree?src=hash&amp;ref_src=twsrc%5Etfw">#ggtree</a>.</p>&mdash; Jo Williams-Newkirk (@ajwnewkirk) <a href="https://twitter.com/ajwnewkirk/status/660278158663401473?ref_src=twsrc%5Etfw">October 31, 2015</a></blockquote>
422
+<script async src="https://platform.twitter.com/widgets.js" charset="utf-8"></script>
423
+<blockquote class="twitter-tweet"><p lang="en" dir="ltr"><a href="https://twitter.com/genetics_blog?ref_src=twsrc%5Etfw">@genetics_blog</a> Thanks. We have turned this into a shiny app too, but need to iron out some bugs... Also, try the new ggtree library!</p>&mdash; Kat Holt (@DrKatHolt) <a href="https://twitter.com/DrKatHolt/status/641251456595685376?ref_src=twsrc%5Etfw">September 8, 2015</a></blockquote>
424
+<script async src="https://platform.twitter.com/widgets.js" charset="utf-8"></script>
425
+<blockquote class="twitter-tweet"><p lang="en" dir="ltr"><a href="https://twitter.com/guangchuangyu?ref_src=twsrc%5Etfw">@guangchuangyu</a> My bad :( It&#39;s working perfectly fine. Thanks so much for an awesome <a href="https://twitter.com/hashtag/rstats?src=hash&amp;ref_src=twsrc%5Etfw">#rstats</a> <a href="https://twitter.com/hashtag/ggplot2?src=hash&amp;ref_src=twsrc%5Etfw">#ggplot2</a> package ggtree! <a href="http://t.co/ofmzyOWe9C">pic.twitter.com/ofmzyOWe9C</a></p>&mdash; Ahmed Moustafa (@AhmedMoustafa) <a href="https://twitter.com/AhmedMoustafa/status/559734740488818688?ref_src=twsrc%5Etfw">January 26, 2015</a></blockquote>
426
+<script async src="https://platform.twitter.com/widgets.js" charset="utf-8"></script>
427
+<blockquote class="twitter-tweet"><p lang="en" dir="ltr"><a href="https://twitter.com/guangchuangyu?ref_src=twsrc%5Etfw">@guangchuangyu</a> A bit improved version :) <a href="http://t.co/TZTSBK5aSm">pic.twitter.com/TZTSBK5aSm</a></p>&mdash; Ahmed Moustafa (@AhmedMoustafa) <a href="https://twitter.com/AhmedMoustafa/status/559762891478667264?ref_src=twsrc%5Etfw">January 26, 2015</a></blockquote>
428
+<script async src="https://platform.twitter.com/widgets.js" charset="utf-8"></script>
429
+<blockquote class="twitter-tweet"><p lang="en" dir="ltr">I wish this guy was my student! <a href="https://twitter.com/guangchuangyu?ref_src=twsrc%5Etfw">@guangchuangyu</a> Sure, it won&#39;t get a Nature or Science paper, but who cares? <a href="http://t.co/XnA7uaFVms">http://t.co/XnA7uaFVms</a></p>&mdash; Simon Frost (@sdwfrost) <a href="https://twitter.com/sdwfrost/status/561514846291001344?ref_src=twsrc%5Etfw">January 31, 2015</a></blockquote>
430
+<script async src="https://platform.twitter.com/widgets.js" charset="utf-8"></script>
431
+<blockquote class="twitter-tweet"><p lang="en" dir="ltr"><a href="https://twitter.com/CieraReports?ref_src=twsrc%5Etfw">@CieraReports</a> ggtree is a cool package that is based on the drawing of ggplot2 <a href="https://t.co/gFPHSdGAj1">https://t.co/gFPHSdGAj1</a></p>&mdash; Uryu Shinya (@u_ribo) <a href="https://twitter.com/u_ribo/status/559542705663905793?ref_src=twsrc%5Etfw">January 26, 2015</a></blockquote>
432
+<script async src="https://platform.twitter.com/widgets.js" charset="utf-8"></script>
433
+<blockquote class="twitter-tweet"><p lang="en" dir="ltr"><a href="https://twitter.com/hashtag/ggtree?src=hash&amp;ref_src=twsrc%5Etfw">#ggtree</a> <a href="https://t.co/VFrKCcz0DI">https://t.co/VFrKCcz0DI</a> is a pretty powerful <a href="https://twitter.com/hashtag/rstats?src=hash&amp;ref_src=twsrc%5Etfw">#rstats</a> <a href="https://twitter.com/hashtag/ggplot2?src=hash&amp;ref_src=twsrc%5Etfw">#ggplot2</a> <a href="https://twitter.com/Bioconductor?ref_src=twsrc%5Etfw">@Bioconductor</a> pkg for neat <a href="https://twitter.com/hashtag/phylogenetic?src=hash&amp;ref_src=twsrc%5Etfw">#phylogenetic</a> <a href="https://twitter.com/hashtag/dataviz?src=hash&amp;ref_src=twsrc%5Etfw">#dataviz</a> by <a href="https://twitter.com/guangchuangyu?ref_src=twsrc%5Etfw">@guangchuangyu</a></p>&mdash; Ahmed Moustafa (@AhmedMoustafa) <a href="https://twitter.com/AhmedMoustafa/status/561056244782227456?ref_src=twsrc%5Etfw">January 30, 2015</a></blockquote>
434
+<script async src="https://platform.twitter.com/widgets.js" charset="utf-8"></script>
435
+<blockquote class="twitter-tweet"><p lang="en" dir="ltr">ggtree extends ggplot2 for phylogenetic trees. tons of documentation+examples: <a href="https://t.co/y9V52s2yWd">https://t.co/y9V52s2yWd</a> <a href="https://twitter.com/hashtag/Rstats?src=hash&amp;ref_src=twsrc%5Etfw">#Rstats</a> <a href="https://t.co/Z9SDcueR2c">pic.twitter.com/Z9SDcueR2c</a></p>&mdash; Stephen Turner (@strnr) <a href="https://twitter.com/strnr/status/664085841766195200?ref_src=twsrc%5Etfw">November 10, 2015</a></blockquote>
436
+<script async src="https://platform.twitter.com/widgets.js" charset="utf-8"></script>
437
+<blockquote class="twitter-tweet"><p lang="en" dir="ltr">Need to visualize some trees? Recent  <a href="https://twitter.com/hashtag/R?src=hash&amp;ref_src=twsrc%5Etfw">#R</a> package <a href="https://twitter.com/hashtag/ggtree?src=hash&amp;ref_src=twsrc%5Etfw">#ggtree</a> looks quite interesting. <a href="https://t.co/EPaXIqmvDZ">https://t.co/EPaXIqmvDZ</a></p>&mdash; Sebastian Schmidt (@TSBSchm) <a href="https://twitter.com/TSBSchm/status/664431087683260416?ref_src=twsrc%5Etfw">November 11, 2015</a></blockquote>
438
+<script async src="https://platform.twitter.com/widgets.js" charset="utf-8"></script>
439
+<blockquote class="twitter-tweet"><p lang="en" dir="ltr"><a href="https://twitter.com/flashton2003?ref_src=twsrc%5Etfw">@flashton2003</a> world of possibilities now! Also looking at ggtree (ggplot2 expansion) for future stuff - that looks really cool too</p>&mdash; David W. Cleary (@Bacterioskeptic) <a href="https://twitter.com/Bacterioskeptic/status/667706456045694976?ref_src=twsrc%5Etfw">November 20, 2015</a></blockquote>
440
+<script async src="https://platform.twitter.com/widgets.js" charset="utf-8"></script>
441
+<blockquote class="twitter-tweet"><p lang="en" dir="ltr">time for you to learn <a href="https://twitter.com/hashtag/rstats?src=hash&amp;ref_src=twsrc%5Etfw">#rstats</a> <a href="https://twitter.com/LAevolving?ref_src=twsrc%5Etfw">@LAevolving</a> &lt;- <a href="https://twitter.com/stephspiel?ref_src=twsrc%5Etfw">@StephSpiel</a> new <a href="https://twitter.com/hashtag/Rstats?src=hash&amp;ref_src=twsrc%5Etfw">#Rstats</a> package ggtree <a href="https://twitter.com/ggplot2?ref_src=twsrc%5Etfw">@ggplot2</a> <a href="https://t.co/DFmKGyTVwE">https://t.co/DFmKGyTVwE</a> <a href="https://t.co/WRBZHlRsIa">pic.twitter.com/WRBZHlRsIa</a></p>&mdash; Salamanda (@ajzellmer) <a href="https://twitter.com/ajzellmer/status/663937183791759360?ref_src=twsrc%5Etfw">November 10, 2015</a></blockquote>
442
+<script async src="https://platform.twitter.com/widgets.js" charset="utf-8"></script>
443
+<blockquote class="twitter-tweet"><p lang="en" dir="ltr">V. cool new <a href="https://twitter.com/hashtag/Rstats?src=hash&amp;ref_src=twsrc%5Etfw">#Rstats</a> package ggtree, addon 2 <a href="https://twitter.com/ggplot2?ref_src=twsrc%5Etfw">@ggplot2</a>, for automating tree drawing/annotating <a href="https://t.co/k3eSdVKp9C">https://t.co/k3eSdVKp9C</a> <a href="https://t.co/nH8SKSaXaN">pic.twitter.com/nH8SKSaXaN</a></p>&mdash; Stephanie Spielman (@stephspiel) <a href="https://twitter.com/stephspiel/status/663771499589861376?ref_src=twsrc%5Etfw">November 9, 2015</a></blockquote>
444
+<script async src="https://platform.twitter.com/widgets.js" charset="utf-8"></script>
445
+<blockquote class="twitter-tweet"><p lang="en" dir="ltr">Can’t wait to try. MT <a href="https://twitter.com/genetics_blog?ref_src=twsrc%5Etfw">@genetics_blog</a>: ggtree extends ggplot2 for phylogenetic trees: <a href="https://t.co/JuThXlHUjz">https://t.co/JuThXlHUjz</a> <a href="https://twitter.com/hashtag/Rstats?src=hash&amp;ref_src=twsrc%5Etfw">#Rstats</a> <a href="https://t.co/OmAzGghvqB">pic.twitter.com/OmAzGghvqB</a></p>&mdash; Kent Holsinger (@keholsinger) <a href="https://twitter.com/keholsinger/status/667433534756397057?ref_src=twsrc%5Etfw">November 19, 2015</a></blockquote>
446
+<script async src="https://platform.twitter.com/widgets.js" charset="utf-8"></script>
447
+<blockquote class="twitter-tweet"><p lang="en" dir="ltr"><a href="https://twitter.com/guangchuangyu?ref_src=twsrc%5Etfw">@guangchuangyu</a> Excited to discover <a href="https://twitter.com/hashtag/ggtree?src=hash&amp;ref_src=twsrc%5Etfw">#ggtree</a>; fills a lot of holes in my workflow but not seeing how to add bootstrap from ape?</p>&mdash; Jo Williams-Newkirk (@ajwnewkirk) <a href="https://twitter.com/ajwnewkirk/status/640573716733169664?ref_src=twsrc%5Etfw">September 6, 2015</a></blockquote>
448
+<script async src="https://platform.twitter.com/widgets.js" charset="utf-8"></script>
449
+<blockquote class="twitter-tweet"><p lang="en" dir="ltr">ggtree added cool features, My favorite is the one from BEAST output <a href="https://t.co/3WOLxfTzRp">https://t.co/3WOLxfTzRp</a></p>&mdash; Manvendra Singh (@manvendr7) <a href="https://twitter.com/manvendr7/status/664407764001779712?ref_src=twsrc%5Etfw">November 11, 2015</a></blockquote>
450
+<script async src="https://platform.twitter.com/widgets.js" charset="utf-8"></script>
451
+<blockquote class="twitter-tweet"><p lang="en" dir="ltr">ggtree looks useful: nice viz and annotations of phylogenetic trees with ggplot  <a href="https://twitter.com/hashtag/rstats?src=hash&amp;ref_src=twsrc%5Etfw">#rstats</a> <a href="http://t.co/lbNKw3qIDI">http://t.co/lbNKw3qIDI</a>  thanks <a href="https://twitter.com/guangchuangyu?ref_src=twsrc%5Etfw">@guangchuangyu</a></p>&mdash; Julia Gustavsen (@JuliaGustavsen) <a href="https://twitter.com/JuliaGustavsen/status/630500659960254464?ref_src=twsrc%5Etfw">August 9, 2015</a></blockquote>
452
+<script async src="https://platform.twitter.com/widgets.js" charset="utf-8"></script>
453
+<blockquote class="twitter-tweet"><p lang="en" dir="ltr">ggtree - looks like a very useful phylogenetic tree plotting package for R based on ggplot2 (<a href="https://t.co/UCXVVmG5W7">https://t.co/UCXVVmG5W7</a>)</p>&mdash; Simon J Greenhill (@SimonJGreenhill) <a href="https://twitter.com/SimonJGreenhill/status/547497335412899840?ref_src=twsrc%5Etfw">December 23, 2014</a></blockquote>
454
+<script async src="https://platform.twitter.com/widgets.js" charset="utf-8"></script>
455
+<blockquote class="twitter-tweet"><p lang="en" dir="ltr">Plot trees &amp; annotation (incl BEAST, time axis) with ggtree for R!<a href="http://t.co/9ahqKQLTaI">http://t.co/9ahqKQLTaI</a><br>Well spotted <a href="https://twitter.com/mackas21?ref_src=twsrc%5Etfw">@mackas21</a> <a href="http://t.co/2ldvAiH2fj">pic.twitter.com/2ldvAiH2fj</a></p>&mdash; Kat Holt (@DrKatHolt) <a href="https://twitter.com/DrKatHolt/status/610364467939913728?ref_src=twsrc%5Etfw">June 15, 2015</a></blockquote>
456
+<script async src="https://platform.twitter.com/widgets.js" charset="utf-8"></script>
457
+</p>
402 458
 
403 459
 
404 460
 			<aside class="copyright" role="note">
... ...
@@ -19,11 +19,11 @@
19 19
       
20 20
       <guid>https://guangchuangyu.github.io/ggtree/tweets/</guid>
21 21
       <description>Leave me a message on 
22
-Now on https://t.co/50tYJLLZqc - a spotlight on the Top Tools for R Programming:
22
+Thank you so much @guangchuangyu! #ggtree is the easy way for my phd data analysis &amp;lt;3 love it!
23
+&amp;mdash; Francisco Romero (@pinchehippie) October 17, 2017  Now on https://t.co/50tYJLLZqc - a spotlight on the Top Tools for R Programming:
23 24
 ggtree made the list!https://t.co/YQv7FeegpM pic.twitter.com/hGn7nBfbEJ
24
-&amp;mdash; LabWorm (@TheLabWorm) September 27, 2017 geom_hilight_encircle for unrooted layout #ggtree #rstats pic.twitter.com/1wIwgwUduf
25
-&amp;mdash; Guangchuang Yu (@guangchuangyu) September 12, 2017 New Post: Plotting a Sequential Binary Partition on a Tree in R @alex_washburne @guangchuangyu https://t.co/6jQKMof5aW
26
-&amp;mdash; Justin Silverman (@inschool4life) September 21, 2017 blog: Introduction to ggplot2 and to ggtree πŸ“πŸ“ˆπŸ‘¨β€πŸ”¬πŸ‘©β€πŸ”¬ #rstats #phdchat https://t.</description>
25
+&amp;mdash; LabWorm (@TheLabWorm) September 27, 2017  geom_hilight_encircle for unrooted layout #ggtree #rstats pic.twitter.com/1wIwgwUduf
26
+&amp;mdash; Guangchuang Yu (@guangchuangyu) September 12, 2017  New Post: Plotting a Sequential Binary Partition on a Tree in R @alex_washburne @guangchuangyu https://t.</description>
27 27
     </item>
28 28
     
29 29
   </channel>
... ...
@@ -9,7 +9,7 @@ weight: 1
9 9
 
10 10
 <p><link rel="stylesheet" href="https://guangchuangyu.github.io/css/font-awesome.min.css"> <link rel="stylesheet" href="https://guangchuangyu.github.io/css/academicons.min.css"></p>
11 11
 <p><img src="https://raw.githubusercontent.com/Bioconductor/BiocStickers/master/ggtree/ggtree.png" height="200" align="right" /></p>
12
-<p><a href="https://bioconductor.org/packages/ggtree"><img src="https://img.shields.io/badge/release%20version-1.8.2-blue.svg?style=flat" alt="releaseVersion" /></a> <a href="https://github.com/guangchuangyu/ggtree"><img src="https://img.shields.io/badge/devel%20version-1.9.4-blue.svg?style=flat" alt="develVersion" /></a> <a href="https://bioconductor.org/packages/stats/bioc/ggtree"><img src="https://img.shields.io/badge/downloads-19498/total-blue.svg?style=flat" alt="total" /></a> <a href="https://bioconductor.org/packages/stats/bioc/ggtree"><img src="https://img.shields.io/badge/downloads-941/month-blue.svg?style=flat" alt="month" /></a></p>
12
+<p><a href="https://bioconductor.org/packages/ggtree"><img src="https://img.shields.io/badge/release%20version-1.10.0-blue.svg?style=flat" alt="releaseVersion" /></a> <a href="https://github.com/guangchuangyu/ggtree"><img src="https://img.shields.io/badge/devel%20version-1.9.4-blue.svg?style=flat" alt="develVersion" /></a> <a href="https://bioconductor.org/packages/stats/bioc/ggtree"><img src="https://img.shields.io/badge/downloads-20560/total-blue.svg?style=flat" alt="total" /></a> <a href="https://bioconductor.org/packages/stats/bioc/ggtree"><img src="https://img.shields.io/badge/downloads-986/month-blue.svg?style=flat" alt="month" /></a></p>
13 13
 <p>The <code>ggtree</code> package extending the <em>ggplot2</em> package. It based on grammar of graphics and takes all the good parts of <em>ggplot2</em>. <em>ggtree</em> is designed for not only viewing phylogenetic tree but also displaying annotation data on the tree. <em>ggtree</em> is released within the <a href="https://bioconductor.org/packages/ggtree/">Bioconductor</a> project and the source code is hosted on <a href="https://github.com/GuangchuangYu/ggtree"><i class="fa fa-github fa-lg"></i> GitHub</a>.</p>
14 14
 <div id="authors" class="section level2">
15 15
 <h2><i class="fa fa-user"></i> Authors</h2>
... ...
@@ -18,7 +18,7 @@ weight: 1
18 18
 <div id="citation" class="section level2">
19 19
 <h2><i class="fa fa-book"></i> Citation</h2>
20 20
 <p>Please cite the following article when using <code>ggtree</code>:</p>
21
-<p><a href="http://dx.doi.org/10.1111/2041-210X.12628"><img src="https://img.shields.io/badge/doi-10.1111/2041--210X.12628-blue.svg?style=flat" alt="doi" /></a> <a href="https://www.altmetric.com/details/10533079"><img src="https://img.shields.io/badge/Altmetric-342-blue.svg?style=flat" alt="Altmetric" /></a> <a href="https://scholar.google.com.hk/scholar?oi=bibs&amp;hl=en&amp;cites=7268358477862164627"><img src="https://img.shields.io/badge/cited%20by-40-blue.svg?style=flat" alt="citation" /></a></p>
21
+<p><a href="http://dx.doi.org/10.1111/2041-210X.12628"><img src="https://img.shields.io/badge/doi-10.1111/2041--210X.12628-blue.svg?style=flat" alt="doi" /></a> <a href="https://www.altmetric.com/details/10533079"><img src="https://img.shields.io/badge/Altmetric-338-blue.svg?style=flat" alt="Altmetric" /></a> <a href="https://scholar.google.com.hk/scholar?oi=bibs&amp;hl=en&amp;cites=7268358477862164627"><img src="https://img.shields.io/badge/cited%20by-42-blue.svg?style=flat" alt="citation" /></a></p>
22 22
 <p><strong>G Yu</strong>, DK Smith, H Zhu, Y Guan, TTY Lam<sup>*</sup>. ggtree: an R package for visualization and annotation of phylogenetic trees with their covariates and other associated data. <strong><em>Methods in Ecology and Evolution</em></strong>. 2017, 8(1):28-36.</p>
23 23
 </div>
24 24
 <div id="featured-articles" class="section level2">
... ...
@@ -8,4 +8,4 @@ weight: 50
8 8
 
9 9
 <p><link rel="stylesheet" href="https://guangchuangyu.github.io/css/font-awesome.min.css"></p>
10 10
 <p><font size="4"><strong>Leave me a message on <a href="https://twitter.com/hashtag/ggtree"><i class="fa fa-twitter fa-lg"></i></a></strong></font></p>
11
-<p>{{% tweet 912971120198012929 %}}{{% tweet 907543915686793217 %}}{{% tweet 910671384069722112 %}}{{% tweet 903786057182957568 %}}{{% tweet 899635001247059969 %}}{{% tweet 898729425168080897 %}}{{% tweet 891144389715783680 %}}{{% tweet 883301626022375424 %}}{{% tweet 883246854695256064 %}}{{% tweet 877576023109390336 %}}{{% tweet 875594411584782337 %}}{{% tweet 871775262152810496 %}}{{% tweet 867408666852511744 %}}{{% tweet 857665638600507393 %}}{{% tweet 840181267542994944 %}}{{% tweet 839831849736232962 %}}{{% tweet 830023569887391744 %}}{{% tweet 829398997735313408 %}}{{% tweet 824264788456984576 %}}{{% tweet 822383911258890242 %}}{{% tweet 811666431452450816 %}}{{% tweet 811661275889549312 %}}{{% tweet 797041236867686400 %}}{{% tweet 797037016403820546 %}}{{% tweet 794278716859879424 %}}{{% tweet 831952966701678592 %}}{{% tweet 788751417746059264 %}}{{% tweet 693123105707986944 %}}{{% tweet 691762302492790788 %}}{{% tweet 687933344219312128 %}}{{% tweet 684411780412526592 %}}{{% tweet 665188011047563268 %}}{{% tweet 664040586001915904 %}}{{% tweet 639507420054749184 %}}{{% tweet 671673570259509248 %}}{{% tweet 667490462693912576 %}}{{% tweet 660278158663401473 %}}{{% tweet 641251456595685376 %}}{{% tweet 559734740488818688 %}}{{% tweet 559762891478667264 %}}{{% tweet 561514846291001344 %}}{{% tweet 559542705663905793 %}}{{% tweet 561056244782227456 %}}{{% tweet 664085841766195200 %}}{{% tweet 664431087683260416 %}}{{% tweet 667706456045694976 %}}{{% tweet 663937183791759360 %}}{{% tweet 663771499589861376 %}}{{% tweet 667433534756397057 %}}{{% tweet 640573716733169664 %}}{{% tweet 664407764001779712 %}}{{% tweet 630500659960254464 %}}{{% tweet 547497335412899840 %}}{{% tweet 610364467939913728 %}}</p>
11
+<p>{{% tweet 920370392451178496 %}}{{% tweet 912971120198012929 %}}{{% tweet 907543915686793217 %}}{{% tweet 910671384069722112 %}}{{% tweet 903786057182957568 %}}{{% tweet 899635001247059969 %}}{{% tweet 898729425168080897 %}}{{% tweet 891144389715783680 %}}{{% tweet 883301626022375424 %}}{{% tweet 883246854695256064 %}}{{% tweet 877576023109390336 %}}{{% tweet 875594411584782337 %}}{{% tweet 871775262152810496 %}}{{% tweet 867408666852511744 %}}{{% tweet 857665638600507393 %}}{{% tweet 840181267542994944 %}}{{% tweet 839831849736232962 %}}{{% tweet 830023569887391744 %}}{{% tweet 829398997735313408 %}}{{% tweet 824264788456984576 %}}{{% tweet 822383911258890242 %}}{{% tweet 811666431452450816 %}}{{% tweet 811661275889549312 %}}{{% tweet 797041236867686400 %}}{{% tweet 797037016403820546 %}}{{% tweet 794278716859879424 %}}{{% tweet 831952966701678592 %}}{{% tweet 788751417746059264 %}}{{% tweet 693123105707986944 %}}{{% tweet 691762302492790788 %}}{{% tweet 687933344219312128 %}}{{% tweet 684411780412526592 %}}{{% tweet 665188011047563268 %}}{{% tweet 664040586001915904 %}}{{% tweet 639507420054749184 %}}{{% tweet 671673570259509248 %}}{{% tweet 667490462693912576 %}}{{% tweet 660278158663401473 %}}{{% tweet 641251456595685376 %}}{{% tweet 559734740488818688 %}}{{% tweet 559762891478667264 %}}{{% tweet 561514846291001344 %}}{{% tweet 559542705663905793 %}}{{% tweet 561056244782227456 %}}{{% tweet 664085841766195200 %}}{{% tweet 664431087683260416 %}}{{% tweet 667706456045694976 %}}{{% tweet 663937183791759360 %}}{{% tweet 663771499589861376 %}}{{% tweet 667433534756397057 %}}{{% tweet 640573716733169664 %}}{{% tweet 664407764001779712 %}}{{% tweet 630500659960254464 %}}{{% tweet 547497335412899840 %}}{{% tweet 610364467939913728 %}}</p>
... ...
@@ -11,6 +11,7 @@ weight: 50
11 11
 
12 12
 
13 13
 ````{r echo=FALSE}
14
+blogdown::shortcode('tweet', '920370392451178496')
14 15
 blogdown::shortcode('tweet', '912971120198012929')
15 16
 blogdown::shortcode('tweet', '907543915686793217')
16 17
 blogdown::shortcode('tweet', '910671384069722112')