GuangchuangYu authored on 21/01/2017 04:04:10
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Rscript -e 'library(ypages); gendoc("src/index.md", "blue", "docs/index.md")';\
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Rscript -e 'library(ypages); gendoc("src/documentation.md", "blue", "docs/documentation.md")';\
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Rscript -e 'library(ypages); gendoc("src/featuredArticles.md", "blue", "docs/featuredArticles.md")';\
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+ Rscript -e 'library(ypages); gendoc("src/gallery.md", "blue", "docs/gallery.md")';\
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Rscript -e 'library(ypages); gendoc("src/faq.md", "blue", "docs/faq.md")';\
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cd docs;\ |
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ln -f -s ../mysoftware/* ./ |
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@@ -84,6 +84,12 @@ |
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+ <li > |
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+ <a href="../gallery/">Gallery</a> |
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+ </li> |
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+ |
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+ |
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+ |
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<li class="dropdown active"> |
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<a href="#" class="dropdown-toggle" data-toggle="dropdown">My Software <b class="caret"></b></a> |
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<ul class="dropdown-menu"> |
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</a> |
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</li> |
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<li > |
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- <a rel="next" href="../featuredArticles/"> |
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+ <a rel="next" href="../gallery/"> |
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<i class="fa fa-arrow-left"></i> Previous |
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</a> |
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</li> |
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+ <li > |
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+ <a href="../gallery/">Gallery</a> |
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+ </li> |
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+ |
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+ |
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+ |
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<li class="dropdown"> |
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<a href="#" class="dropdown-toggle" data-toggle="dropdown">My Software <b class="caret"></b></a> |
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<ul class="dropdown-menu"> |
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@@ -161,7 +167,7 @@ |
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</a> |
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</li> |
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<li > |
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- <a rel="prev" href="../ChIPseeker/"> |
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+ <a rel="prev" href="../gallery/"> |
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Next <i class="fa fa-arrow-right"></i> |
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</a> |
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</li> |
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<li class="main "><a href="#2016"> 2016</a></li> |
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- <li class="main "><a href="#2015"> 2015</a></li> |
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- |
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- |
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</ul> |
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</div></div> |
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<div class="col-md-9" role="main"> |
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} |
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</style> |
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-<div id = 'chart7ea0521d7be6' class = 'rChart morris'></div> |
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+<div id = 'chart1bc474772a20' class = 'rChart morris'></div> |
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<script type='text/javascript'> |
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var chartParams = {
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- "element": "chart7ea0521d7be6", |
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+ "element": "chart1bc474772a20", |
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"width": 800, |
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"height": 400, |
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"xkey": "year", |
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@@ -255,7 +258,7 @@ |
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"pubid": "HtEfBTGE9r8C" |
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} |
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], |
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-"id": "chart7ea0521d7be6", |
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+"id": "chart1bc474772a20", |
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"labels": "cites" |
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}, |
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chartType = "Bar" |
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@@ -265,28 +268,7 @@ |
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<h2 id="2017"><i class="fa fa-calendar"></i> 2017</h2> |
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<p><a href="http://dx.doi.org/10.1073/pnas.1617959114">Phylogenetic analysis of the human antibody repertoire reveals quantitative signatures of immune senescence and aging</a>. <strong><em>PNAS</em></strong>, 2017</p> |
| 267 | 270 |
<h2 id="2016"><i class="fa fa-calendar"></i> 2016</h2> |
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-<p>Lack of GLYCOLATE OXIDASE 1, but not GLYCOLATE OXIDASE 2, attenuates the photorespiratory phenotype of CATALASE2-deficient <em>Arabidopsis</em></p> |
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-<p><strong>Plant Physiology</strong> May. 2016 <http://dx.doi.org/10.1104/pp.16.00359></p> |
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-<p><img alt="" src="https://guangchuangyu.github.io/featured_img/ggtree/2016_PlantPhysiology.png" /></p> |
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-<p>Range overlap drives chromosome inversion fixation in passerine birds</p> |
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-<p><strong>bioRxiv</strong> May. 2016 <a href="http://dx.doi.org/10.1101/053371">http://dx.doi.org/10.1101/053371</a></p> |
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-<p><img alt="" src="https://guangchuangyu.github.io/featured_img/ggtree/passerine_birds.png" /></p> |
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-<p>Phenotypic and Genotypic Characteristics of Shiga Toxin-Producing Escherichia coli Isolated from Surface Waters and Sediments in a Canadian Urban-Agricultural Landscape</p> |
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-<p><strong>Front. Cell. Infect. Microbiol.</strong> Apr. 2016 <a href="http://dx.doi.org/10.3389%2Ffcimb.2016.00036">http://dx.doi.org/10.3389%2Ffcimb.2016.00036</a></p> |
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-<p><img alt="" src="https://guangchuangyu.github.io/featured_img/ggtree/2016_fcimb-06-00036-g003.jpg" /></p> |
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-<p><em>Ws-2</em> Introgression in a Proportion of <em>Arabidopsis thaliana Col-0</em> Stock Seed Produces Specific Phenotypes and Highlights the Importance of Routine Genetic Verification</p> |
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-<p><strong>Plant Cell</strong> Mar. 2016 <a href="http://dx.doi.org/10.1105/tpc.16.00053">http://dx.doi.org/10.1105/tpc.16.00053</a></p> |
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-<p><img alt="" src="https://guangchuangyu.github.io/featured_img/ggtree/plantcell_2016.png" /></p> |
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-<h2 id="2015"><i class="fa fa-calendar"></i> 2015</h2> |
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-<p>The population genetics of drug resistance evolution in natural populations of viral, bacterial and eukaryotic pathogens</p> |
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-<p><strong>Molecuar Ecology</strong> Dec. 2015 <a href="http://dx.doi.org/10.1111/mec.13474">http://dx.doi.org/10.1111/mec.13474</a></p> |
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-<p><img alt="" src="https://guangchuangyu.github.io/featured_img/ggtree/2015_ME_image_n_mec13474-fig-0003.png" /></p> |
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-<p>Genetic characterization of highly pathogenic H5 influenza viruses from poultry in Taiwan, 2015</p> |
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-<p><strong>Infection, Genetics and Evolution</strong> Dec. 2015 <a href="http://dx.doi.org/10.1016/j.meegid.2015.12.006">http://dx.doi.org/10.1016/j.meegid.2015.12.006</a></p> |
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-<p><img alt="" src="https://guangchuangyu.github.io/featured_img/ggtree/2015_peiyu_1-s2.0-S1567134815300721-gr1.jpg" /></p> |
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-<p>Trans-species polymorphism at antimicrobial innate immunity cathelicidin genes of Atlantic cod and related species</p> |
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-<p><strong>PeerJ</strong> May 2015 <a href="https://doi.org/10.7717/peerj.976">https://doi.org/10.7717/peerj.976</a></p> |
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-<p><img alt="" src="https://guangchuangyu.github.io/featured_img/ggtree/2015_peerJ_fig-9-2x.jpg" /></p></div> |
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+<p><a href="http://aem.asm.org/content/82/22/6788.short">Function and Phylogeny of Bacterial Butyryl Coenzyme A:Acetate Transferases and Their Diversity in the Proximal Colon of Swine</a>. <strong><em>Applied and Environmental Microbiology</em></strong>. 2016,82(22):6788-6798. </p></div> |
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</div> |
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<footer class="col-md-12"> |
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new file mode 100644 |
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+<!DOCTYPE html> |
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+<html lang="en"> |
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+ <head> |
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+ <meta charset="utf-8"> |
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+ <meta http-equiv="X-UA-Compatible" content="IE=edge"> |
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+ |
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+ <meta name="author" content="Guangchuang Yu"> |
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+ <link rel="canonical" href="https://guangchuangyu.github.io/ggtree/gallery/"> |
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+ <link rel="shortcut icon" href="../img/favicon.ico"> |
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+ |
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+ <title>Gallery - ggtree</title> |
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+ <link href="../css/bootstrap-custom.min.css" rel="stylesheet"> |
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+ <link href="../css/base.css" rel="stylesheet"> |
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+ <!-- Main navigation --> |
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+ <a href="../documentation/">Documentation</a> |
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+ <a href="../featuredArticles/">Featured Articles</a> |
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+ </li> |
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+ |
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+ </ul> |
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+ </ul> |
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+ |
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+ <!-- Search, Navigation and Repo links --> |
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+ <ul class="nav navbar-nav navbar-right"> |
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+ <i class="fa fa-search"></i> Search |
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+ <a rel="next" href="../featuredArticles/"> |
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+ <i class="fa fa-arrow-left"></i> Previous |
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+ </a> |
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+ </li> |
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+ <li > |
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+ <a rel="prev" href="../ChIPseeker/"> |
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+ Next <i class="fa fa-arrow-right"></i> |
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+ </ul> |
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+ </div> |
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+ |
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+ <div class="container"> |
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+ <div class="col-md-3"><div class="bs-sidebar hidden-print affix well" role="complementary"> |
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+ <ul class="nav bs-sidenav"> |
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+ |
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+ </ul> |
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+</div></div> |
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+ <div class="col-md-9" role="main"> |
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+ |
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+<!-- AddToAny BEGIN --> |
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+<div class="a2a_kit a2a_kit_size_32 a2a_default_style"> |
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+<a class="a2a_dd" href="//www.addtoany.com/share"></a> |
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+<a class="a2a_button_facebook"></a> |
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+<a class="a2a_button_twitter"></a> |
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+<a class="a2a_button_google_plus"></a> |
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+<a class="a2a_button_pinterest"></a> |
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+<a class="a2a_button_reddit"></a> |
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+<a class="a2a_button_sina_weibo"></a> |
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+<a class="a2a_button_wechat"></a> |
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+<a class="a2a_button_douban"></a> |
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+</div> |
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+ |
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+<script async src="//static.addtoany.com/menu/page.js"></script> |
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+ |
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+<!-- AddToAny END --> |
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+ |
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+<p><link rel="stylesheet" href="https://guangchuangyu.github.io/css/font-awesome.min.css"></p> |
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+<p><a href="https://github.com/GuangchuangYu/featured_img">Let us know</a> if you have published using <code>ggtree</code> and your publication will be featured here.</p> |
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+<p><a href="https://scholar.google.com.hk/scholar?oi=bibs&hl=en&cites=7268358477862164627"><img alt="citation" src="https://img.shields.io/badge/cited%20by-2-blue.svg?style=flat" /></a></p> |
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+<p><link rel='stylesheet' href=https://guangchuangyu.github.io/resume/css/morris.css> |
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+<script src='https://guangchuangyu.github.io/resume/css/jquery.min.js' type='text/javascript'></script> |
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+<script src='https://guangchuangyu.github.io/resume/css/raphael-min.js' type='text/javascript'></script> |
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+<script src='https://guangchuangyu.github.io/resume/css/morris-0.4.2.min.js' type='text/javascript'></script></p> |
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+<style> |
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+ .rChart {
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+ display: block; |
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+ margin-left: auto; |
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+ margin-right: auto; |
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+ width: 800px; |
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+ height: 300px; |
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+ } |
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+ </style> |
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+ |
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+<div id = 'chart1be632e92863' class = 'rChart morris'></div> |
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+ |
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+<script type='text/javascript'> |
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+ var chartParams = {
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+ "element": "chart1be632e92863", |
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+"width": 800, |
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+ "cites" |
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+], |
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+ "year": 2017, |
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|
| 220 |
+ "text": "Function and Phylogeny of Bacterial Butyryl Coenzyme A:Acetate Transferases and Their Diversity in the Proximal Colon of Swine . Applied and Environmental Microbiology . 2016,82(22):6788-6798.", |
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| 73 | 73 |
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## <i class="fa fa-calendar"></i> 2016 |
| 75 | 75 |
|
| 76 |
-Lack of GLYCOLATE OXIDASE 1, but not GLYCOLATE OXIDASE 2, attenuates the photorespiratory phenotype of CATALASE2-deficient *Arabidopsis* |
|
| 76 |
+[Function and Phylogeny of Bacterial Butyryl Coenzyme A:Acetate Transferases and Their Diversity in the Proximal Colon of Swine](http://aem.asm.org/content/82/22/6788.short). ***Applied and Environmental Microbiology***. 2016,82(22):6788-6798. |
|
| 77 | 77 |
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-**Plant Physiology** May. 2016 <http://dx.doi.org/10.1104/pp.16.00359> |
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- |
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- |
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- |
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-Range overlap drives chromosome inversion fixation in passerine birds |
|
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- |
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-**bioRxiv** May. 2016 <http://dx.doi.org/10.1101/053371> |
|
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- |
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- |
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- |
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-Phenotypic and Genotypic Characteristics of Shiga Toxin-Producing Escherichia coli Isolated from Surface Waters and Sediments in a Canadian Urban-Agricultural Landscape |
|
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- |
|
| 90 |
-**Front. Cell. Infect. Microbiol.** Apr. 2016 <http://dx.doi.org/10.3389%2Ffcimb.2016.00036> |
|
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- |
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| 92 |
- |
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- |
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-*Ws-2* Introgression in a Proportion of *Arabidopsis thaliana Col-0* Stock Seed Produces Specific Phenotypes and Highlights the Importance of Routine Genetic Verification |
|
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- |
|
| 96 |
-**Plant Cell** Mar. 2016 <http://dx.doi.org/10.1105/tpc.16.00053> |
|
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- |
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- |
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- |
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-## <i class="fa fa-calendar"></i> 2015 |
|
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- |
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-The population genetics of drug resistance evolution in natural populations of viral, bacterial and eukaryotic pathogens |
|
| 103 |
- |
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-**Molecuar Ecology** Dec. 2015 <http://dx.doi.org/10.1111/mec.13474> |
|
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- |
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- |
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-Genetic characterization of highly pathogenic H5 influenza viruses from poultry in Taiwan, 2015 |
|
| 109 |
- |
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-**Infection, Genetics and Evolution** Dec. 2015 <http://dx.doi.org/10.1016/j.meegid.2015.12.006> |
|
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- |
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- |
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- |
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-Trans-species polymorphism at antimicrobial innate immunity cathelicidin genes of Atlantic cod and related species |
|
| 115 |
- |
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-**PeerJ** May 2015 <https://doi.org/10.7717/peerj.976> |
|
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## <i class="fa fa-calendar"></i> 2016 |
| 19 | 19 |
|
| 20 |
-Lack of GLYCOLATE OXIDASE 1, but not GLYCOLATE OXIDASE 2, attenuates the photorespiratory phenotype of CATALASE2-deficient *Arabidopsis* |
|
| 20 |
+[Function and Phylogeny of Bacterial Butyryl Coenzyme A:Acetate Transferases and Their Diversity in the Proximal Colon of Swine](http://aem.asm.org/content/82/22/6788.short). ***Applied and Environmental Microbiology***. 2016,82(22):6788-6798. |
|
| 21 | 21 |
|
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-**Plant Physiology** May. 2016 <http://dx.doi.org/10.1104/pp.16.00359> |
|
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- |
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- |
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- |
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-Range overlap drives chromosome inversion fixation in passerine birds |
|
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- |
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-**bioRxiv** May. 2016 <http://dx.doi.org/10.1101/053371> |
|
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- |
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- |
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- |
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-Phenotypic and Genotypic Characteristics of Shiga Toxin-Producing Escherichia coli Isolated from Surface Waters and Sediments in a Canadian Urban-Agricultural Landscape |
|
| 33 |
- |
|
| 34 |
-**Front. Cell. Infect. Microbiol.** Apr. 2016 <http://dx.doi.org/10.3389%2Ffcimb.2016.00036> |
|
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-*Ws-2* Introgression in a Proportion of *Arabidopsis thaliana Col-0* Stock Seed Produces Specific Phenotypes and Highlights the Importance of Routine Genetic Verification |
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-**Plant Cell** Mar. 2016 <http://dx.doi.org/10.1105/tpc.16.00053> |
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-The population genetics of drug resistance evolution in natural populations of viral, bacterial and eukaryotic pathogens |
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-**Molecuar Ecology** Dec. 2015 <http://dx.doi.org/10.1111/mec.13474> |
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-Genetic characterization of highly pathogenic H5 influenza viruses from poultry in Taiwan, 2015 |
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-Trans-species polymorphism at antimicrobial innate immunity cathelicidin genes of Atlantic cod and related species |
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