git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ggtree@113924 bc3139a8-67e5-0310-9ffc-ced21a209358
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@@ -1,5 +1,7 @@ |
1 | 1 |
CHANGES IN VERSION 1.3.14 |
2 | 2 |
------------------------ |
3 |
+ o offset works in `align=FFALSE` with `annotation_image` function <2016-02-23, Tue> |
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+ + see https://github.com/GuangchuangYu/ggtree/issues/46 |
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3 | 5 |
o subview and inset now supports annotating with img files <2016-02-23, Tue> |
4 | 6 |
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5 | 7 |
CHANGES IN VERSION 1.3.13 |
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@@ -136,10 +136,6 @@ annotation_image <- function(tree_view, img_info, width=0.1, align=TRUE, linetyp |
136 | 136 |
x <- df[idx, "x"] |
137 | 137 |
y <- df[idx, "y"] |
138 | 138 |
|
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- EBImage <- "EBImage" |
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- require(EBImage, character.only = TRUE) |
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- readImage <- eval(parse(text="readImage")) |
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- |
|
143 | 139 |
images <- lapply(img_info[,2], readImage) |
144 | 140 |
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145 | 141 |
ARs <- sapply(images, getAR) |
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@@ -148,11 +144,11 @@ annotation_image <- function(tree_view, img_info, width=0.1, align=TRUE, linetyp |
148 | 144 |
if (align) { |
149 | 145 |
xmin <- max(df$x) + offset |
150 | 146 |
xmin <- rep(xmin, length(x)) |
151 |
- xmax <- xmin + width |
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152 | 147 |
} else { |
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- xmin <- x - width/2 |
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- xmax <- x + width/2 |
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+ xmin <- x - width/2 + offset |
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155 | 149 |
} |
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+ xmax <- xmin + width |
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+ |
|
156 | 152 |
ymin <- y - ARs * width/2 |
157 | 153 |
ymax <- y + ARs * width/2 |
158 | 154 |
image_layers <- lapply(1:length(xmin), function(i) { |
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@@ -30,10 +30,7 @@ subview <- function(mainview, subview, x, y, width=.1, height=.1) { |
30 | 30 |
} else if (is(subview, "grob")) { |
31 | 31 |
sv <- subview |
32 | 32 |
} else if (file.exists(subview)) { |
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- EBImage <- "EBImage" |
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- require(EBImage, character.only = TRUE) |
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- readImage <- eval(parse(text="readImage")) |
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- sv <- rasterGrob(readImage(subview)) |
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+ sv <- rasterGrob(readImage(subview)) |
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37 | 34 |
} else { |
38 | 35 |
stop("subview should be a ggplot or grob object, or an image file...") |
39 | 36 |
} |
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@@ -475,6 +475,9 @@ getCols <- function (n) { |
475 | 475 |
colorRampPalette(col3)(n) |
476 | 476 |
} |
477 | 477 |
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- |
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- |
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- |
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+readImage <- function(...) { |
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+ EBImage <- "EBImage" |
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+ require(EBImage, character.only = TRUE) |
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+ EBImage_readImage <- eval(parse(text="readImage")) |
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+ EBImage_readImage(...) |
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+} |