1. ggtree
  2. Commit 5c2227bd859bcfcde83eb6e4c8d6cdbb7c85b673
Browse code

tweets

guangchuang yu authored on 25/07/2017 10:14:02
Showing 22 changed files
docs/documentation/index.html
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 <li><a href="https://guangchuangyu.github.io/2015/12/use-emoji-font-in-r">use emoji font in R</a></li>
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-<li><a href="https://guangchuangyu.github.io/2016/02/tweets-of-ggtree">tweets of ggtree</a></li>
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-<li>Join the group chat on <a href="https://twitter.com/hashtag/ggtree"><i class="fa fa-twitter fa-lg"></i></a> and <a href="http://huati.weibo.com/k/ggtree"><i class="fa fa-weibo fa-lg"></i></a></li>
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-<p><i class="fa fa-hand-o-right"></i> Find out more on <a href="https://guangchuangyu.github.io/tags/ggtree/" class="uri">https://guangchuangyu.github.io/tags/ggtree/</a>.</p>
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docs/documentation/index.rmd
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 + [comic phylogenetic tree with ggtree and comicR](https://guangchuangyu.github.io/2015/09/comic-phylogenetic-tree-with-ggtree-and-comicr)
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docs/documentation/index.xml
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       <pubDate>Mon, 24 Jul 2017 00:11:02 +0100</pubDate>
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       <guid>https://guangchuangyu.github.io/ggtree/documentation/</guid>
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-      <description>Vignettes  ggtree Tree Data Import Tree Visualization Tree Annotation Tree Manipulation Advance Tree Annotation ggtree utilities Phylomoji    Blog posts  News and updates  viewing and annotating phylogenetic tree with ggtree ggtree in Bioconductor 3.1 BioC 3.1: NEWS of my BioC packages BioC 3.2: NEWS of my BioC packages News of ggtree BioC 3.3: NEWS of my BioC packages BioC 3.4: NEWS of my BioC packages ggtree paper published    Data manipulation  subsetting data in ggtree ggtree supports phylip tree format convert graphic object to tree object using treeio    Tree visualization  ggtree - updating a tree view an example of drawing beast tree using ggtree Phylogenetic trees in R using ggtree  The Molecular Ecologist    Tree annotation  label edge number in ggtree Edge coloring with user data subview Annotate a phylogenetic tree with insets ggtree annotate phylogenetic tree with local images embed images in ggplot2 via subview and annotate a phylogenetic tree with images using inset function identify method for ggtree facet_plot: a general solution to associate data with phylogenetic tree align genomic features with phylogenetic tree xlim_tree: set x axis limits for only Tree panel add layer to specific panel of facet_plot output    Tree manipulation  flip and rotate branches in ggtree    Application  ggtree for microbiome data ggtree for outbreak data ggtree version of plotTree reproducible logo generated by ggtree    Funny stuff  ggtree with funny fonts comic phylogenetic tree with ggtree and comicR use emoji font in R    User’s feedback  tweets of ggtree Join the group chat on  and    Find out more on https://guangchuangyu.</description>
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+      <description> Vignettes  ggtree Tree Data Import Tree Visualization Tree Annotation Tree Manipulation Advance Tree Annotation ggtree utilities Phylomoji    Blog posts  News and updates  viewing and annotating phylogenetic tree with ggtree ggtree in Bioconductor 3.1 BioC 3.1: NEWS of my BioC packages BioC 3.2: NEWS of my BioC packages News of ggtree BioC 3.3: NEWS of my BioC packages BioC 3.4: NEWS of my BioC packages ggtree paper published    Data manipulation  subsetting data in ggtree ggtree supports phylip tree format convert graphic object to tree object using treeio    Tree visualization  ggtree - updating a tree view an example of drawing beast tree using ggtree Phylogenetic trees in R using ggtree  The Molecular Ecologist    Tree annotation  label edge number in ggtree Edge coloring with user data subview Annotate a phylogenetic tree with insets ggtree annotate phylogenetic tree with local images embed images in ggplot2 via subview and annotate a phylogenetic tree with images using inset function identify method for ggtree facet_plot: a general solution to associate data with phylogenetic tree align genomic features with phylogenetic tree xlim_tree: set x axis limits for only Tree panel add layer to specific panel of facet_plot output    Tree manipulation  flip and rotate branches in ggtree    Application  ggtree for microbiome data ggtree for outbreak data ggtree version of plotTree reproducible logo generated by ggtree    Funny stuff  ggtree with funny fonts comic phylogenetic tree with ggtree and comicR use emoji font in R     Slides  Generating publication quality figures using R &amp;amp; ggplot2 ggtree for visualization and annotation of phylogenetic trees    Video  interactive clade highlighting interactive rotating clades interactive clade labeling    Workflow  recreate a tree from a publication (Bloom et al, Science 2010)   </description>
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docs/faq/index.html
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-<h2><i class="fa fa-twitter"></i> Tweets</h2>
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-Adaptive radiation of <a href="https://twitter.com/hashtag/Darwin?src=hash">#Darwin</a>'s finches showing <a href="https://twitter.com/hashtag/genotypic?src=hash">#genotypic</a> and <a href="https://twitter.com/hashtag/morphometric?src=hash">#morphometric</a> evolution. Good excuse to practice with <a href="https://twitter.com/hashtag/ggtree?src=hash">#ggtree</a> <a href="https://twitter.com/guangchuangyu"><span class="citation">@guangchuangyu</span></a> <a href="https://t.co/JJZ3Yje58s">pic.twitter.com/JJZ3Yje58s</a>
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-— Will Harvey (<span class="citation">@_wharvey</span>) <a href="https://twitter.com/_wharvey/status/831952966701678592">February 15, 2017</a>
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-am quite liking <a href="https://twitter.com/hashtag/ggtree?src=hash">#ggtree</a> <a href="https://twitter.com/hashtag/rstats?src=hash">#rstats</a> <a href="https://twitter.com/hashtag/ggplot?src=hash">#ggplot</a> <a href="https://t.co/hvywS2z4ps">pic.twitter.com/hvywS2z4ps</a>
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-Capital G, a reproducible logo produced by <a href="https://twitter.com/hashtag/ggtree?src=hash">#ggtree</a> <a href="https://twitter.com/hashtag/dataviz?src=hash">#dataviz</a> <a href="https://twitter.com/hashtag/rstats?src=hash">#rstats</a> <a href="https://twitter.com/hashtag/ggplot2?src=hash">#ggplot2</a> <a href="https://t.co/lJDcgfxAEh">pic.twitter.com/lJDcgfxAEh</a>
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-associate tree with different type of data by <a href="https://twitter.com/hashtag/ggtree?src=hash">#ggtree</a> <a href="https://t.co/6w755VWytZ">https://t.co/6w755VWytZ</a> <a href="https://t.co/K8WViEi13E">pic.twitter.com/K8WViEi13E</a>
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-— Guangchuang Yu (<span class="citation">@guangchuangyu</span>) <a href="https://twitter.com/guangchuangyu/status/773359054924095488">September 7, 2016</a>
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-how about using emoji to label host species in phylogenetic tree? <a href="https://twitter.com/hashtag/rstats?src=hash">#rstats</a> <a href="https://twitter.com/hashtag/visualization?src=hash">#visualization</a> <a href="https://twitter.com/hashtag/ggtree?src=hash">#ggtree</a> <a href="https://twitter.com/hashtag/emojifont?src=hash">#emojifont</a> <a href="https://t.co/MRKQvNNAUh">pic.twitter.com/MRKQvNNAUh</a>
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-— Guangchuang Yu (<span class="citation">@guangchuangyu</span>) <a href="https://twitter.com/guangchuangyu/status/708160510441566211">March 11, 2016</a>
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-— Guangchuang Yu (<span class="citation">@guangchuangyu</span>) <a href="https://twitter.com/guangchuangyu/status/667337429704011777">November 19, 2015</a>
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-multiple sequence alignment with <a href="https://twitter.com/hashtag/phylogenetic?src=hash">#phylogenetic</a> tree via <a href="https://twitter.com/hashtag/rstats?src=hash">#rstats</a> pkg <a href="https://twitter.com/hashtag/ggtree?src=hash">#ggtree</a>. <a href="http://t.co/6CY57dLdeb">pic.twitter.com/6CY57dLdeb</a>
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-— Guangchuang Yu (<span class="citation">@guangchuangyu</span>) <a href="https://twitter.com/guangchuangyu/status/601676060254605312">May 22, 2015</a>
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-— Guangchuang Yu (<span class="citation">@guangchuangyu</span>) <a href="https://twitter.com/guangchuangyu/status/599078224576942080">May 15, 2015</a>
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 ![](https://guangchuangyu.github.io/featured_img/ggtree/2017-01-21-115646_969x444_scrot.png)
51 39
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+<http://dx.doi.org/10.1128/AEM.02307-16>
41 
+
52 42 
 ----
53 43
54 
-+ <http://dx.doi.org/10.3389%2Ffcimb.2016.00036>
55 44
56 45 
 ![](https://guangchuangyu.github.io/featured_img/ggtree/2016_fcimb-06-00036-g003.jpg)
57 46
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+<http://dx.doi.org/10.3389%2Ffcimb.2016.00036>
48 
+
58 49 
 ----
59 50
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-+ <http://dx.doi.org/10.1016/j.meegid.2015.12.006>
61 51
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 ![](https://guangchuangyu.github.io/featured_img/ggtree/2015_peiyu_1-s2.0-S1567134815300721-gr1.jpg)
63 53
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-
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-## <i class="fa fa-twitter"></i> Tweets
66 
-
67 
-<blockquote class="twitter-tweet" data-lang="en"><p lang="en" dir="ltr">Adaptive radiation of <a href="https://twitter.com/hashtag/Darwin?src=hash">#Darwin</a>&#39;s finches showing <a href="https://twitter.com/hashtag/genotypic?src=hash">#genotypic</a> and <a href="https://twitter.com/hashtag/morphometric?src=hash">#morphometric</a> evolution. Good excuse to practice with <a href="https://twitter.com/hashtag/ggtree?src=hash">#ggtree</a> <a href="https://twitter.com/guangchuangyu">@guangchuangyu</a> <a href="https://t.co/JJZ3Yje58s">pic.twitter.com/JJZ3Yje58s</a></p>&mdash; Will Harvey (@_wharvey) <a href="https://twitter.com/_wharvey/status/831952966701678592">February 15, 2017</a></blockquote>
68 
-
69 
-<blockquote class="twitter-tweet" data-lang="en"><p lang="en" dir="ltr">am quite liking <a href="https://twitter.com/hashtag/ggtree?src=hash">#ggtree</a> <a href="https://twitter.com/hashtag/rstats?src=hash">#rstats</a> <a href="https://twitter.com/hashtag/ggplot?src=hash">#ggplot</a> <a href="https://t.co/hvywS2z4ps">pic.twitter.com/hvywS2z4ps</a></p>&mdash; Nicholas E Ilott (@IlottNick) <a href="https://twitter.com/IlottNick/status/788751417746059264">October 19, 2016</a></blockquote>
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-
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-<blockquote class="twitter-tweet" data-lang="en"><p lang="es" dir="ltr">Capital G, a reproducible logo produced by <a href="https://twitter.com/hashtag/ggtree?src=hash">#ggtree</a> <a href="https://twitter.com/hashtag/dataviz?src=hash">#dataviz</a> <a href="https://twitter.com/hashtag/rstats?src=hash">#rstats</a> <a href="https://twitter.com/hashtag/ggplot2?src=hash">#ggplot2</a> <a href="https://t.co/lJDcgfxAEh">pic.twitter.com/lJDcgfxAEh</a></p>&mdash; Guangchuang Yu (@guangchuangyu) <a href="https://twitter.com/guangchuangyu/status/786429360823644160">October 13, 2016</a></blockquote>
72 
-
73 
-<blockquote class="twitter-tweet" data-lang="en"><p lang="en" dir="ltr">associate tree with different type of data by <a href="https://twitter.com/hashtag/ggtree?src=hash">#ggtree</a> <a href="https://t.co/6w755VWytZ">https://t.co/6w755VWytZ</a> <a href="https://t.co/K8WViEi13E">pic.twitter.com/K8WViEi13E</a></p>&mdash; Guangchuang Yu (@guangchuangyu) <a href="https://twitter.com/guangchuangyu/status/773359054924095488">September 7, 2016</a></blockquote>
74 
-
75 
-<blockquote class="twitter-tweet" data-lang="en"><p lang="en" dir="ltr">how about using emoji to label host species in phylogenetic tree? <a href="https://twitter.com/hashtag/rstats?src=hash">#rstats</a> <a href="https://twitter.com/hashtag/visualization?src=hash">#visualization</a> <a href="https://twitter.com/hashtag/ggtree?src=hash">#ggtree</a> <a href="https://twitter.com/hashtag/emojifont?src=hash">#emojifont</a> <a href="https://t.co/MRKQvNNAUh">pic.twitter.com/MRKQvNNAUh</a></p>&mdash; Guangchuang Yu (@guangchuangyu) <a href="https://twitter.com/guangchuangyu/status/708160510441566211">March 11, 2016</a></blockquote>
76 
-
77 
-<blockquote class="twitter-tweet" data-lang="en"><p lang="en" dir="ltr"><a href="https://twitter.com/hashtag/phylomoji?src=hash">#phylomoji</a> with <a href="https://twitter.com/hashtag/ggtree?src=hash">#ggtree</a> <a href="https://t.co/yMUtm1jYF9">pic.twitter.com/yMUtm1jYF9</a></p>&mdash; Guangchuang Yu (@guangchuangyu) <a href="https://twitter.com/guangchuangyu/status/667337429704011777">November 19, 2015</a></blockquote>
78 
-
79 
-<blockquote class="twitter-tweet" data-lang="en"><p lang="en" dir="ltr">multiple sequence alignment with <a href="https://twitter.com/hashtag/phylogenetic?src=hash">#phylogenetic</a> tree via <a href="https://twitter.com/hashtag/rstats?src=hash">#rstats</a> pkg <a href="https://twitter.com/hashtag/ggtree?src=hash">#ggtree</a>. <a href="http://t.co/6CY57dLdeb">pic.twitter.com/6CY57dLdeb</a></p>&mdash; Guangchuang Yu (@guangchuangyu) <a href="https://twitter.com/guangchuangyu/status/601676060254605312">May 22, 2015</a></blockquote>
80 
-
81 
-<blockquote class="twitter-tweet" data-lang="en"><p lang="en" dir="ltr"><a href="https://twitter.com/hashtag/comictree?src=hash">#comictree</a> via <a href="https://twitter.com/hashtag/ggtree?src=hash">#ggtree</a> and <a href="https://twitter.com/hashtag/comicR?src=hash">#comicR</a> in <a href="https://twitter.com/hashtag/rstats?src=hash">#rstats</a> <a href="http://t.co/zwCuOQ49bq">pic.twitter.com/zwCuOQ49bq</a></p>&mdash; Guangchuang Yu (@guangchuangyu) <a href="https://twitter.com/guangchuangyu/status/599078224576942080">May 15, 2015</a></blockquote>
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-
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-<script async src="//platform.twitter.com/widgets.js" charset="utf-8"></script>
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+<http://dx.doi.org/10.1016/j.meegid.2015.12.006>
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       <pubDate>Mon, 24 Jul 2017 00:11:02 +0100</pubDate>
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       <guid>https://guangchuangyu.github.io/ggtree/gallery/</guid>
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-      <description>Journal Articles  http://dx.doi.org/10.3389/fmicb.2017.00543    https://doi.org/10.3389/fmicb.2017.00456    http://dx.doi.org/10.1186/s40168-017-0232-3    http://dx.doi.org/10.1111/2041-210X.12628    http://dx.doi.org/10.1128/AEM.02307-16    http://dx.doi.org/10.3389%2Ffcimb.2016.00036    http://dx.doi.org/10.1016/j.meegid.2015.12.006     Tweets Adaptive radiation of #Darwin&#39;s finches showing #genotypic and #morphometric evolution. Good excuse to practice with #ggtree @guangchuangyu pic.twitter.com/JJZ3Yje58s — Will Harvey (@_wharvey) February 15, 2017  am quite liking #ggtree #rstats #ggplot pic.</description>
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+      <description>http://dx.doi.org/10.3389/fmicb.2017.00543
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+ https://doi.org/10.3389/fmicb.2017.00456
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+ http://dx.doi.org/10.1186/s40168-017-0232-3
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+http://dx.doi.org/10.1111/2041-210X.12628
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+ http://dx.doi.org/10.1128/AEM.02307-16
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+ http://dx.doi.org/10.3389%2Ffcimb.2016.00036
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+ http://dx.doi.org/10.1016/j.meegid.2015.12.006</description>
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 <div id="citation" class="section level2">
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 <h2><i class="fa fa-book"></i> Citation</h2>
337 355 
 <p>Please cite the following article when using <code>ggtree</code>:</p>
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-<p><a href="http://dx.doi.org/10.1111/2041-210X.12628"><img src="https://img.shields.io/badge/doi-10.1111/2041--210X.12628-blue.svg?style=flat" /></a> <a href="https://www.altmetric.com/details/10533079"><img src="https://img.shields.io/badge/Altmetric-351-blue.svg?style=flat" /></a> <a href="https://scholar.google.com.hk/scholar?oi=bibs&amp;hl=en&amp;cites=7268358477862164627"><img src="https://img.shields.io/badge/cited%20by-28-blue.svg?style=flat" alt="citation" /></a></p>
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+<p><a href="http://dx.doi.org/10.1111/2041-210X.12628"><img src="https://img.shields.io/badge/doi-10.1111/2041--210X.12628-blue.svg?style=flat" /></a> <a href="https://www.altmetric.com/details/10533079"><img src="https://img.shields.io/badge/Altmetric-351-blue.svg?style=flat" /></a> <a href="https://scholar.google.com.hk/scholar?oi=bibs&amp;hl=en&amp;cites=7268358477862164627"><img src="https://img.shields.io/badge/cited%20by-29-blue.svg?style=flat" alt="citation" /></a></p>
339 357 
 <p><strong>G Yu</strong>, DK Smith, H Zhu, Y Guan, TTY Lam<sup>*</sup>. ggtree: an R package for visualization and annotation of phylogenetic trees with their covariates and other associated data. <strong><em>Methods in Ecology and Evolution</em></strong>. 2017, 8(1):28-36.</p>
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       <pubDate>Mon, 24 Jul 2017 00:11:02 +0100</pubDate>
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       <guid>https://guangchuangyu.github.io/ggtree/documentation/</guid>
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-      <description>Vignettes  ggtree Tree Data Import Tree Visualization Tree Annotation Tree Manipulation Advance Tree Annotation ggtree utilities Phylomoji    Blog posts  News and updates  viewing and annotating phylogenetic tree with ggtree ggtree in Bioconductor 3.1 BioC 3.1: NEWS of my BioC packages BioC 3.2: NEWS of my BioC packages News of ggtree BioC 3.3: NEWS of my BioC packages BioC 3.4: NEWS of my BioC packages ggtree paper published    Data manipulation  subsetting data in ggtree ggtree supports phylip tree format convert graphic object to tree object using treeio    Tree visualization  ggtree - updating a tree view an example of drawing beast tree using ggtree Phylogenetic trees in R using ggtree  The Molecular Ecologist    Tree annotation  label edge number in ggtree Edge coloring with user data subview Annotate a phylogenetic tree with insets ggtree annotate phylogenetic tree with local images embed images in ggplot2 via subview and annotate a phylogenetic tree with images using inset function identify method for ggtree facet_plot: a general solution to associate data with phylogenetic tree align genomic features with phylogenetic tree xlim_tree: set x axis limits for only Tree panel add layer to specific panel of facet_plot output    Tree manipulation  flip and rotate branches in ggtree    Application  ggtree for microbiome data ggtree for outbreak data ggtree version of plotTree reproducible logo generated by ggtree    Funny stuff  ggtree with funny fonts comic phylogenetic tree with ggtree and comicR use emoji font in R    User’s feedback  tweets of ggtree Join the group chat on  and    Find out more on https://guangchuangyu.</description>
31 
+      <description> Vignettes  ggtree Tree Data Import Tree Visualization Tree Annotation Tree Manipulation Advance Tree Annotation ggtree utilities Phylomoji    Blog posts  News and updates  viewing and annotating phylogenetic tree with ggtree ggtree in Bioconductor 3.1 BioC 3.1: NEWS of my BioC packages BioC 3.2: NEWS of my BioC packages News of ggtree BioC 3.3: NEWS of my BioC packages BioC 3.4: NEWS of my BioC packages ggtree paper published    Data manipulation  subsetting data in ggtree ggtree supports phylip tree format convert graphic object to tree object using treeio    Tree visualization  ggtree - updating a tree view an example of drawing beast tree using ggtree Phylogenetic trees in R using ggtree  The Molecular Ecologist    Tree annotation  label edge number in ggtree Edge coloring with user data subview Annotate a phylogenetic tree with insets ggtree annotate phylogenetic tree with local images embed images in ggplot2 via subview and annotate a phylogenetic tree with images using inset function identify method for ggtree facet_plot: a general solution to associate data with phylogenetic tree align genomic features with phylogenetic tree xlim_tree: set x axis limits for only Tree panel add layer to specific panel of facet_plot output    Tree manipulation  flip and rotate branches in ggtree    Application  ggtree for microbiome data ggtree for outbreak data ggtree version of plotTree reproducible logo generated by ggtree    Funny stuff  ggtree with funny fonts comic phylogenetic tree with ggtree and comicR use emoji font in R     Slides  Generating publication quality figures using R &amp;amp; ggplot2 ggtree for visualization and annotation of phylogenetic trees    Video  interactive clade highlighting interactive rotating clades interactive clade labeling    Workflow  recreate a tree from a publication (Bloom et al, Science 2010)   </description>
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       <pubDate>Mon, 24 Jul 2017 00:11:02 +0100</pubDate>
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       <guid>https://guangchuangyu.github.io/ggtree/gallery/</guid>
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-      <description>Journal Articles  http://dx.doi.org/10.3389/fmicb.2017.00543    https://doi.org/10.3389/fmicb.2017.00456    http://dx.doi.org/10.1186/s40168-017-0232-3    http://dx.doi.org/10.1111/2041-210X.12628    http://dx.doi.org/10.1128/AEM.02307-16    http://dx.doi.org/10.3389%2Ffcimb.2016.00036    http://dx.doi.org/10.1016/j.meegid.2015.12.006     Tweets Adaptive radiation of #Darwin&#39;s finches showing #genotypic and #morphometric evolution. Good excuse to practice with #ggtree @guangchuangyu pic.twitter.com/JJZ3Yje58s — Will Harvey (@_wharvey) February 15, 2017  am quite liking #ggtree #rstats #ggplot pic.</description>
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+      <description>http://dx.doi.org/10.3389/fmicb.2017.00543
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+ https://doi.org/10.3389/fmicb.2017.00456
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+ http://dx.doi.org/10.1186/s40168-017-0232-3
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+http://dx.doi.org/10.1111/2041-210X.12628
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+ http://dx.doi.org/10.1128/AEM.02307-16
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+ http://dx.doi.org/10.3389%2Ffcimb.2016.00036
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+ http://dx.doi.org/10.1016/j.meegid.2015.12.006</description>
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+    </item>
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+    <item>
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+      <title>Tweets</title>
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+      <link>https://guangchuangyu.github.io/ggtree/tweets/</link>
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+      <pubDate>Tue, 25 Jul 2017 00:11:02 +0100</pubDate>
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+
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+      <guid>https://guangchuangyu.github.io/ggtree/tweets/</guid>
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+      <description>Leave me a message on
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+Second post with an update on how to add tip shapes and colours to ggtree https://t.co/ezWF4TVQst
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+&amp;mdash; Anthony Underwood (@bioinformAnt) July 7, 2017 Yes and no. No manual assignment =&amp;gt; randomly assigned colours. Even with manual spec ggtree is still much quicker than making fig by hand 😀
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+&amp;mdash; Anthony Underwood (@bioinformAnt) July 7, 2017 I&amp;#39;d use ggtree from Bioconductor as you can really tailor all the fonts etc.</description>
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+    <loc>https://guangchuangyu.github.io/ggtree/tweets/</loc>
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+    <lastmod>2017-07-25T00:11:02+01:00</lastmod>
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+    <meta http-equiv="X-UA-Compatible" content="IE=10" />
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+    <title>Tweets - ggtree - Guangchuang Yu</title>
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+    <meta name="apple-mobile-web-app-title" content="ggtree - Guangchuang Yu">
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+    <meta name="apple-mobile-web-app-capable" content="yes">
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+    <meta name="apple-mobile-web-app-status-bar-style" content="black-translucent">
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+
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+    <link rel="shortcut icon" type="image/x-icon" href="https://guangchuangyu.github.io/ggtree/images/favicon.ico">
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+    <link rel="icon" type="image/x-icon" href="https://guangchuangyu.github.io/ggtree/images/favicon.ico">
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+    <style>
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+      @font-face {
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+        font-family: 'Icon';
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+        src: url('https://guangchuangyu.github.io/ggtree/fonts/icon.eot');
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+        src: url('https://guangchuangyu.github.io/ggtree/fonts/icon.eot')
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+               format('embedded-opentype'),
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+             url('https://guangchuangyu.github.io/ggtree/fonts/icon.woff')
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+               format('woff'),
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+             url('https://guangchuangyu.github.io/ggtree/fonts/icon.ttf')
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+               format('truetype'),
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+             url('https://guangchuangyu.github.io/ggtree/fonts/icon.svg')
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+               format('svg');
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+        font-weight: normal;
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+        font-style: normal;
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+      }
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+    </style>
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+    <link rel="stylesheet" href="https://guangchuangyu.github.io/ggtree/stylesheets/application.css">
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+    <link rel="stylesheet" href="https://guangchuangyu.github.io/ggtree/stylesheets/temporary.css">
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+    <link rel="stylesheet" href="https://guangchuangyu.github.io/ggtree/stylesheets/palettes.css">
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+        font-family: 'Ubuntu Mono', 'Courier New', 'Courier', monospace;
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+      }
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+    </style>
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+  <div class="bar default">
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+    <div class="button button-menu" role="button" aria-label="Menu">
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+        <strong>ggtree - Guangchuang Yu </strong>
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+<a  title="ggtree" href="../">
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+	ggtree
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+        <span class="section">The author</span>
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+<div style="width:250px;margin:auto;"><script type="text/javascript" src="//rf.revolvermaps.com/0/0/7.js?i=5qpvv5zz7fp&amp;m=0&amp;c=ff0000&amp;cr1=ffffff&amp;sx=0" async="async"></script></div>
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+	<article class="article">
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+			<h1>Tweets </h1>
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+
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+			<p><link rel="stylesheet" href="https://guangchuangyu.github.io/css/font-awesome.min.css"></p>
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+<p><font size="4"><strong>Leave me a message on <a href="https://twitter.com/hashtag/ggtree"><i class="fa fa-twitter fa-lg"></i></a></strong></font></p>
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+<p><blockquote class="twitter-tweet"><p lang="en" dir="ltr">Second post with an update on how to add tip shapes and colours to ggtree <a href="https://t.co/ezWF4TVQst">https://t.co/ezWF4TVQst</a></p>&mdash; Anthony Underwood (@bioinformAnt) <a href="https://twitter.com/bioinformAnt/status/883301626022375424">July 7, 2017</a></blockquote>
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+<script async src="//platform.twitter.com/widgets.js" charset="utf-8"></script><blockquote class="twitter-tweet"><p lang="en" dir="ltr">Yes and no. No manual assignment =&gt; randomly assigned colours. Even with manual spec ggtree is still much quicker than making fig by hand 😀</p>&mdash; Anthony Underwood (@bioinformAnt) <a href="https://twitter.com/bioinformAnt/status/883246854695256064">July 7, 2017</a></blockquote>
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+<script async src="//platform.twitter.com/widgets.js" charset="utf-8"></script><blockquote class="twitter-tweet"><p lang="en" dir="ltr">I&#39;d use ggtree from Bioconductor as you can really tailor all the fonts etc..<a href="https://t.co/NAcbFswGYB">https://t.co/NAcbFswGYB</a></p>&mdash; Susan Holmes (@SherlockpHolmes) <a href="https://twitter.com/SherlockpHolmes/status/877576023109390336">June 21, 2017</a></blockquote>
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+<script async src="//platform.twitter.com/widgets.js" charset="utf-8"></script><blockquote class="twitter-tweet"><p lang="en" dir="ltr">How phylogenies and associated heatmaps can be drawn using the <a href="https://twitter.com/hashtag/ggtree?src=hash">#ggtree</a> package in <a href="https://twitter.com/hashtag/R?src=hash">#R</a> <a href="https://t.co/rlBvGxUEBO">https://t.co/rlBvGxUEBO</a></p>&mdash; L. Rosaleny (@lorelai66) <a href="https://twitter.com/lorelai66/status/875594411584782337">June 16, 2017</a></blockquote>
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+<script async src="//platform.twitter.com/widgets.js" charset="utf-8"></script><blockquote class="twitter-tweet"><p lang="en" dir="ltr">I think most use a combination of icandy/itol/phandango. I prefer ggtree, which you can code and customise in R.</p>&mdash; Mat Beale (@typeMAT12) <a href="https://twitter.com/typeMAT12/status/871775262152810496">June 5, 2017</a></blockquote>
351 
+<script async src="//platform.twitter.com/widgets.js" charset="utf-8"></script><blockquote class="twitter-tweet"><p lang="en" dir="ltr">You like emijo &amp; <a href="https://twitter.com/hashtag/RStats?src=hash">#RStats</a> ? Then check this out! phylomoji with ggtree and emojifont : <a href="https://t.co/9BcZhjfkXm">https://t.co/9BcZhjfkXm</a> <a href="https://t.co/pP1aMPRozS">pic.twitter.com/pP1aMPRozS</a></p>&mdash; thinkR (@thinkR_fr) <a href="https://twitter.com/thinkR_fr/status/867408666852511744">May 24, 2017</a></blockquote>
352 
+<script async src="//platform.twitter.com/widgets.js" charset="utf-8"></script><blockquote class="twitter-tweet"><p lang="en" dir="ltr">as someone who doesn&#39;t build a lot of trees, but does a lot of <a href="https://twitter.com/hashtag/Rstats?src=hash">#Rstats</a> —<a href="https://twitter.com/hashtag/ggtree?src=hash">#ggtree</a> is SO GREAT <a href="https://t.co/ABe3TsIVPR">https://t.co/ABe3TsIVPR</a></p>&mdash; Sean Leonard (@spleonard1) <a href="https://twitter.com/spleonard1/status/857665638600507393">April 27, 2017</a></blockquote>
353 
+<script async src="//platform.twitter.com/widgets.js" charset="utf-8"></script><blockquote class="twitter-tweet"><p lang="en" dir="ltr"><a href="https://twitter.com/guangchuangyu">@guangchuangyu</a> by the way our new paper used ggtree! Thanks for your hard work! <a href="https://t.co/mXD6E0Ddt0">https://t.co/mXD6E0Ddt0</a></p>&mdash; Justin Silverman (@inschool4life) <a href="https://twitter.com/inschool4life/status/840181267542994944">March 10, 2017</a></blockquote>
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+<script async src="//platform.twitter.com/widgets.js" charset="utf-8"></script><blockquote class="twitter-tweet"><p lang="en" dir="ltr">I cannot get over how beautiful the graphics produced by GGTREE are. Cannot wait to use it! <a href="https://t.co/8qFO9yKLlp">https://t.co/8qFO9yKLlp</a></p>&mdash; Mark D. Scherz (@MarkScherz) <a href="https://twitter.com/MarkScherz/status/839831849736232962">March 9, 2017</a></blockquote>
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+<script async src="//platform.twitter.com/widgets.js" charset="utf-8"></script><blockquote class="twitter-tweet"><p lang="en" dir="ltr">Plot beautiful phylogenies and illustrate them with <a href="https://twitter.com/PhyloPic">@PhyloPic</a> images, with ggtree <a href="https://t.co/i9lsp5W6mL">https://t.co/i9lsp5W6mL</a> <a href="https://t.co/mA8hygAgSG">pic.twitter.com/mA8hygAgSG</a></p>&mdash; Molecular Ecologist (@molecologist) <a href="https://twitter.com/molecologist/status/830023569887391744">February 10, 2017</a></blockquote>
356 
+<script async src="//platform.twitter.com/widgets.js" charset="utf-8"></script><blockquote class="twitter-tweet"><p lang="en" dir="ltr">OMG SO USEFUL! &quot;Phylogenetic trees in R using ggtree&quot; <a href="https://t.co/Yr8HNdWXV0">https://t.co/Yr8HNdWXV0</a></p>&mdash; Stephen Taerum (@BrahStevovo) <a href="https://twitter.com/BrahStevovo/status/829398997735313408">February 8, 2017</a></blockquote>
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+<script async src="//platform.twitter.com/widgets.js" charset="utf-8"></script><blockquote class="twitter-tweet"><p lang="en" dir="ltr">I like ggtree to plot phylogenetic trees and annotate them. And I haven&#39;t found any other tools as customizable as ggtree</p>&mdash; Le Nématode (@LeNematode) <a href="https://twitter.com/LeNematode/status/824264788456984576">January 25, 2017</a></blockquote>
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+<script async src="//platform.twitter.com/widgets.js" charset="utf-8"></script><blockquote class="twitter-tweet"><p lang="en" dir="ltr">The R <a href="https://twitter.com/Bioconductor">@Bioconductor</a> package <a href="https://twitter.com/hashtag/ggtree?src=hash">#ggtree</a> is now published in <a href="https://twitter.com/MethodsEcolEvol">@MethodsEcolEvol</a> <a href="https://t.co/6fvSRQo2CC">https://t.co/6fvSRQo2CC</a> <a href="https://twitter.com/hashtag/evomics2017?src=hash">#evomics2017</a> <a href="https://t.co/Dwq1DD84A2">pic.twitter.com/Dwq1DD84A2</a></p>&mdash; Elin Videvall (@ElinVidevall) <a href="https://twitter.com/ElinVidevall/status/822383911258890242">January 20, 2017</a></blockquote>
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+<script async src="//platform.twitter.com/widgets.js" charset="utf-8"></script><blockquote class="twitter-tweet"><p lang="en" dir="ltr">Assortative tip coloring by text string using <a href="https://twitter.com/hashtag/ggtree?src=hash">#ggtree</a> by <a href="https://twitter.com/guangchuangyu">@guangchuangyu</a> <a href="https://t.co/rocvFK3OOS">https://t.co/rocvFK3OOS</a> <a href="https://twitter.com/hashtag/phylogenetics?src=hash">#phylogenetics</a> <a href="https://t.co/mEMkhZ2fVk">pic.twitter.com/mEMkhZ2fVk</a></p>&mdash; Guanyang Zhang (@GYZhang2) <a href="https://twitter.com/GYZhang2/status/811666431452450816">December 21, 2016</a></blockquote>
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+<script async src="//platform.twitter.com/widgets.js" charset="utf-8"></script><blockquote class="twitter-tweet"><p lang="en" dir="ltr">Featured this week: ggtree, an R package for visualization &amp; annotation of phylogenetic trees. Like it? Vote it up! <a href="https://t.co/laxtuRQDGB">https://t.co/laxtuRQDGB</a> <a href="https://t.co/zDvEBysWSQ">pic.twitter.com/zDvEBysWSQ</a></p>&mdash; LabWorm (@TheLabWorm) <a href="https://twitter.com/TheLabWorm/status/811661275889549312">December 21, 2016</a></blockquote>
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+<script async src="//platform.twitter.com/widgets.js" charset="utf-8"></script><blockquote class="twitter-tweet"><p lang="en" dir="ltr">+1 for ggtree, can make some very pretty figures.</p>&mdash; Will Allen (@wl_allen) <a href="https://twitter.com/wl_allen/status/797041236867686400">November 11, 2016</a></blockquote>
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+<script async src="//platform.twitter.com/widgets.js" charset="utf-8"></script><blockquote class="twitter-tweet"><p lang="en" dir="ltr">I&#39;m worried by how excited I am about having a whole 8 hour flight to work on some <a href="https://twitter.com/hashtag/rstats?src=hash">#rstats</a>. Going to teach myself ggtree first...</p>&mdash; Natalie Cooper (@nhcooper123) <a href="https://twitter.com/nhcooper123/status/797037016403820546">November 11, 2016</a></blockquote>
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+<script async src="//platform.twitter.com/widgets.js" charset="utf-8"></script><blockquote class="twitter-tweet"><p lang="en" dir="ltr">I use ggtree in R, which uses ggplot2 language. Easy to edit and produces nice figures</p>&mdash; James Doonan (@clydeandforth1) <a href="https://twitter.com/clydeandforth1/status/794278716859879424">November 3, 2016</a></blockquote>
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+<script async src="//platform.twitter.com/widgets.js" charset="utf-8"></script><blockquote class="twitter-tweet"><p lang="en" dir="ltr">Adaptive radiation of <a href="https://twitter.com/hashtag/Darwin?src=hash">#Darwin</a>&#39;s finches showing <a href="https://twitter.com/hashtag/genotypic?src=hash">#genotypic</a> and <a href="https://twitter.com/hashtag/morphometric?src=hash">#morphometric</a> evolution. Good excuse to practice with <a href="https://twitter.com/hashtag/ggtree?src=hash">#ggtree</a> <a href="https://twitter.com/guangchuangyu">@guangchuangyu</a> <a href="https://t.co/JJZ3Yje58s">pic.twitter.com/JJZ3Yje58s</a></p>&mdash; Will Harvey (@_wharvey) <a href="https://twitter.com/_wharvey/status/831952966701678592">February 15, 2017</a></blockquote>
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+<script async src="//platform.twitter.com/widgets.js" charset="utf-8"></script><blockquote class="twitter-tweet"><p lang="en" dir="ltr">am quite liking <a href="https://twitter.com/hashtag/ggtree?src=hash">#ggtree</a> <a href="https://twitter.com/hashtag/rstats?src=hash">#rstats</a> <a href="https://twitter.com/hashtag/ggplot?src=hash">#ggplot</a> <a href="https://t.co/hvywS2z4ps">pic.twitter.com/hvywS2z4ps</a></p>&mdash; Nicholas E Ilott (@IlottNick) <a href="https://twitter.com/IlottNick/status/788751417746059264">October 19, 2016</a></blockquote>
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+<script async src="//platform.twitter.com/widgets.js" charset="utf-8"></script><blockquote class="twitter-tweet"><p lang="en" dir="ltr">Treespace visualization of a heuristic best tree search in <a href="https://twitter.com/hashtag/R?src=hash">#R</a> package <a href="https://twitter.com/hashtag/ggtree?src=hash">#ggtree</a> <a href="https://twitter.com/hashtag/phylogenetics?src=hash">#phylogenetics</a> <a href="https://t.co/hnSJpIABql">pic.twitter.com/hnSJpIABql</a></p>&mdash; Alex DamiánSerrano ⑂ (@antropoteuthis) <a href="https://twitter.com/antropoteuthis/status/693123105707986944">January 29, 2016</a></blockquote>
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+<script async src="//platform.twitter.com/widgets.js" charset="utf-8"></script><blockquote class="twitter-tweet"><p lang="en" dir="ltr"><a href="https://twitter.com/guangchuangyu">@guangchuangyu</a> Updated to latest <a href="https://twitter.com/hashtag/ggtree?src=hash">#ggtree</a> and <a href="https://twitter.com/hashtag/ggplot2?src=hash">#ggplot2</a> and very impressed! Any ideas on using geom_label with tip labels to add box/fill?</p>&mdash; Jo Williams-Newkirk (@ajwnewkirk) <a href="https://twitter.com/ajwnewkirk/status/691762302492790788">January 25, 2016</a></blockquote>
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+<script async src="//platform.twitter.com/widgets.js" charset="utf-8"></script><blockquote class="twitter-tweet"><p lang="en" dir="ltr">ggtree looks really good! <a href="https://twitter.com/hashtag/rstats?src=hash">#rstats</a><a href="https://t.co/7rtexYV3I5">https://t.co/7rtexYV3I5</a></p>&mdash; Paul Staab (@paulstaab) <a href="https://twitter.com/paulstaab/status/687933344219312128">January 15, 2016</a></blockquote>
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+<script async src="//platform.twitter.com/widgets.js" charset="utf-8"></script><blockquote class="twitter-tweet"><p lang="en" dir="ltr">If you’re not using ggtree by <a href="https://twitter.com/guangchuangyu">@guangchuangyu</a> for your trees in R then you should be! <a href="https://twitter.com/hashtag/rstats?src=hash">#rstats</a> <a href="https://twitter.com/hashtag/bioinformatics?src=hash">#bioinformatics</a><a href="https://t.co/Z8HdLeyiIg">https://t.co/Z8HdLeyiIg</a></p>&mdash; Matt Workentine (@mworkentine) <a href="https://twitter.com/mworkentine/status/684411780412526592">January 5, 2016</a></blockquote>
370 
+<script async src="//platform.twitter.com/widgets.js" charset="utf-8"></script><blockquote class="twitter-tweet"><p lang="en" dir="ltr"><a href="https://twitter.com/guangchuangyu">@guangchuangyu</a> <a href="https://twitter.com/hashtag/ggtree?src=hash">#ggtree</a> has actually changed my life! it is <a href="https://twitter.com/hashtag/awesome?src=hash">#awesome</a>! <a href="https://twitter.com/hashtag/RePlottingEveryTreeFigureEver?src=hash">#RePlottingEveryTreeFigureEver</a> <a href="https://twitter.com/hashtag/ggplot2?src=hash">#ggplot2</a></p>&mdash; Peter Cowman (@pete_cowman) <a href="https://twitter.com/pete_cowman/status/665188011047563268">November 13, 2015</a></blockquote>
371 
+<script async src="//platform.twitter.com/widgets.js" charset="utf-8"></script><blockquote class="twitter-tweet"><p lang="en" dir="ltr">I continue to be amazed by the speed and quality of support <a href="https://twitter.com/guangchuangyu">@guangchuangyu</a> provides for <a href="https://twitter.com/hashtag/ggtree?src=hash">#ggtree</a> <a href="https://twitter.com/hashtag/rstats?src=hash">#rstats</a></p>&mdash; Jo Williams-Newkirk (@ajwnewkirk) <a href="https://twitter.com/ajwnewkirk/status/664040586001915904">November 10, 2015</a></blockquote>
372 
+<script async src="//platform.twitter.com/widgets.js" charset="utf-8"></script><blockquote class="twitter-tweet"><p lang="en" dir="ltr"><a href="https://twitter.com/tylerrinker">@tylerrinker</a> really appreciate all of <a href="https://twitter.com/guangchuangyu">@guangchuangyu</a> efforts with <a href="https://twitter.com/hashtag/ggtree?src=hash">#ggtree</a>; extends well beyond its original intent; love it</p>&mdash; timelyportfolio (@timelyportfolio) <a href="https://twitter.com/timelyportfolio/status/639507420054749184">September 3, 2015</a></blockquote>
373 
+<script async src="//platform.twitter.com/widgets.js" charset="utf-8"></script><blockquote class="twitter-tweet"><p lang="en" dir="ltr"><a href="https://twitter.com/guangchuangyu">@guangchuangyu</a> I even used <a href="https://twitter.com/hashtag/ggtree?src=hash">#ggtree</a>!</p>&mdash; Simon Frost (@sdwfrost) <a href="https://twitter.com/sdwfrost/status/671673570259509248">December 1, 2015</a></blockquote>
374 
+<script async src="//platform.twitter.com/widgets.js" charset="utf-8"></script><blockquote class="twitter-tweet"><p lang="en" dir="ltr"><a href="https://twitter.com/minisciencegirl">@minisciencegirl</a> Yep we use it mainly for that... there&#39;s a more featured version in <a href="https://t.co/5oOeLwx2Hg">https://t.co/5oOeLwx2Hg</a> but I need to switch to ggtree!</p>&mdash; Kat Holt (@DrKatHolt) <a href="https://twitter.com/DrKatHolt/status/667490462693912576">November 19, 2015</a></blockquote>
375 
+<script async src="//platform.twitter.com/widgets.js" charset="utf-8"></script><blockquote class="twitter-tweet"><p lang="en" dir="ltr">Sent my first <a href="https://twitter.com/hashtag/rstats?src=hash">#rstats</a> <a href="https://twitter.com/hashtag/shiny?src=hash">#shiny</a> app off to be alpha tested by a colleague today. Wouldn&#39;t be possible without <a href="https://twitter.com/hashtag/ggtree?src=hash">#ggtree</a>.</p>&mdash; Jo Williams-Newkirk (@ajwnewkirk) <a href="https://twitter.com/ajwnewkirk/status/660278158663401473">October 31, 2015</a></blockquote>
376 
+<script async src="//platform.twitter.com/widgets.js" charset="utf-8"></script><blockquote class="twitter-tweet"><p lang="en" dir="ltr"><a href="https://twitter.com/genetics_blog">@genetics_blog</a> Thanks. We have turned this into a shiny app too, but need to iron out some bugs... Also, try the new ggtree library!</p>&mdash; Kat Holt (@DrKatHolt) <a href="https://twitter.com/DrKatHolt/status/641251456595685376">September 8, 2015</a></blockquote>
377 
+<script async src="//platform.twitter.com/widgets.js" charset="utf-8"></script><blockquote class="twitter-tweet"><p lang="en" dir="ltr"><a href="https://twitter.com/guangchuangyu">@guangchuangyu</a> My bad :( It&#39;s working perfectly fine. Thanks so much for an awesome <a href="https://twitter.com/hashtag/rstats?src=hash">#rstats</a> <a href="https://twitter.com/hashtag/ggplot2?src=hash">#ggplot2</a> package ggtree! <a href="http://t.co/ofmzyOWe9C">pic.twitter.com/ofmzyOWe9C</a></p>&mdash; Ahmed Moustafa (@AhmedMoustafa) <a href="https://twitter.com/AhmedMoustafa/status/559734740488818688">January 26, 2015</a></blockquote>
378 
+<script async src="//platform.twitter.com/widgets.js" charset="utf-8"></script><blockquote class="twitter-tweet"><p lang="en" dir="ltr"><a href="https://twitter.com/guangchuangyu">@guangchuangyu</a> A bit improved version :) <a href="http://t.co/TZTSBK5aSm">pic.twitter.com/TZTSBK5aSm</a></p>&mdash; Ahmed Moustafa (@AhmedMoustafa) <a href="https://twitter.com/AhmedMoustafa/status/559762891478667264">January 26, 2015</a></blockquote>
379 
+<script async src="//platform.twitter.com/widgets.js" charset="utf-8"></script><blockquote class="twitter-tweet"><p lang="en" dir="ltr">I wish this guy was my student! <a href="https://twitter.com/guangchuangyu">@guangchuangyu</a> Sure, it won&#39;t get a Nature or Science paper, but who cares? <a href="http://t.co/XnA7uaFVms">http://t.co/XnA7uaFVms</a></p>&mdash; Simon Frost (@sdwfrost) <a href="https://twitter.com/sdwfrost/status/561514846291001344">January 31, 2015</a></blockquote>
380 
+<script async src="//platform.twitter.com/widgets.js" charset="utf-8"></script><blockquote class="twitter-tweet"><p lang="en" dir="ltr"><a href="https://twitter.com/CieraReports">@CieraReports</a> ggtree is a cool package that is based on the drawing of ggplot2 <a href="https://t.co/gFPHSdGAj1">https://t.co/gFPHSdGAj1</a></p>&mdash; Uryu Shinya (@u_ribo) <a href="https://twitter.com/u_ribo/status/559542705663905793">January 26, 2015</a></blockquote>
381 
+<script async src="//platform.twitter.com/widgets.js" charset="utf-8"></script><blockquote class="twitter-tweet"><p lang="en" dir="ltr"><a href="https://twitter.com/hashtag/ggtree?src=hash">#ggtree</a> <a href="https://t.co/VFrKCcz0DI">https://t.co/VFrKCcz0DI</a> is a pretty powerful <a href="https://twitter.com/hashtag/rstats?src=hash">#rstats</a> <a href="https://twitter.com/hashtag/ggplot2?src=hash">#ggplot2</a> <a href="https://twitter.com/Bioconductor">@Bioconductor</a> pkg for neat <a href="https://twitter.com/hashtag/phylogenetic?src=hash">#phylogenetic</a> <a href="https://twitter.com/hashtag/dataviz?src=hash">#dataviz</a> by <a href="https://twitter.com/guangchuangyu">@guangchuangyu</a></p>&mdash; Ahmed Moustafa (@AhmedMoustafa) <a href="https://twitter.com/AhmedMoustafa/status/561056244782227456">January 30, 2015</a></blockquote>
382 
+<script async src="//platform.twitter.com/widgets.js" charset="utf-8"></script><blockquote class="twitter-tweet"><p lang="en" dir="ltr">ggtree extends ggplot2 for phylogenetic trees. tons of documentation+examples: <a href="https://t.co/y9V52s2yWd">https://t.co/y9V52s2yWd</a> <a href="https://twitter.com/hashtag/Rstats?src=hash">#Rstats</a> <a href="https://t.co/Z9SDcueR2c">pic.twitter.com/Z9SDcueR2c</a></p>&mdash; Stephen Turner (@genetics_blog) <a href="https://twitter.com/genetics_blog/status/664085841766195200">November 10, 2015</a></blockquote>
383 
+<script async src="//platform.twitter.com/widgets.js" charset="utf-8"></script><blockquote class="twitter-tweet"><p lang="en" dir="ltr">Need to visualize some trees? Recent  <a href="https://twitter.com/hashtag/R?src=hash">#R</a> package <a href="https://twitter.com/hashtag/ggtree?src=hash">#ggtree</a> looks quite interesting. <a href="https://t.co/EPaXIqmvDZ">https://t.co/EPaXIqmvDZ</a></p>&mdash; Sebastian Schmidt (@TSBSchm) <a href="https://twitter.com/TSBSchm/status/664431087683260416">November 11, 2015</a></blockquote>
384 
+<script async src="//platform.twitter.com/widgets.js" charset="utf-8"></script><blockquote class="twitter-tweet"><p lang="en" dir="ltr"><a href="https://twitter.com/flashton2003">@flashton2003</a> world of possibilities now! Also looking at ggtree (ggplot2 expansion) for future stuff - that looks really cool too</p>&mdash; David W. Cleary (@Bacterioskeptic) <a href="https://twitter.com/Bacterioskeptic/status/667706456045694976">November 20, 2015</a></blockquote>
385 
+<script async src="//platform.twitter.com/widgets.js" charset="utf-8"></script><blockquote class="twitter-tweet"><p lang="en" dir="ltr">time for you to learn <a href="https://twitter.com/hashtag/rstats?src=hash">#rstats</a> <a href="https://twitter.com/LAevolving">@LAevolving</a> &lt;- <a href="https://twitter.com/stephspiel">@StephSpiel</a> new <a href="https://twitter.com/hashtag/Rstats?src=hash">#Rstats</a> package ggtree <a href="https://twitter.com/ggplot2">@ggplot2</a> <a href="https://t.co/DFmKGyTVwE">https://t.co/DFmKGyTVwE</a> <a href="https://t.co/WRBZHlRsIa">pic.twitter.com/WRBZHlRsIa</a></p>&mdash; Salamanda (@ajzellmer) <a href="https://twitter.com/ajzellmer/status/663937183791759360">November 10, 2015</a></blockquote>
386 
+<script async src="//platform.twitter.com/widgets.js" charset="utf-8"></script><blockquote class="twitter-tweet"><p lang="en" dir="ltr">V. cool new <a href="https://twitter.com/hashtag/Rstats?src=hash">#Rstats</a> package ggtree, addon 2 <a href="https://twitter.com/ggplot2">@ggplot2</a>, for automating tree drawing/annotating <a href="https://t.co/k3eSdVKp9C">https://t.co/k3eSdVKp9C</a> <a href="https://t.co/nH8SKSaXaN">pic.twitter.com/nH8SKSaXaN</a></p>&mdash; Stephanie Spielman (@stephspiel) <a href="https://twitter.com/stephspiel/status/663771499589861376">November 9, 2015</a></blockquote>
387 
+<script async src="//platform.twitter.com/widgets.js" charset="utf-8"></script><blockquote class="twitter-tweet"><p lang="en" dir="ltr">Can’t wait to try. MT <a href="https://twitter.com/genetics_blog">@genetics_blog</a>: ggtree extends ggplot2 for phylogenetic trees: <a href="https://t.co/JuThXlHUjz">https://t.co/JuThXlHUjz</a> <a href="https://twitter.com/hashtag/Rstats?src=hash">#Rstats</a> <a href="https://t.co/OmAzGghvqB">pic.twitter.com/OmAzGghvqB</a></p>&mdash; Kent Holsinger (@keholsinger) <a href="https://twitter.com/keholsinger/status/667433534756397057">November 19, 2015</a></blockquote>
388 
+<script async src="//platform.twitter.com/widgets.js" charset="utf-8"></script><blockquote class="twitter-tweet"><p lang="en" dir="ltr"><a href="https://twitter.com/guangchuangyu">@guangchuangyu</a> Excited to discover <a href="https://twitter.com/hashtag/ggtree?src=hash">#ggtree</a>; fills a lot of holes in my workflow but not seeing how to add bootstrap from ape?</p>&mdash; Jo Williams-Newkirk (@ajwnewkirk) <a href="https://twitter.com/ajwnewkirk/status/640573716733169664">September 6, 2015</a></blockquote>
389 
+<script async src="//platform.twitter.com/widgets.js" charset="utf-8"></script><blockquote class="twitter-tweet"><p lang="en" dir="ltr">ggtree added cool features, My favorite is the one from BEAST output <a href="https://t.co/3WOLxfTzRp">https://t.co/3WOLxfTzRp</a></p>&mdash; Manvendra Singh (@manvendr7) <a href="https://twitter.com/manvendr7/status/664407764001779712">November 11, 2015</a></blockquote>
390 
+<script async src="//platform.twitter.com/widgets.js" charset="utf-8"></script><blockquote class="twitter-tweet"><p lang="en" dir="ltr">ggtree looks useful: nice viz and annotations of phylogenetic trees with ggplot  <a href="https://twitter.com/hashtag/rstats?src=hash">#rstats</a> <a href="http://t.co/lbNKw3qIDI">http://t.co/lbNKw3qIDI</a>  thanks <a href="https://twitter.com/guangchuangyu">@guangchuangyu</a></p>&mdash; Julia Gustavsen (@JuliaGustavsen) <a href="https://twitter.com/JuliaGustavsen/status/630500659960254464">August 9, 2015</a></blockquote>
391 
+<script async src="//platform.twitter.com/widgets.js" charset="utf-8"></script><blockquote class="twitter-tweet"><p lang="en" dir="ltr">ggtree - looks like a very useful phylogenetic tree plotting package for R based on ggplot2 (<a href="https://t.co/UCXVVmG5W7">https://t.co/UCXVVmG5W7</a>)</p>&mdash; Simon J Greenhill (@SimonJGreenhill) <a href="https://twitter.com/SimonJGreenhill/status/547497335412899840">December 23, 2014</a></blockquote>
392 
+<script async src="//platform.twitter.com/widgets.js" charset="utf-8"></script><blockquote class="twitter-tweet"><p lang="en" dir="ltr">Plot trees &amp; annotation (incl BEAST, time axis) with ggtree for R!<a href="http://t.co/9ahqKQLTaI">http://t.co/9ahqKQLTaI</a><br>Well spotted <a href="https://twitter.com/mackas21">@mackas21</a> <a href="http://t.co/2ldvAiH2fj">pic.twitter.com/2ldvAiH2fj</a></p>&mdash; Kat Holt (@DrKatHolt) <a href="https://twitter.com/DrKatHolt/status/610364467939913728">June 15, 2015</a></blockquote>
393 
+<script async src="//platform.twitter.com/widgets.js" charset="utf-8"></script></p>
394 
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+			<aside class="copyright" role="note">
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+				&copy; 2017 Released under the Artistic-2.0 license &ndash;
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+				Documentation built with
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+
docs/tweets/index.rmd
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new file mode 100644
... ... 
@@ -0,0 +1,61 @@
1 
+---
2 
+date: 2017-07-25T00:11:02+01:00
3 
+title: Tweets
4 
+weight: 50
5 
+---
6 
+
7 
+
8 
+<link rel="stylesheet" href="https://guangchuangyu.github.io/css/font-awesome.min.css">
9 
+
10 
+<font size="4">**Leave me a message on <a href="https://twitter.com/hashtag/ggtree"><i class="fa fa-twitter fa-lg"></i></a>**</font>
11 
+
12 
+
13 
+````{r echo=FALSE}
14 
+blogdown::shortcode('tweet', '883301626022375424')
15 
+blogdown::shortcode('tweet', '883246854695256064')
16 
+blogdown::shortcode('tweet', '877576023109390336')
17 
+blogdown::shortcode('tweet', '875594411584782337')
18 
+blogdown::shortcode('tweet', '871775262152810496')
19 
+blogdown::shortcode('tweet', '867408666852511744')
20 
+blogdown::shortcode('tweet', '857665638600507393')
21 
+blogdown::shortcode('tweet', '840181267542994944')
22 
+blogdown::shortcode('tweet', '839831849736232962')
23 
+blogdown::shortcode('tweet', '830023569887391744')
24 
+blogdown::shortcode('tweet', '829398997735313408')
25 
+blogdown::shortcode('tweet', '824264788456984576')
26 
+blogdown::shortcode('tweet', '822383911258890242')
27 
+blogdown::shortcode('tweet', '811666431452450816')
28 
+blogdown::shortcode('tweet', '811661275889549312')
29 
+blogdown::shortcode('tweet', '797041236867686400')
30 
+blogdown::shortcode('tweet', '797037016403820546')
31 
+blogdown::shortcode('tweet', '794278716859879424')
32 
+blogdown::shortcode('tweet', '831952966701678592')
33 
+blogdown::shortcode('tweet', '788751417746059264')
34 
+blogdown::shortcode('tweet', '693123105707986944')
35 
+blogdown::shortcode('tweet', '691762302492790788')
36 
+blogdown::shortcode('tweet', '687933344219312128')
37 
+blogdown::shortcode('tweet', '684411780412526592')
38 
+blogdown::shortcode('tweet', '665188011047563268')
39 
+blogdown::shortcode('tweet', '664040586001915904')
40 
+blogdown::shortcode('tweet', '639507420054749184')
41 
+blogdown::shortcode('tweet', '671673570259509248')
42 
+blogdown::shortcode('tweet', '667490462693912576')
43 
+blogdown::shortcode('tweet', '660278158663401473')
44 
+blogdown::shortcode('tweet', '641251456595685376')
45 
+blogdown::shortcode('tweet', '559734740488818688')
46 
+blogdown::shortcode('tweet', '559762891478667264')
47 
+blogdown::shortcode('tweet', '561514846291001344')
48 
+blogdown::shortcode('tweet', '559542705663905793')
49 
+blogdown::shortcode('tweet', '561056244782227456')
50 
+blogdown::shortcode('tweet', '664085841766195200')
51 
+blogdown::shortcode('tweet', '664431087683260416')
52 
+blogdown::shortcode('tweet', '667706456045694976')
53 
+blogdown::shortcode('tweet', '663937183791759360')
54 
+blogdown::shortcode('tweet', '663771499589861376')
55 
+blogdown::shortcode('tweet', '667433534756397057')
56 
+blogdown::shortcode('tweet', '640573716733169664')
57 
+blogdown::shortcode('tweet', '664407764001779712')
58 
+blogdown::shortcode('tweet', '630500659960254464')
59 
+blogdown::shortcode('tweet', '547497335412899840')
60 
+blogdown::shortcode('tweet', '610364467939913728')
61 
+```
docs/tweets/index.xml
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1 
+<?xml version="1.0" encoding="utf-8" standalone="yes" ?>
2 
+<rss version="2.0" xmlns:atom="http://www.w3.org/2005/Atom">
3 
+  <channel>
4 
+    <title>Tweets on ggtree - Guangchuang Yu</title>
5 
+    <link>https://guangchuangyu.github.io/ggtree/tweets/</link>
6 
+    <description>Recent content in Tweets on ggtree - Guangchuang Yu</description>
7 
+    <generator>Hugo -- gohugo.io</generator>
8 
+    <language>en-us</language>
9 
+    <copyright>Released under the Artistic-2.0 license</copyright>
10 
+    <lastBuildDate>Tue, 25 Jul 2017 00:11:02 +0100</lastBuildDate>
11 
+
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+	<atom:link href="https://guangchuangyu.github.io/ggtree/tweets/index.xml" rel="self" type="application/rss+xml" />
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+
14 
+
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+    <item>
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+      <title>Tweets</title>
17 
+      <link>https://guangchuangyu.github.io/ggtree/tweets/</link>
18 
+      <pubDate>Tue, 25 Jul 2017 00:11:02 +0100</pubDate>
19 
+
20 
+      <guid>https://guangchuangyu.github.io/ggtree/tweets/</guid>
21 
+      <description>Leave me a message on
22 
+Second post with an update on how to add tip shapes and colours to ggtree https://t.co/ezWF4TVQst
23 
+&amp;mdash; Anthony Underwood (@bioinformAnt) July 7, 2017 Yes and no. No manual assignment =&amp;gt; randomly assigned colours. Even with manual spec ggtree is still much quicker than making fig by hand 😀
24 
+&amp;mdash; Anthony Underwood (@bioinformAnt) July 7, 2017 I&amp;#39;d use ggtree from Bioconductor as you can really tailor all the fonts etc.</description>
25 
+    </item>
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+
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+  </channel>
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+</rss>
0 29 
\ No newline at end of file
site_src/config.toml
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... ... 
@@ -73,6 +73,11 @@ relativeurls = true
73 73 
 	url    = "gallery/"
74 74 
 	weight = 40
75 75
76 
+[[menu.main]]
77 
+	name   = "Tweets"
78 
+	url    = "tweets/"
79 
+	weight = 50
80 
+
76 81 
 [blackfriday]
77 82 
 	smartypants	= true
78 83 
 	fractions = true
site_src/content/documentation/index.html
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... ... 
@@ -90,14 +90,6 @@ weight: 10
90 90 
 <li><a href="https://guangchuangyu.github.io/2015/12/use-emoji-font-in-r">use emoji font in R</a></li>
91 91 
 </ul>
92 92 
 </div>
93 
-<div id="users-feedback" class="section level3">
94 
-<h3><i class="fa fa-angle-double-right"></i> User’s feedback</h3>
95 
-<ul>
96 
-<li><a href="https://guangchuangyu.github.io/2016/02/tweets-of-ggtree">tweets of ggtree</a></li>
97 
-<li>Join the group chat on <a href="https://twitter.com/hashtag/ggtree"><i class="fa fa-twitter fa-lg"></i></a> and <a href="http://huati.weibo.com/k/ggtree"><i class="fa fa-weibo fa-lg"></i></a></li>
98 
-</ul>
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-<p><i class="fa fa-hand-o-right"></i> Find out more on <a href="https://guangchuangyu.github.io/tags/ggtree/" class="uri">https://guangchuangyu.github.io/tags/ggtree/</a>.</p>
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-</div>
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site_src/content/documentation/index.rmd
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 + [comic phylogenetic tree with ggtree and comicR](https://guangchuangyu.github.io/2015/09/comic-phylogenetic-tree-with-ggtree-and-comicr)
79 79 
 + [use emoji font in R](https://guangchuangyu.github.io/2015/12/use-emoji-font-in-r)
80 80
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-### <i class="fa fa-angle-double-right"></i> User's feedback
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-
83 
-+ [tweets of ggtree](https://guangchuangyu.github.io/2016/02/tweets-of-ggtree)
84 
-+ Join the group chat on <a href="https://twitter.com/hashtag/ggtree"><i class="fa fa-twitter fa-lg"></i></a> and <a href="http://huati.weibo.com/k/ggtree"><i class="fa fa-weibo fa-lg"></i></a>
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-
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-<i class="fa fa-hand-o-right"></i> Find out more on <https://guangchuangyu.github.io/tags/ggtree/>.
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 ## <i class="fa fa-slideshare"></i> Slides
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site_src/content/gallery/index.html
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-<p><a href="https://scholar.google.com.hk/scholar?oi=bibs&amp;hl=en&amp;cites=7268358477862164627"><img src="https://img.shields.io/badge/cited%20by-28-blue.svg?style=flat" alt="citation" /></a></p>
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+<p><a href="http://dx.doi.org/10.3389/fmicb.2017.00543" class="uri">http://dx.doi.org/10.3389/fmicb.2017.00543</a></p>
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+<p><a href="http://dx.doi.org/10.1186/s40168-017-0232-3" class="uri">http://dx.doi.org/10.1186/s40168-017-0232-3</a></p>
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-<li><a href="http://dx.doi.org/10.1111/2041-210X.12628" class="uri">http://dx.doi.org/10.1111/2041-210X.12628</a></li>
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+<p><a href="http://dx.doi.org/10.3389%2Ffcimb.2016.00036">http://dx.doi.org/10.3389%2Ffcimb.2016.00036</a></p>
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-<ul>
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-<li><a href="http://dx.doi.org/10.1016/j.meegid.2015.12.006" class="uri">http://dx.doi.org/10.1016/j.meegid.2015.12.006</a></li>
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-<h2><i class="fa fa-twitter"></i> Tweets</h2>
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-Adaptive radiation of <a href="https://twitter.com/hashtag/Darwin?src=hash">#Darwin</a>'s finches showing <a href="https://twitter.com/hashtag/genotypic?src=hash">#genotypic</a> and <a href="https://twitter.com/hashtag/morphometric?src=hash">#morphometric</a> evolution. Good excuse to practice with <a href="https://twitter.com/hashtag/ggtree?src=hash">#ggtree</a> <a href="https://twitter.com/guangchuangyu"><span class="citation">@guangchuangyu</span></a> <a href="https://t.co/JJZ3Yje58s">pic.twitter.com/JJZ3Yje58s</a>
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-</p>
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-— Will Harvey (<span class="citation">@_wharvey</span>) <a href="https://twitter.com/_wharvey/status/831952966701678592">February 15, 2017</a>
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-am quite liking <a href="https://twitter.com/hashtag/ggtree?src=hash">#ggtree</a> <a href="https://twitter.com/hashtag/rstats?src=hash">#rstats</a> <a href="https://twitter.com/hashtag/ggplot?src=hash">#ggplot</a> <a href="https://t.co/hvywS2z4ps">pic.twitter.com/hvywS2z4ps</a>
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-</p>
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-— Nicholas E Ilott (<span class="citation">@IlottNick</span>) <a href="https://twitter.com/IlottNick/status/788751417746059264">October 19, 2016</a>
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-Capital G, a reproducible logo produced by <a href="https://twitter.com/hashtag/ggtree?src=hash">#ggtree</a> <a href="https://twitter.com/hashtag/dataviz?src=hash">#dataviz</a> <a href="https://twitter.com/hashtag/rstats?src=hash">#rstats</a> <a href="https://twitter.com/hashtag/ggplot2?src=hash">#ggplot2</a> <a href="https://t.co/lJDcgfxAEh">pic.twitter.com/lJDcgfxAEh</a>
93 
-</p>
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-— Guangchuang Yu (<span class="citation">@guangchuangyu</span>) <a href="https://twitter.com/guangchuangyu/status/786429360823644160">October 13, 2016</a>
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-associate tree with different type of data by <a href="https://twitter.com/hashtag/ggtree?src=hash">#ggtree</a> <a href="https://t.co/6w755VWytZ">https://t.co/6w755VWytZ</a> <a href="https://t.co/K8WViEi13E">pic.twitter.com/K8WViEi13E</a>
99 
-</p>
100 
-— Guangchuang Yu (<span class="citation">@guangchuangyu</span>) <a href="https://twitter.com/guangchuangyu/status/773359054924095488">September 7, 2016</a>
101 
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-how about using emoji to label host species in phylogenetic tree? <a href="https://twitter.com/hashtag/rstats?src=hash">#rstats</a> <a href="https://twitter.com/hashtag/visualization?src=hash">#visualization</a> <a href="https://twitter.com/hashtag/ggtree?src=hash">#ggtree</a> <a href="https://twitter.com/hashtag/emojifont?src=hash">#emojifont</a> <a href="https://t.co/MRKQvNNAUh">pic.twitter.com/MRKQvNNAUh</a>
105 
-</p>
106 
-— Guangchuang Yu (<span class="citation">@guangchuangyu</span>) <a href="https://twitter.com/guangchuangyu/status/708160510441566211">March 11, 2016</a>
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-</blockquote>
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-<blockquote class="twitter-tweet" data-lang="en">
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-<a href="https://twitter.com/hashtag/phylomoji?src=hash">#phylomoji</a> with <a href="https://twitter.com/hashtag/ggtree?src=hash">#ggtree</a> <a href="https://t.co/yMUtm1jYF9">pic.twitter.com/yMUtm1jYF9</a>
111 
-</p>
112 
-— Guangchuang Yu (<span class="citation">@guangchuangyu</span>) <a href="https://twitter.com/guangchuangyu/status/667337429704011777">November 19, 2015</a>
113 
-</blockquote>
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-multiple sequence alignment with <a href="https://twitter.com/hashtag/phylogenetic?src=hash">#phylogenetic</a> tree via <a href="https://twitter.com/hashtag/rstats?src=hash">#rstats</a> pkg <a href="https://twitter.com/hashtag/ggtree?src=hash">#ggtree</a>. <a href="http://t.co/6CY57dLdeb">pic.twitter.com/6CY57dLdeb</a>
117 
-</p>
118 
-— Guangchuang Yu (<span class="citation">@guangchuangyu</span>) <a href="https://twitter.com/guangchuangyu/status/601676060254605312">May 22, 2015</a>
119 
-</blockquote>
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-<blockquote class="twitter-tweet" data-lang="en">
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-<a href="https://twitter.com/hashtag/comictree?src=hash">#comictree</a> via <a href="https://twitter.com/hashtag/ggtree?src=hash">#ggtree</a> and <a href="https://twitter.com/hashtag/comicR?src=hash">#comicR</a> in <a href="https://twitter.com/hashtag/rstats?src=hash">#rstats</a> <a href="http://t.co/zwCuOQ49bq">pic.twitter.com/zwCuOQ49bq</a>
123 
-</p>
124 
-— Guangchuang Yu (<span class="citation">@guangchuangyu</span>) <a href="https://twitter.com/guangchuangyu/status/599078224576942080">May 15, 2015</a>
125 
-</blockquote>
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-<script async src="//platform.twitter.com/widgets.js" charset="utf-8"></script>
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-</div>
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+<p><a href="http://dx.doi.org/10.1016/j.meegid.2015.12.006" class="uri">http://dx.doi.org/10.1016/j.meegid.2015.12.006</a></p>
site_src/content/gallery/index.rmd
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