... | ... |
@@ -1,7 +1,7 @@ |
1 | 1 |
setOldClass("phylo") |
2 | 2 |
setOldClass("multiPhylo") |
3 |
-setOldClass("gg") |
|
4 |
-setOldClass("ggplot") |
|
3 |
+setOldClass("ggtree") |
|
4 |
+ |
|
5 | 5 |
|
6 | 6 |
setClassUnion("phyloOrmultiPhylo", c("phylo", "multiPhylo")) |
7 | 7 |
|
... | ... |
@@ -15,7 +15,7 @@ supported_tree_object <- function() { |
15 | 15 |
"jplace", |
16 | 16 |
"nhx", |
17 | 17 |
"paml_rst", |
18 |
- "phangorn", |
|
18 |
+ "phangorn", |
|
19 | 19 |
"phylip", |
20 | 20 |
"r8s", |
21 | 21 |
"raxml") |
... | ... |
@@ -50,7 +50,7 @@ setClass("apeBootstrap", |
50 | 50 |
##' @name beast-class |
51 | 51 |
##' @aliases beast-class |
52 | 52 |
##' get.tree,beast-method |
53 |
-##' |
|
53 |
+##' |
|
54 | 54 |
##' @docType class |
55 | 55 |
##' @slot fields beast statistic variables |
56 | 56 |
##' @slot treetext tree text in beast file |
... | ... |
@@ -114,7 +114,7 @@ setClass("codeml_mlc", |
114 | 114 |
##' @aliases paml_rst-class |
115 | 115 |
##' set.subs,paml_rst-method |
116 | 116 |
##' set.subs<-,paml_rst-method |
117 |
-##' |
|
117 |
+##' |
|
118 | 118 |
##' @docType class |
119 | 119 |
##' @slot fields availabel attributes |
120 | 120 |
##' @slot treetext tree text |