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Commit id: ca17acc22b608158936b9c2790bff2f7504f38d9

add author



git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ggtree@103112 bc3139a8-67e5-0310-9ffc-ced21a209358

g.yu authored on 27/04/2015 03:15:40
Showing 67 changed files

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 Package: ggtree
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 Type: Package
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 Title: a phylogenetic tree viewer for different types of tree annotations
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-Version: 1.1.0
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-Author: Guangchuang Yu
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+Version: 1.1.1
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+Author: Guangchuang Yu and Tommy Tsan-Yuk Lam
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 Maintainer: Guangchuang Yu <guangchuangyu@gmail.com>
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 Description: ggtree extends the ggplot2 plotting system which implemented the
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     grammar of graphics. ggtree is designed for visualizing phylogenetic tree
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-# Generated by roxygen2 (4.1.0): do not edit by hand
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+# Generated by roxygen2 (4.1.1): do not edit by hand
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 S3method(as.binary,phylo)
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 S3method(as.data.frame,phylo)
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+CHANGES IN VERSION 1.1.1
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+------------------------
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+ o add Tommy in author <2015-04-27, Mon>
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+ 
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 CHANGES IN VERSION 0.99.28
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 ------------------------
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  o update vignette with floating table of content <2015-04-08, Wed>
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@@ -9,7 +9,7 @@ The `ggtree` package extending the `ggplot2` package. It based on grammar of gra
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 ## Authors ##
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-Guangchuang YU, School of Public Health, The University of Hong Kong [http://ygc.name](http://ygc.name)
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+Guangchuang Yu and Tommy Tsan-Yuk Lam, School of Public Health, The University of Hong Kong.
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 ## License ##
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-% Generated by roxygen2 (4.1.0): do not edit by hand
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+% Generated by roxygen2 (4.1.1): do not edit by hand
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 % Please edit documentation in R/NJ.R
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 \name{NJ}
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 \alias{NJ}
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+% Generated by roxygen2 (4.1.1): do not edit by hand
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 % Please edit documentation in R/tree.R
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 \name{\%<+\%}
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 \alias{\%<+\%}
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-% Generated by roxygen2 (4.1.0): do not edit by hand
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+% Generated by roxygen2 (4.1.1): do not edit by hand
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 % Please edit documentation in R/ggplot2.R
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 \name{aes}
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 \alias{aes}
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+% Generated by roxygen2 (4.1.1): do not edit by hand
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 % Please edit documentation in R/AllGenerics.R, R/treeIO.R
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 \name{as.binary}
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 \alias{as.binary}
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-% Generated by roxygen2 (4.1.0): do not edit by hand
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+% Generated by roxygen2 (4.1.1): do not edit by hand
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 % Please edit documentation in R/treeIO.R
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 \name{as.data.frame.phylo}
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 \alias{as.data.frame.phylo}
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-% Generated by roxygen2 (4.1.0): do not edit by hand
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+% Generated by roxygen2 (4.1.1): do not edit by hand
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 % Please edit documentation in R/AllClasses.R
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 \docType{class}
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 \name{beast-class}
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 % Please edit documentation in R/AllClasses.R
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 \docType{class}
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 \name{codeml-class}
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 % Please edit documentation in R/AllClasses.R
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 \docType{class}
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 \name{codeml_mlc-class}
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-% Generated by roxygen2 (4.1.0): do not edit by hand
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 % Please edit documentation in R/ggtree.R
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 \name{collapse}
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 \alias{collapse}
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 % Please edit documentation in R/utilities.R
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 \name{.}
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 \alias{.}
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-% Generated by roxygen2 (4.1.0): do not edit by hand
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+% Generated by roxygen2 (4.1.1): do not edit by hand
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 % Please edit documentation in R/phylopic.R
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 \name{download.phylopic}
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 \alias{download.phylopic}
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-% Generated by roxygen2 (4.1.0): do not edit by hand
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 % Please edit documentation in R/ggtree.R
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 \name{expand}
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 \alias{expand}
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-% Generated by roxygen2 (4.1.0): do not edit by hand
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+% Generated by roxygen2 (4.1.1): do not edit by hand
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 % Please edit documentation in R/treeIO.R
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 \name{fortify.phylo}
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 \alias{fortify.phylo}
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-% Generated by roxygen2 (4.1.0): do not edit by hand
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+% Generated by roxygen2 (4.1.1): do not edit by hand
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 % Please edit documentation in R/ggtree.R
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 \name{geom_aline}
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 \alias{geom_aline}
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-% Generated by roxygen2 (4.1.0): do not edit by hand
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+% Generated by roxygen2 (4.1.1): do not edit by hand
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 % Please edit documentation in R/ggtree.R
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 \name{geom_hilight}
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 \alias{geom_hilight}
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-% Generated by roxygen2 (4.1.0): do not edit by hand
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 % Please edit documentation in R/ggplot2.R
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 \name{geom_text}
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 \alias{geom_text}
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-% Generated by roxygen2 (4.1.0): do not edit by hand
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+% Generated by roxygen2 (4.1.1): do not edit by hand
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 % Please edit documentation in R/ggtree.R
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 \name{geom_tiplab}
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 \alias{geom_tiplab}
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-% Generated by roxygen2 (4.1.0): do not edit by hand
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 % Please edit documentation in R/ggtree.R
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 \name{geom_tippoint}
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 \alias{geom_tippoint}
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 % Please edit documentation in R/ggtree.R
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 \name{geom_tree}
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 \alias{geom_tree}
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-% Generated by roxygen2 (4.1.0): do not edit by hand
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 % Please edit documentation in R/AllGenerics.R, R/beast.R, R/codeml.R, R/codeml_mlc.R, R/hyphy.R, R/jplace.R, R/paml_rst.R
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 \docType{methods}
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 \name{get.fields}
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 % Please edit documentation in R/tree.R
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 \name{get.offspring.tip}
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 \alias{get.offspring.tip}
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 % Please edit documentation in R/tree.R
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 \name{get.path}
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 \alias{get.path}
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-% Generated by roxygen2 (4.1.0): do not edit by hand
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 % Please edit documentation in R/phylopic.R
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 \name{get.phylopic}
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 \alias{get.phylopic}
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 % Please edit documentation in R/AllGenerics.R, R/jplace.R
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 \docType{methods}
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 \name{get.placements}
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 % Please edit documentation in R/AllGenerics.R, R/codeml.R, R/hyphy.R, R/paml_rst.R
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 \docType{methods}
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 \name{get.subs}
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 % Please edit documentation in R/AllGenerics.R, R/codeml.R, R/paml_rst.R
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 \docType{methods}
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 \name{get.tipseq}
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-% Generated by roxygen2 (4.1.0): do not edit by hand
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 % Please edit documentation in R/AllGenerics.R, R/beast.R, R/codeml.R, R/codeml_mlc.R, R/hyphy.R, R/jplace.R, R/paml_rst.R, R/phylo.R
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 \docType{methods}
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 \name{get.tree}
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 % Please edit documentation in R/AllGenerics.R, R/jplace.R
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 \docType{methods}
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 \name{get.treeinfo}
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 % Please edit documentation in R/AllGenerics.R, R/jplace.R
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 % Please edit documentation in R/tree.R
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 % Please edit documentation in R/tree.R
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 % Please edit documentation in R/ggplot2.R
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 \name{ggplotGrob}
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 % Please edit documentation in R/ggtree-package.R, R/ggtree.R
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 \name{ggtree}
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 % Please edit documentation in R/AllGenerics.R, R/beast.R, R/codeml.R, R/codeml_mlc.R, R/hyphy.R, R/jplace.R, R/paml_rst.R, R/phylo.R
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 % Please edit documentation in R/AllGenerics.R, R/beast.R, R/codeml.R, R/codeml_mlc.R, R/hyphy.R, R/jplace.R, R/paml_rst.R, R/phylo.R
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 % Please edit documentation in R/AllGenerics.R, R/beast.R, R/codeml.R, R/codeml_mlc.R, R/hyphy.R, R/paml_rst.R, R/phylo.R
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 % Please edit documentation in R/AllGenerics.R, R/beast.R, R/codeml.R, R/codeml_mlc.R, R/hyphy.R, R/paml_rst.R
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 % Please edit documentation in R/AllGenerics.R, R/beast.R, R/codeml.R, R/codeml_mlc.R, R/hyphy.R, R/jplace.R, R/paml_rst.R, R/phylo.R
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 \name{\%<\%}
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 \name{write.jplace}
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 \alias{write.jplace}
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 title: "ggtree: a phylogenetic tree viewer for different types of tree annotations"
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 author: "\\
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-	Guangchuang Yu\\
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-
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-	<guangchuangyu@gmail.com>\\
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+	Guangchuang Yu (<guangchuangyu@gmail.com>) and Tommy Tsan-Yuk Lam (<ttylam@hku.hk>)\\
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         School of Public Health, The University of Hong Kong"
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 date: "`r Sys.Date()`"