@@ -1,14 +1,13 @@

 Package: ggtree

 Type: Package

-Title: a phylogenetic tree viewer for different types of tree annotations

+Title: an R package for visualization and annotation of phylogenetic trees with their covariates and other associated data

 Version: 1.5.6

 Author: Guangchuang Yu and Tommy Tsan-Yuk Lam

 Maintainer: Guangchuang Yu <guangchuangyu@gmail.com>

-Description: ggtree extends the ggplot2 plotting system which implemented the

-    grammar of graphics. ggtree is designed for visualizing phylogenetic tree

-    and different types of associated annotation data.

+Description: 'ggtree' extends the 'ggplot2' plotting system which implemented the grammar of graphics.

+	     'ggtree' is designed for visualization and annotation of phylogenetic trees with their covariates and other associated data.

 Depends:

-    R (>= 3.2.0),

+    R (>= 3.3.0),

     ggplot2 (>= 2.0.0)

 Imports:

     ape,

@@ -1,5 +1,7 @@

 CHANGES IN VERSION 1.5.6

 ------------------------

+ o identify method for ggtree <2016-06-28, Tue>

+   + see https://guangchuangyu.github.io/2016/06/identify-method-for-ggtree

  o geom_balance contributed by Justin Silverman <2016-06-22, Wed>

    + see https://github.com/GuangchuangYu/ggtree/pull/64

@@ -1,4 +1,4 @@

-#  ggtree: a phylogenetic tree viewer for different types of tree annotations

+#  ggtree: an R package for visualization and annotation of phylogenetic trees with their covariates and other associated data

 <!--[![Build Status](https://travis-ci.org/GuangchuangYu/ggtree.svg?branch=master)](https://travis-ci.org/GuangchuangYu/ggtree)

 [![Build Status](https://ci.appveyor.com/api/projects/status/github/GuangchuangYu/ggtree?svg=true)](https://ci.appveyor.com/project/GuangchuangYu/ggtree/branch/master)-->

@@ -53,7 +53,9 @@ vignette("ggtree", package = "ggtree")

 More documents can be found in <https://guangchuangyu.github.io/ggtree>.

-## Bugs/Feature requests ##

+## Feedback ##

- - If you have any, [let me know](https://github.com/GuangchuangYu/ggtree/issues). Thx!

+ - For bugs or feature request, please post to [github issue](https://github.com/GuangchuangYu/ggtree/issues).

+ - For user questions, please post to [google group](https://groups.google.com/forum/#!forum/bioc-ggtree) or post to [Bioconductor support site](https://support.bioconductor.org/) or [Biostars](https://www.biostars.org/). We are following every post tagged with **ggtree**.

+ 

@@ -112,11 +112,13 @@ Visualizing an annotated phylogenetic tree with numerical matrix (e.g. genotype

 + [ggtree utilities](ggtreeUtilities.html)

-More documents can be found in <http://guangchuangyu.github.io/ggtree>.

+More documents can be found in <https://guangchuangyu.github.io/ggtree>.

-# Bugs/Feature requests

+## Feedback ##

-If you have any, [let me know](https://github.com/GuangchuangYu/ggtree/issues). Thx!

+ - For bugs or feature request, please post to [github issue](https://github.com/GuangchuangYu/ggtree/issues).

+ - For user questions, please post to [google group](https://groups.google.com/forum/#!forum/bioc-ggtree) or post to [Bioconductor support site](https://support.bioconductor.org/) or [Biostars](https://www.biostars.org/). We are following every post tagged with **ggtree**.

+  

 # Session info

@@ -319,6 +319,9 @@ ggtree(tr2) + geom_tiplab(aes(color=place)) +

 Advance tree annotation including visualizing phylogenetic tree with associated matrix and multiple sequence alignment; annotating tree with subplots and images (especially PhyloPic). For details and examples, please refer to the [Advance Tree Annotation](advanceTreeAnnotation.html) vignette.

+# Interactive tree annotation

+

+Interactive tree annotation is also possible, please refer to <https://guangchuangyu.github.io/2016/06/identify-method-for-ggtree>.

 # References

@@ -273,3 +273,9 @@ for (angle in seq(0, 270, 10)) {

 ```

 ![](figures/rotate_tree.gif)

+

+

+# Interactive tree manipulation

+

+Interactive tree manipulation is also possible, please refer to <https://guangchuangyu.github.io/2016/06/identify-method-for-ggtree>.

+