git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ggtree@120154 bc3139a8-67e5-0310-9ffc-ced21a209358
... | ... |
@@ -1,7 +1,7 @@ |
1 | 1 |
Package: ggtree |
2 | 2 |
Type: Package |
3 | 3 |
Title: an R package for visualization and annotation of phylogenetic trees with their covariates and other associated data |
4 |
-Version: 1.5.9 |
|
4 |
+Version: 1.5.10 |
|
5 | 5 |
Author: Guangchuang Yu and Tommy Tsan-Yuk Lam |
6 | 6 |
Maintainer: Guangchuang Yu <guangchuangyu@gmail.com> |
7 | 7 |
Description: 'ggtree' extends the 'ggplot2' plotting system which implemented the grammar of graphics. |
... | ... |
@@ -1,3 +1,8 @@ |
1 |
+CHANGES IN VERSION 1.5.10 |
|
2 |
+------------------------ |
|
3 |
+ o fixed issue #72 for label of geom_treescale not displayed <2016-08-16, Tue> |
|
4 |
+ + https://github.com/GuangchuangYu/ggtree/issues/72 |
|
5 |
+ |
|
1 | 6 |
CHANGES IN VERSION 1.5.9 |
2 | 7 |
------------------------ |
3 | 8 |
o update citation info <2016-08-12, Fri> |
... | ... |
@@ -19,7 +19,7 @@ geom_treescale <- function(x=NULL, y=NULL, width=NULL, offset=NULL, color="black |
19 | 19 |
data=NULL |
20 | 20 |
position="identity" |
21 | 21 |
show.legend=NA |
22 |
- na.rm=FALSE |
|
22 |
+ na.rm=TRUE |
|
23 | 23 |
inherit.aes=FALSE |
24 | 24 |
|
25 | 25 |
default_aes <- aes_(x=~x, y=~y) |
... | ... |
@@ -74,7 +74,7 @@ stat_treeScaleText <- function(mapping=NULL, data=NULL, |
74 | 74 |
xx, yy, width, offset, color, ..., |
75 | 75 |
show.legend=NA, inherit.aes=TRUE, na.rm=FALSE) { |
76 | 76 |
|
77 |
- default_aes <- aes_(x=~x, y=~y, label=~label) |
|
77 |
+ default_aes <- aes_(x=~x, y=~y, label=~x) |
|
78 | 78 |
if (is.null(mapping)) { |
79 | 79 |
mapping <- default_aes |
80 | 80 |
} else { |
... | ... |
@@ -149,9 +149,9 @@ get_treescale_position <- function(data, xx, yy, width, offset=NULL) { |
149 | 149 |
TextPosition=data.frame(x=x+d/2, y=y+offset, label=d)) |
150 | 150 |
} |
151 | 151 |
|
152 |
-##' add evolution distance legend |
|
153 |
-##' |
|
154 |
-##' |
|
152 |
+## ##' add evolution distance legend |
|
153 |
+## ##' |
|
154 |
+## ##' |
|
155 | 155 |
## ##' @title add_legend |
156 | 156 |
## ##' @param p tree view |
157 | 157 |
## ##' @param width width of legend |
... | ... |
@@ -3,9 +3,9 @@ ggtree: an R package for visualization and annotation of phylogenetic trees with |
3 | 3 |
|
4 | 4 |
[](https://www.bioconductor.org/packages/devel/bioc/html/ggtree.html#archives) [](https://bioconductor.org/checkResults/devel/bioc-LATEST/ggtree/) [](https://travis-ci.org/GuangchuangYu/ggtree) [](https://ci.appveyor.com/project/GuangchuangYu/ggtree) [](http://bioconda.github.io/recipes/bioconductor-ggtree/README.html) |
5 | 5 |
|
6 |
-[](http://www.repostatus.org/#active) [](https://codecov.io/gh/GuangchuangYu/ggtree) [](https://github.com/GuangchuangYu/ggtree/commits/master) [](https://www.bioconductor.org/packages/devel/bioc/html/ggtree.html#svn_source) [](https://github.com/GuangchuangYu/ggtree/network) [](https://github.com/GuangchuangYu/ggtree/stargazers) |
|
6 |
+[](http://www.repostatus.org/#active) [](https://codecov.io/gh/GuangchuangYu/ggtree) [](https://github.com/GuangchuangYu/ggtree/commits/master) [](https://www.bioconductor.org/packages/devel/bioc/html/ggtree.html#svn_source) [](https://github.com/GuangchuangYu/ggtree/network) [](https://github.com/GuangchuangYu/ggtree/stargazers) |
|
7 | 7 |
|
8 |
-[](https://bioconductor.org/packages/ggtree) [](https://github.com/GuangchuangYu/ggtree) [](https://www.bioconductor.org/packages/devel/bioc/html/ggtree.html#since) [](https://support.bioconductor.org/t/ggtree/) [](https://bioconductor.org/packages/stats/bioc/ggtree/) |
|
8 |
+[](https://bioconductor.org/packages/ggtree) [](https://github.com/GuangchuangYu/ggtree) [](https://www.bioconductor.org/packages/devel/bioc/html/ggtree.html#since) [](https://support.bioconductor.org/t/ggtree/) [](https://bioconductor.org/packages/stats/bioc/ggtree/) |
|
9 | 9 |
|
10 | 10 |
The `ggtree` package extending the `ggplot2` package. It based on grammar of graphics and takes all the good parts of `ggplot2`. `ggtree` is designed for not only viewing phylogenetic tree but also displaying annotation data on the tree. |
11 | 11 |
|
... | ... |
@@ -28,7 +28,7 @@ For details, please visit our project website, <https://guangchuangyu.github.io/ |
28 | 28 |
|
29 | 29 |
### Download stats |
30 | 30 |
|
31 |
-[](https://bioconductor.org/packages/stats/bioc/ggtree/) [](https://bioconductor.org/packages/stats/bioc/ggtree/) [](https://bioconductor.org/packages/stats/bioc/ggtree/) |
|
31 |
+[](https://bioconductor.org/packages/stats/bioc/ggtree/) [](https://bioconductor.org/packages/stats/bioc/ggtree/) [](https://bioconductor.org/packages/stats/bioc/ggtree/) |
|
32 | 32 |
|
33 | 33 |
+---------------------------+---------------------------+----------------------------+--------+ |
34 | 34 |
| * | |