Browse code

redirect site

guangchuang yu authored on 05/03/2018 03:54:27
Showing2 changed files

... ...
@@ -14,8 +14,6 @@ html_preview: false
14 14
 #library("txtplot")
15 15
 library("badger")
16 16
 library("ypages")
17
-library("ggplot2")
18
-library("yyplot")
19 17
 ```
20 18
 
21 19
 <img src="https://raw.githubusercontent.com/Bioconductor/BiocStickers/master/ggtree/ggtree.png" height="200" align="right" />
... ...
@@ -1,9 +1,9 @@
1 1
 <!DOCTYPE html>
2
-  
3
-  
4
-  
5
-  
6
-   <html class="no-js"> 
2
+
3
+
4
+
5
+
6
+   <html class="no-js">
7 7
 
8 8
   <head lang="en-us">
9 9
     <meta charset="utf-8">
... ...
@@ -12,585 +12,14 @@
12 12
     <title>ggtree</title>
13 13
     <meta name="generator" content="Hugo 0.30.2" />
14 14
 
15
-    
16
-    <meta name="description" content="Visualization and annotation of phylogenetic trees.">
17
-    
18
-    <link rel="canonical" href="https://guangchuangyu.github.io/ggtree/">
19
-    
20
-    <meta name="author" content="Guangchuang Yu">
21
-    
22
-
23
-    <meta property="og:url" content="https://guangchuangyu.github.io/ggtree/">
24
-    <meta property="og:title" content="ggtree">
25
-    <meta property="og:image" content="https://guangchuangyu.github.io/ggtree/images/gc.png">
26
-    <meta name="apple-mobile-web-app-title" content="ggtree">
27
-    <meta name="apple-mobile-web-app-capable" content="yes">
28
-    <meta name="apple-mobile-web-app-status-bar-style" content="black-translucent">
29
-
30
-    <link rel="shortcut icon" type="image/x-icon" href="https://guangchuangyu.github.io/ggtree/images/favicon.ico">
31
-    <link rel="icon" type="image/x-icon" href="https://guangchuangyu.github.io/ggtree/images/favicon.ico">
32
-
33
-    <style>
34
-      @font-face {
35
-        font-family: 'Icon';
36
-        src: url('https://guangchuangyu.github.io/ggtree/fonts/icon.eot');
37
-        src: url('https://guangchuangyu.github.io/ggtree/fonts/icon.eot')
38
-               format('embedded-opentype'),
39
-             url('https://guangchuangyu.github.io/ggtree/fonts/icon.woff')
40
-               format('woff'),
41
-             url('https://guangchuangyu.github.io/ggtree/fonts/icon.ttf')
42
-               format('truetype'),
43
-             url('https://guangchuangyu.github.io/ggtree/fonts/icon.svg')
44
-               format('svg');
45
-        font-weight: normal;
46
-        font-style: normal;
47
-      }
48
-    </style>
49
-
50
-    <link rel="stylesheet" href="https://guangchuangyu.github.io/ggtree/stylesheets/application.css">
51
-    <link rel="stylesheet" href="https://guangchuangyu.github.io/ggtree/stylesheets/temporary.css">
52
-    <link rel="stylesheet" href="https://guangchuangyu.github.io/ggtree/stylesheets/palettes.css">
53
-    <link rel="stylesheet" href="https://guangchuangyu.github.io/ggtree/stylesheets/highlight/highlight.css">
54
-
55
-    
56
-    
57
-    
58
-    <link rel="stylesheet" href="//fonts.googleapis.com/css?family=Ubuntu:400,700|Ubuntu&#43;Mono">
59
-    <style>
60
-      body, input {
61
-        font-family: 'Ubuntu', Helvetica, Arial, sans-serif;
62
-      }
63
-      pre, code {
64
-        font-family: 'Ubuntu Mono', 'Courier New', 'Courier', monospace;
65
-      }
66
-    </style>
67
-
68
-    
69
-    <script src="https://guangchuangyu.github.io/ggtree/javascripts/modernizr.js"></script>
70
-
71
-    
72
-    <link href="https://guangchuangyu.github.io/ggtree/index.xml" rel="alternate" type="application/rss+xml" title="ggtree" />
73
-    <link href="https://guangchuangyu.github.io/ggtree/index.xml" rel="feed" type="application/rss+xml" title="ggtree" />
74
-    
75
-
76
-  </head>
77
-  <body class="palette-primary-teal palette-accent-teal">
78
-
79
-
80
-
81
-	
82
-	
83
-
84
-
85
-<div class="backdrop">
86
-	<div class="backdrop-paper"></div>
87
-</div>
88
-
89
-<input class="toggle" type="checkbox" id="toggle-drawer">
90
-<input class="toggle" type="checkbox" id="toggle-search">
91
-<label class="toggle-button overlay" for="toggle-drawer"></label>
92
-
93
-<header class="header">
94
-	<nav aria-label="Header">
95
-  <div class="bar default">
96
-    <div class="button button-menu" role="button" aria-label="Menu">
97
-      <label class="toggle-button icon icon-menu" for="toggle-drawer">
98
-        <span></span>
99
-      </label>
100
-    </div>
101
-    <div class="stretch">
102
-      <div class="title">
103
-        ggtree
104
-      </div>
105
-    </div>
106
-
107
-    
108
-    <div class="button button-twitter" role="button" aria-label="Twitter">
109
-       <a href="https://twitter.com/guangchuangyu" title="@guangchuangyu on Twitter" target="_blank" class="toggle-button icon icon-twitter"></a>
110
-    </div>
111
-    
112
-
113
-    
114
-    <div class="button button-github" role="button" aria-label="GitHub">
115
-      <a href="https://github.com/GuangchuangYu" title="@GuangchuangYu on GitHub" target="_blank" class="toggle-button icon icon-github"></a>
116
-    </div>
117
-    
118
-    
119
-        
120
-  </div>
121
-  <div class="bar search">
122
-    <div class="button button-close" role="button" aria-label="Close">
123
-      <label class="toggle-button icon icon-back" for="toggle-search"></label>
124
-    </div>
125
-    <div class="stretch">
126
-      <div class="field">
127
-        <input class="query" type="text" placeholder="Search" autocapitalize="off" autocorrect="off" autocomplete="off" spellcheck>
128
-      </div>
129
-    </div>
130
-    <div class="button button-reset" role="button" aria-label="Search">
131
-      <button class="toggle-button icon icon-close" id="reset-search"></button>
132
-    </div>
133
-  </div>
134
-</nav>
135
-</header>
136
-
137
-<main class="main">
138
-	<div class="drawer">
139
-		<nav aria-label="Navigation">
140
-  <a href="https://github.com/GuangchuangYu/ggtree" class="project">
141
-    <div class="banner">
142
-      
143
-        <div class="logo">
144
-          <img src="https://guangchuangyu.github.io/ggtree/images/gc.png">
145
-        </div>
146
-      
147
-      <div class="name">
148
-        <strong>ggtree </strong>
149
-        
150
-          <br>
151
-          GuangchuangYu/ggtree
152
-        
153
-      </div>
154
-    </div>
155
-  </a>
156
-
157
-  <div class="scrollable">
158
-    <div class="wrapper">
159
-      
160
-        <ul class="repo">
161
-          <li class="repo-download">
162
-            <a href="https://github.com/GuangchuangYu/ggtree/archive/master.zip" target="_blank" title="Download" data-action="download">
163
-              <i class="icon icon-download"></i> Download
164
-            </a>
165
-          </li>
166
-          <li class="repo-stars">
167
-            <a href="https://github.com/GuangchuangYu/ggtree/stargazers" target="_blank" title="Stargazers" data-action="star">
168
-              <i class="icon icon-star"></i> Stars
169
-              <span class="count">&ndash;</span>
170
-            </a>
171
-          </li>
172
-        </ul>
173
-        <hr>
174
-      
175
-
176
-      <div class="toc">
177
-        
178
-        <ul>
179
-          
180
-
181
-
182
-
183
-
184
-<li>
185
-  
186
-    
187
-
188
-
189
-
190
-<a  title="ggtree" href="./">
191
-	
192
-	ggtree
193
-</a>
194
-
195
-
196
-
197
-  
198
-</li>
199
-
200
-
201
-
202
-<li>
203
-  
204
-    
205
-
206
-
207
-
208
-<a  title="Documentation" href="./documentation/">
209
-	
210
-	Documentation
211
-</a>
212
-
213
-
214
-
215
-  
216
-</li>
217
-
218
-
219
-
220
-<li>
221
-  
222
-    
223
-
224
-
225
-
226
-<a  title="FAQ" href="./faq/">
227
-	
228
-	FAQ
229
-</a>
230
-
231
-
232
-
233
-  
234
-</li>
235
-
236
-
237
-
238
-<li>
239
-  
240
-    
241 15
 
16
+    <meta name="description" content="Visualization and annotation of phylogenetic trees.">
242 17
 
18
+    <link rel="canonical" href="https://guangchuangyu.github.io/ggtree/">
243 19
 
244
-<a  title="Featured Articles" href="./featured-articles/">
245
-	
246
-	Featured Articles
247
-</a>
248
-
249
-
250
-
251
-  
252
-</li>
253
-
254
-
255
-
256
-<li>
257
-  
258
-    
259
-
260
-
261
-
262
-<a  title="Gallery" href="./gallery/">
263
-	
264
-	Gallery
265
-</a>
266
-
267
-
268
-
269
-  
270
-</li>
271
-
272
-
273
-
274
-<li>
275
-  
276
-    
277
-
278
-
279
-
280
-<a  title="Tweets" href="./tweets/">
281
-	
282
-	Tweets
283
-</a>
284
-
285
-
286
-
287
-  
288
-</li>
289
-
290
-
291
-        </ul>
292
-        
293
-
294
-        
295
-        <hr>
296
-        <span class="section">The author</span>
297
-
298
-        <ul>
299
-          
300
-          <li>
301
-            <a href="https://twitter.com/guangchuangyu" target="_blank" title="@guangchuangyu on Twitter">
302
-              @guangchuangyu on Twitter
303
-            </a>
304
-          </li>
305
-          
306
-
307
-          
308
-          <li>
309
-            <a href="https://github.com/GuangchuangYu" target="_blank" title="@GuangchuangYu on GitHub">
310
-              @GuangchuangYu on GitHub
311
-            </a>
312
-          </li>
313
-          
314
-
315
-          
316
-          <li>
317
-            <a href="https://guangchuangyu.github.io/blog_images/biobabble.jpg" title="关注公众号: biobabble">
318
-              @biobabble on WeChat
319
-            </a>
320
-          </li>
321
-          
322
-
323
-          
324
-          <li>
325
-              <a href="mailto:guangchuangyu@gmail.com" title="Email of guangchuangyu@gmail.com">
326
-                  Contact via email
327
-              </a>
328
-          </li>
329
-          
330
-        </ul>
331
-        
332
-        <center><span class="zaln"><a href="https://guangchuangyu.github.io/2017/11/bmc-journal-protects-paper-of-plagiarism/" class="zb">Plea to against BMC</a></span></center>
333
-        <center><span class="zaln"><a href="https://guangchuangyu.github.io/blog_images/pay_qrcode.png" class="zb">赞赏</a></span></center>
334
-        <div style="width:250px;margin:auto;"><script type="text/javascript" src="//rf.revolvermaps.com/0/0/7.js?i=5qpvv5zz7fp&amp;m=0&amp;c=ff0000&amp;cr1=ffffff&amp;sx=0" async="async"></script></div>
335
-      </div>
336
-    </div>
337
-  </div>
338
-</nav>
339
-
340
-	</div>
341
-
342
-	<article class="article">
343
-		<div class="wrapper">
344
-			
345
-				<h1>ggtree: visualization and annotation of phylogenetic trees </h1>
346
-
347
-				<p><link rel="stylesheet" href="https://guangchuangyu.github.io/css/font-awesome.min.css"> <link rel="stylesheet" href="https://guangchuangyu.github.io/css/academicons.min.css"></p>
348
-<p><img src="https://raw.githubusercontent.com/Bioconductor/BiocStickers/master/ggtree/ggtree.png" height="200" align="right" /></p>
349
-<p><a href="https://bioconductor.org/packages/ggtree"><img src="https://img.shields.io/badge/release%20version-1.10.4-blue.svg?style=flat" alt="releaseVersion" /></a> <a href="https://github.com/guangchuangyu/ggtree"><img src="https://img.shields.io/badge/devel%20version-1.11.5-blue.svg?style=flat" alt="develVersion" /></a> <a href="https://bioconductor.org/packages/stats/bioc/ggtree"><img src="https://img.shields.io/badge/downloads-24849/total-blue.svg?style=flat" alt="total" /></a> <a href="https://bioconductor.org/packages/stats/bioc/ggtree"><img src="https://img.shields.io/badge/downloads-1222/month-blue.svg?style=flat" alt="month" /></a></p>
350
-<p>The <code>ggtree</code> package extending the <em>ggplot2</em> package. It based on grammar of graphics and takes all the good parts of <em>ggplot2</em>. <em>ggtree</em> is designed for not only viewing phylogenetic tree but also displaying annotation data on the tree. <em>ggtree</em> is released within the <a href="https://bioconductor.org/packages/ggtree/">Bioconductor</a> project and the source code is hosted on <a href="https://github.com/GuangchuangYu/ggtree"><i class="fa fa-github fa-lg"></i> GitHub</a>.</p>
351
-<div id="authors" class="section level2">
352
-<h2><i class="fa fa-user"></i> Authors</h2>
353
-<p>Guangchuang Yu and Tommy Tsan-Yuk Lam, School of Public Health, The University of Hong Kong.</p>
354
-</div>
355
-<div id="citation" class="section level2">
356
-<h2><i class="fa fa-book"></i> Citation</h2>
357
-<p>Please cite the following article when using <code>ggtree</code>:</p>
358
-<p><a href="http://dx.doi.org/10.1111/2041-210X.12628"><img src="https://img.shields.io/badge/doi-10.1111/2041--210X.12628-blue.svg?style=flat" alt="doi" /></a> <a href="https://www.altmetric.com/details/10533079"><img src="https://img.shields.io/badge/Altmetric-326-blue.svg?style=flat" alt="Altmetric" /></a> <a href="https://scholar.google.com.hk/scholar?oi=bibs&amp;hl=en&amp;cites=7268358477862164627"><img src="https://img.shields.io/badge/cited%20by-85-blue.svg?style=flat" alt="citation" /></a></p>
359
-<p><strong>G Yu</strong>, DK Smith, H Zhu, Y Guan, TTY Lam<sup>*</sup>. ggtree: an R package for visualization and annotation of phylogenetic trees with their covariates and other associated data. <strong><em>Methods in Ecology and Evolution</em></strong>. 2017, 8(1):28-36.</p>
360
-</div>
361
-<div id="featured-articles" class="section level2">
362
-<h2><i class="fa fa-pencil"></i> Featured Articles</h2>
363
-<div class="figure">
364
-<img src="https://guangchuangyu.github.io/featured_img/ggtree/2015_peiyu_1-s2.0-S1567134815300721-gr1.jpg" />
365
-
366
-</div>
367
-<p><i class="fa fa-hand-o-right"></i> Find out more on <i class="fa fa-pencil"></i> <a href="https://guangchuangyu.github.io/ggtree/featuredArticles/">Featured Articles</a>.</p>
368
-</div>
369
-<div id="installation" class="section level2">
370
-<h2><i class="fa fa-download"></i> Installation</h2>
371
-<p>Install <code>ggtree</code> is easy, follow the guide on the <a href="https://bioconductor.org/packages/ggtree/">Bioconductor page</a>:</p>
372
-<pre class="r"><code>## try http:// if https:// URLs are not supported
373
-source(&quot;https://bioconductor.org/biocLite.R&quot;)
374
-## biocLite(&quot;BiocUpgrade&quot;) ## you may need this
375
-biocLite(&quot;ggtree&quot;)</code></pre>
376
-<p>If you have problems when installing some of the dependent packages, please refer to the <a href="https://github.com/GuangchuangYu/ggtree/wiki/ggtree-installation">ggtree-installation</a> wiki page.</p>
377
-</div>
378
-<div id="overview" class="section level2">
379
-<h2><i class="fa fa-cogs"></i> Overview</h2>
380
-<div id="getting-tree-into-r" class="section level4">
381
-<h4><i class="fa fa-angle-double-right"></i> Getting tree into R</h4>
382
-<ul>
383
-<li>tree parsers: bring evolution evidences to be used/analyzed in <code>R</code></li>
384
-<li><code>merge_tree</code>: allows evolution evidences to be merged and compared</li>
385
-<li><code>fortify</code> methods: convert tree objects into tidy data frame</li>
386
-</ul>
387
-</div>
388
-<div id="tree-visualization-annotation" class="section level4">
389
-<h4><i class="fa fa-angle-double-right"></i> Tree visualization &amp; annotation</h4>
390
-<ul>
391
-<li>parsing tree as a collection of nodes allows grammar of graphics to be supported</li>
392
-<li><code>geom_tree</code>: extends <code>ggplot2</code> to support tree structure</li>
393
-<li>several layers and functions for tree annotation</li>
394
-<li>supports annotating phylogenetic trees with user’s own data</li>
395
-</ul>
396
-</div>
397
-<div id="tree-manipulation" class="section level4">
398
-<h4><i class="fa fa-angle-double-right"></i> Tree manipulation</h4>
399
-<ul>
400
-<li>helper functions for tree manipulation, make it possible to explore the tree visually</li>
401
-</ul>
402
-<p><i class="fa fa-hand-o-right"></i> Find out details and examples on <i class="fa fa-book"></i> <a href="https://guangchuangyu.github.io/ggtree/documentation/">Documentation</a>.</p>
403
-</div>
404
-</div>
405
-<div id="projects-that-depend-on-ggtree" class="section level2">
406
-<h2><i class="fa fa-code-fork"></i> Projects that depend on <em>ggtree</em></h2>
407
-<div id="cran-packages" class="section level4">
408
-<h4><i class="fa fa-angle-double-right"></i> CRAN packages</h4>
409
-<ul>
410
-<li><a href="https://cran.r-project.org/package=harrietr">harrietr</a>: Wrangle Phylogenetic Distance Matrices and Other Utilities</li>
411
-</ul>
412
-</div>
413
-<div id="bioconductor-packages" class="section level4">
414
-<h4><i class="fa fa-angle-double-right"></i> Bioconductor packages</h4>
415
-<ul>
416
-<li><a href="https://www.bioconductor.org/packages/LINC">LINC</a>: co-expression of lincRNAs and protein-coding genes</li>
417
-<li><a href="https://www.bioconductor.org/packages/LymphoSeq">LymphoSeq</a>: Analyze high-throughput sequencing of T and B cell receptors</li>
418
-<li><a href="https://www.bioconductor.org/packages/philr">philr</a>: Phylogenetic partitioning based ILR transform for metagenomics data</li>
419
-</ul>
420
-</div>
421
-<div id="other-applications" class="section level4">
422
-<h4><i class="fa fa-angle-double-right"></i> Other applications</h4>
423
-<ul>
424
-<li><a href="https://bitbucket.org/biobakery/breadcrumbs">BreadCrumbs</a>: Collection of scripts for metagenomics analysis</li>
425
-<li><a href="https://github.com/esnapd/DegeneratePrimerTools">DegeneratePrimerTools</a>: Utilities for Creating and Validating Degenerate primers</li>
426
-<li><a href="https://github.com/olli0601/phyloscan">phyloscan</a>: scan phylogenies created along a genome for patterns</li>
427
-</ul>
428
-</div>
429
-</div>
430
-<div id="feedback" class="section level2">
431
-<h2><i class="fa fa-comments"></i> Feedback</h2>
432
-<ul class="fa-ul">
433
-<li>
434
-<i class="fa-li fa fa-hand-o-right"></i> Please make sure you have followed <a href="https://guangchuangyu.github.io/2016/07/how-to-bug-author/"><strong>the important guide</strong></a> before posting any issue/question
435
-</li>
436
-<li>
437
-<i class="fa-li fa fa-bug"></i> For bugs or feature requests, please post to <i class="fa fa-github-alt"></i> <a href="https://github.com/GuangchuangYu/ggtree/issues">github issue</a>
438
-</li>
439
-<li>
440
-<i class="fa-li fa fa-question"></i> For user questions, please post to <i class="fa fa-google"></i> <a href="https://groups.google.com/forum/#!forum/bioc-ggtree">google group</a>
441
-</li>
442
-<li>
443
-<i class="fa-li fa fa-support"></i> We are also following every post tagged with <strong>ggtree</strong> on <a href="https://support.bioconductor.org">Bioconductor support site</a> and <a href="https://www.biostars.org">Biostars</a>
444
-</li>
445
-<li>
446
-<i class="fa-li fa fa-commenting"></i> Join the group chat on <a href="https://twitter.com/hashtag/ggtree"><i class="fa fa-twitter fa-lg"></i></a> and <a href="http://huati.weibo.com/k/ggtree"><i class="fa fa-weibo fa-lg"></i></a>
447
-</li>
448
-</ul>
449
-</div>
450
-
451
-			
452
-
453
-			<aside class="copyright" role="note">
454
-				
455
-				&copy; 2018 Released under the Artistic-2.0 license &ndash;
456
-				
457
-				Documentation built with
458
-				<a href="https://www.gohugo.io" target="_blank">Hugo</a>
459
-				using the
460
-				<a href="http://github.com/digitalcraftsman/hugo-material-docs" target="_blank">Material</a> theme.
461
-			</aside>
462
-
463
-			<footer class="footer">
464
-				
465
-
466
-
467
-
468
-<nav class="pagination" aria-label="Footer">
469
-  <div class="previous">
470
-  </div>
471
-
472
-  
473
-  
474
-
475
-  <div class="next">
476
-      <a href="https://guangchuangyu.github.io/ggtree/documentation/" title="Documentation">
477
-        <span class="direction">
478
-          Next
479
-        </span>
480
-        <div class="page">
481
-          <div class="stretch">
482
-            <div class="title">
483
-              Documentation
484
-            </div>
485
-          </div>
486
-          <div class="button button-next" role="button" aria-label="Next">
487
-            <i class="icon icon-forward"></i>
488
-          </div>
489
-        </div>
490
-      </a>
491
-  </div>
492
-</nav>
493
-
494
-
495
-
496
-			</footer>
497
-		</div>
498
-	</article>
499
-
500
-	<div class="results" role="status" aria-live="polite">
501
-		<div class="scrollable">
502
-			<div class="wrapper">
503
-				<div class="meta"></div>
504
-				<div class="list"></div>
505
-			</div>
506
-		</div>
507
-	</div>
508
-</main>
509
-
510
-    <script>
511
-    
512
-      var base_url = 'https:\/\/guangchuangyu.github.io\/ggtree\/';
513
-      var repo_id  = 'GuangchuangYu\/ggtree';
514
-    
515
-    </script>
516
-
517
-    <script src="https://guangchuangyu.github.io/ggtree/javascripts/application.js"></script>
518
-    
519
-
520
-    <script>
521
-      /* Add headers to scrollspy */
522
-      var headers   = document.getElementsByTagName("h2");
523
-      var scrollspy = document.getElementById('scrollspy');
524
-
525
-      if(scrollspy) {
526
-        if(headers.length > 0) {
527
-          for(var i = 0; i < headers.length; i++) {
528
-            var li = document.createElement("li");
529
-            li.setAttribute("class", "anchor");
530
-
531
-            var a  = document.createElement("a");
532
-            a.setAttribute("href", "#" + headers[i].id);
533
-            a.setAttribute("title", headers[i].innerHTML);
534
-            a.innerHTML = headers[i].innerHTML;
535
-
536
-            li.appendChild(a)
537
-            scrollspy.appendChild(li);
538
-          }
539
-        } else {
540
-          scrollspy.parentElement.removeChild(scrollspy)
541
-        }
542
-
543
-
544
-        /* Add permanent link next to the headers */
545
-        var headers = document.querySelectorAll("h1, h2, h3, h4, h5, h6");
546
-
547
-        for(var i = 0; i < headers.length; i++) {
548
-            var a = document.createElement("a");
549
-            a.setAttribute("class", "headerlink");
550
-            a.setAttribute("href", "#" + headers[i].id);
551
-            a.setAttribute("title", "Permanent link")
552
-            a.innerHTML = " ";
553
-            headers[i].appendChild(a);
554
-        }
555
-      }
556
-    </script>
557
-
558
-    
559
-      <script>
560
-        (function(i,s,o,g,r,a,m){
561
-          i['GoogleAnalyticsObject']=r;i[r]=i[r]||function(){(i[r].q=i[r].q||
562
-          []).push(arguments)},i[r].l=1*new Date();a=s.createElement(o),
563
-          m=s.getElementsByTagName(o)[0];a.async=1;a.src=g;
564
-          m.parentNode.insertBefore(a,m)
565
-        })(window, document,
566
-          'script', '//www.google-analytics.com/analytics.js', 'ga');
567
-         
568
-        ga('create', 'UA-77901140-1', 'auto');
569
-        ga('set', 'anonymizeIp', true);
570
-        ga('send', 'pageview');
571
-         
572
-        var buttons = document.querySelectorAll('a');
573
-        Array.prototype.map.call(buttons, function(item) {
574
-          if (item.host != document.location.host) {
575
-            item.addEventListener('click', function() {
576
-              var action = item.getAttribute('data-action') || 'follow';
577
-              ga('send', 'event', 'outbound', action, item.href);
578
-            });
579
-          }
580
-        });
581
-         
582
-        var query = document.querySelector('.query');
583
-        query.addEventListener('blur', function() {
584
-          if (this.value) {
585
-            var path = document.location.pathname;
586
-            ga('send', 'pageview', path + '?q=' + this.value);
587
-          }
588
-        });
589
-      </script>
590
-    
20
+    <meta name="author" content="Guangchuang Yu">
591 21
 
592
-    <script src="//cdnjs.cloudflare.com/ajax/libs/highlight.js/9.8.0/highlight.min.js"></script>
593
-    <script>hljs.initHighlightingOnLoad();</script>
22
+    <meta http-equiv="refresh" content="0; url=https://guangchuangyu.github.io/software/ggtree/" />
594 23
   </body>
595 24
 </html>
596 25