1. ggtree
  2. Commit 15ebf734decb40c64b6043b59f7d329444079fc7
Browse code

update

guangchuang yu authored on 25/07/2017 12:11:15
Showing 19 changed files
docs/categories/index.xml
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 <?xml version="1.0" encoding="utf-8" standalone="yes" ?>
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 <rss version="2.0" xmlns:atom="http://www.w3.org/2005/Atom">
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   <channel>
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-    <title>Categories on ggtree - Guangchuang Yu</title>
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+    <title>Categories on ggtree</title>
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     <link>https://guangchuangyu.github.io/ggtree/categories/</link>
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-    <description>Recent content in Categories on ggtree - Guangchuang Yu</description>
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+    <description>Recent content in Categories on ggtree</description>
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     <generator>Hugo -- gohugo.io</generator>
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     <language>en-us</language>
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     <copyright>Released under the Artistic-2.0 license</copyright>
docs/documentation/index.html
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     <meta charset="utf-8">
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     <meta http-equiv="X-UA-Compatible" content="IE=10" />
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     <meta property="og:url" content="https://guangchuangyu.github.io/ggtree/documentation/">
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-    <meta property="og:title" content="ggtree - Guangchuang Yu">
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     <meta property="og:image" content="https://guangchuangyu.github.io/ggtree/images/gc.png">
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-        <strong>ggtree - Guangchuang Yu </strong>
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           <br>
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docs/documentation/index.xml
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 <?xml version="1.0" encoding="utf-8" standalone="yes" ?>
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 <rss version="2.0" xmlns:atom="http://www.w3.org/2005/Atom">
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   <channel>
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-    <title>Documentations on ggtree - Guangchuang Yu</title>
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     <link>https://guangchuangyu.github.io/ggtree/documentation/</link>
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-    <description>Recent content in Documentations on ggtree - Guangchuang Yu</description>
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     <generator>Hugo -- gohugo.io</generator>
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     <language>en-us</language>
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     <copyright>Released under the Artistic-2.0 license</copyright>
docs/faq/index.html
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     <meta property="og:url" content="https://guangchuangyu.github.io/ggtree/faq/">
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     <meta property="og:image" content="https://guangchuangyu.github.io/ggtree/images/gc.png">
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     <meta name="apple-mobile-web-app-capable" content="yes">
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     <meta name="apple-mobile-web-app-status-bar-style" content="black-translucent">
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         </div>
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       <div class="name">
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-        <strong>ggtree - Guangchuang Yu </strong>
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           <br>
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docs/faq/index.xml
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 <?xml version="1.0" encoding="utf-8" standalone="yes" ?>
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 <rss version="2.0" xmlns:atom="http://www.w3.org/2005/Atom">
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   <channel>
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-    <title>Faqs on ggtree - Guangchuang Yu</title>
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     <link>https://guangchuangyu.github.io/ggtree/faq/</link>
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-    <description>Recent content in Faqs on ggtree - Guangchuang Yu</description>
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     <generator>Hugo -- gohugo.io</generator>
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     <language>en-us</language>
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     <copyright>Released under the Artistic-2.0 license</copyright>
docs/featured-articles/index.html
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     <meta charset="utf-8">
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     <meta property="og:url" content="https://guangchuangyu.github.io/ggtree/featured-articles/">
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     <meta property="og:image" content="https://guangchuangyu.github.io/ggtree/images/gc.png">
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     <meta name="apple-mobile-web-app-capable" content="yes">
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     <meta name="apple-mobile-web-app-status-bar-style" content="black-translucent">
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         </div>
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       <div class="name">
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           <br>
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           GuangchuangYu/ggtree
docs/featured-articles/index.xml
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 <rss version="2.0" xmlns:atom="http://www.w3.org/2005/Atom">
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   <channel>
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-    <title>Featured-articles on ggtree - Guangchuang Yu</title>
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+    <title>Featured-articles on ggtree</title>
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     <link>https://guangchuangyu.github.io/ggtree/featured-articles/</link>
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-    <description>Recent content in Featured-articles on ggtree - Guangchuang Yu</description>
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     <generator>Hugo -- gohugo.io</generator>
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     <language>en-us</language>
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     <copyright>Released under the Artistic-2.0 license</copyright>
docs/gallery/index.html
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     <meta property="og:url" content="https://guangchuangyu.github.io/ggtree/gallery/">
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     <meta property="og:image" content="https://guangchuangyu.github.io/ggtree/images/gc.png">
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     <meta name="apple-mobile-web-app-capable" content="yes">
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     <meta name="apple-mobile-web-app-status-bar-style" content="black-translucent">
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         </div>
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       <div class="name">
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           <br>
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           GuangchuangYu/ggtree
docs/gallery/index.xml
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 <?xml version="1.0" encoding="utf-8" standalone="yes" ?>
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 <rss version="2.0" xmlns:atom="http://www.w3.org/2005/Atom">
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   <channel>
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-    <title>Galleries on ggtree - Guangchuang Yu</title>
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     <link>https://guangchuangyu.github.io/ggtree/gallery/</link>
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-    <description>Recent content in Galleries on ggtree - Guangchuang Yu</description>
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+    <description>Recent content in Galleries on ggtree</description>
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     <generator>Hugo -- gohugo.io</generator>
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     <language>en-us</language>
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     <copyright>Released under the Artistic-2.0 license</copyright>
docs/index.html
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     <meta charset="utf-8">
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-    <title>ggtree - Guangchuang Yu</title>
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     <meta name="generator" content="Hugo 0.21" />
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     <meta property="og:url" content="https://guangchuangyu.github.io/ggtree/">
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-    <meta property="og:title" content="ggtree - Guangchuang Yu">
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     <meta property="og:image" content="https://guangchuangyu.github.io/ggtree/images/gc.png">
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-    <meta name="apple-mobile-web-app-title" content="ggtree - Guangchuang Yu">
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     <meta name="apple-mobile-web-app-capable" content="yes">
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     <meta name="apple-mobile-web-app-status-bar-style" content="black-translucent">
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     <script src="https://guangchuangyu.github.io/ggtree/javascripts/modernizr.js"></script>
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-    <link href="https://guangchuangyu.github.io/ggtree/index.xml" rel="alternate" type="application/rss+xml" title="ggtree - Guangchuang Yu" />
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-    <link href="https://guangchuangyu.github.io/ggtree/index.xml" rel="feed" type="application/rss+xml" title="ggtree - Guangchuang Yu" />
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+    <link href="https://guangchuangyu.github.io/ggtree/index.xml" rel="alternate" type="application/rss+xml" title="ggtree" />
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+    <link href="https://guangchuangyu.github.io/ggtree/index.xml" rel="feed" type="application/rss+xml" title="ggtree" />
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   </head>
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     </div>
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     <div class="stretch">
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       <div class="title">
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-        ggtree - Guangchuang Yu
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+        ggtree
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       </div>
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     </div>
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         </div>
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       <div class="name">
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-        <strong>ggtree - Guangchuang Yu </strong>
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           <br>
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           GuangchuangYu/ggtree
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 				<h1>ggtree: visualization and annotation of phylogenetic trees </h1>
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-				<p><img src="https://raw.githubusercontent.com/Bioconductor/BiocStickers/master/ggtree/ggtree.png" height="200" align="right" /></p>
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-<p><link rel="stylesheet" href="https://guangchuangyu.github.io/css/font-awesome.min.css"> <link rel="stylesheet" href="https://guangchuangyu.github.io/css/academicons.min.css"></p>
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+				<p><link rel="stylesheet" href="https://guangchuangyu.github.io/css/font-awesome.min.css"> <link rel="stylesheet" href="https://guangchuangyu.github.io/css/academicons.min.css"></p>
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+<p><img src="https://raw.githubusercontent.com/Bioconductor/BiocStickers/master/ggtree/ggtree.png" height="200" align="right" /></p>
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 <p><a href="https://bioconductor.org/packages/ggtree"><img src="https://img.shields.io/badge/release%20version-1.8.1-blue.svg?style=flat" /></a> <a href="https://github.com/guangchuangyu/ggtree"><img src="https://img.shields.io/badge/devel%20version-1.9.2-blue.svg?style=flat" /></a> <a href="https://bioconductor.org/packages/stats/bioc/ggtree"><img src="https://img.shields.io/badge/download-17269/total-blue.svg?style=flat" /></a> <a href="https://bioconductor.org/packages/stats/bioc/ggtree"><img src="https://img.shields.io/badge/download-885/month-blue.svg?style=flat" /></a></p>
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 <p>The <code>ggtree</code> package extending the <em>ggplot2</em> package. It based on grammar of graphics and takes all the good parts of <em>ggplot2</em>. <em>ggtree</em> is designed for not only viewing phylogenetic tree but also displaying annotation data on the tree. <em>ggtree</em> is released within the <a href="https://bioconductor.org/packages/ggtree/">Bioconductor</a> project and the source code is hosted on <a href="https://github.com/GuangchuangYu/ggtree"><i class="fa fa-github fa-lg"></i> GitHub</a>.</p>
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 <div id="authors" class="section level2">
docs/index.rmd
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 ---
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-date: 2017-07-08T21:07:13+01:00
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+date: 2017-07-06T12:08:13+01:00
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 title: 'ggtree: visualization and annotation of phylogenetic trees'
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 type: index
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 weight: 1
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-```{r echo=FALSE, results="hide", message=FALSE}
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-library("ypages")
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-```
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+<link rel="stylesheet" href="https://guangchuangyu.github.io/css/font-awesome.min.css">
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+<link rel="stylesheet" href="https://guangchuangyu.github.io/css/academicons.min.css">
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-<img src="https://raw.githubusercontent.com/Bioconductor/BiocStickers/master/ggtree/ggtree.png" height="200" align="right" />
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+<img src="https://raw.githubusercontent.com/Bioconductor/BiocStickers/master/ggtree/ggtree.png" height="200" align="right" />
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-<link rel="stylesheet" href="https://guangchuangyu.github.io/css/font-awesome.min.css">
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-<link rel="stylesheet" href="https://guangchuangyu.github.io/css/academicons.min.css">
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+```{r echo=FALSE, results="hide", message=FALSE}
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+library("ypages")
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+```
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 `r badge_bioc_release("ggtree", "blue")`
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 `r badge_devel("guangchuangyu/ggtree", "blue")`
docs/index.xml
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 <?xml version="1.0" encoding="utf-8" standalone="yes" ?>
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 <rss version="2.0" xmlns:atom="http://www.w3.org/2005/Atom">
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   <channel>
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     <link>https://guangchuangyu.github.io/ggtree/</link>
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-    <description>Recent content on ggtree - Guangchuang Yu</description>
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     <generator>Hugo -- gohugo.io</generator>
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     <language>en-us</language>
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     <copyright>Released under the Artistic-2.0 license</copyright>
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-    <lastBuildDate>Sat, 08 Jul 2017 21:07:13 +0100</lastBuildDate>
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+    <lastBuildDate>Thu, 06 Jul 2017 12:08:13 +0100</lastBuildDate>
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       <title>ggtree: visualization and annotation of phylogenetic trees</title>
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       <link>https://guangchuangyu.github.io/ggtree/</link>
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+      <pubDate>Thu, 06 Jul 2017 12:08:13 +0100</pubDate>
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       <guid>https://guangchuangyu.github.io/ggtree/</guid>
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       <description>The ggtree package extending the ggplot2 package. It based on grammar of graphics and takes all the good parts of ggplot2. ggtree is designed for not only viewing phylogenetic tree but also displaying annotation data on the tree. ggtree is released within the Bioconductor project and the source code is hosted on  GitHub.
docs/sitemap.xml
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docs/tags/index.xml
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     <link>https://guangchuangyu.github.io/ggtree/tags/</link>
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-    <description>Recent content in Tags on ggtree - Guangchuang Yu</description>
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     <generator>Hugo -- gohugo.io</generator>
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     <language>en-us</language>
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docs/tweets/index.html
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     <link>https://guangchuangyu.github.io/ggtree/tweets/</link>
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site_src/config.toml
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 baseurl = "https://guangchuangyu.github.io/ggtree/"
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 languageCode = "en-us"
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 theme = "hugo-material-docs"
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 metadataformat = "yaml"
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 canonifyurls = true
site_src/content/index.html
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 ---
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-date: 2017-07-08T21:07:13+01:00
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+date: 2017-07-06T12:08:13+01:00
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 title: 'ggtree: visualization and annotation of phylogenetic trees'
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 type: index
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 weight: 1
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-<p><img src="https://raw.githubusercontent.com/Bioconductor/BiocStickers/master/ggtree/ggtree.png" height="200" align="right" /></p>
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 <p><link rel="stylesheet" href="https://guangchuangyu.github.io/css/font-awesome.min.css"> <link rel="stylesheet" href="https://guangchuangyu.github.io/css/academicons.min.css"></p>
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+<p><img src="https://raw.githubusercontent.com/Bioconductor/BiocStickers/master/ggtree/ggtree.png" height="200" align="right" /></p>
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 <p><a href="https://bioconductor.org/packages/ggtree"><img src="https://img.shields.io/badge/release%20version-1.8.1-blue.svg?style=flat" /></a> <a href="https://github.com/guangchuangyu/ggtree"><img src="https://img.shields.io/badge/devel%20version-1.9.2-blue.svg?style=flat" /></a> <a href="https://bioconductor.org/packages/stats/bioc/ggtree"><img src="https://img.shields.io/badge/download-17269/total-blue.svg?style=flat" /></a> <a href="https://bioconductor.org/packages/stats/bioc/ggtree"><img src="https://img.shields.io/badge/download-885/month-blue.svg?style=flat" /></a></p>
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 <p>The <code>ggtree</code> package extending the <em>ggplot2</em> package. It based on grammar of graphics and takes all the good parts of <em>ggplot2</em>. <em>ggtree</em> is designed for not only viewing phylogenetic tree but also displaying annotation data on the tree. <em>ggtree</em> is released within the <a href="https://bioconductor.org/packages/ggtree/">Bioconductor</a> project and the source code is hosted on <a href="https://github.com/GuangchuangYu/ggtree"><i class="fa fa-github fa-lg"></i> GitHub</a>.</p>
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 <div id="authors" class="section level2">
site_src/content/index.rmd
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 ---
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-date: 2017-07-08T21:07:13+01:00
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+date: 2017-07-06T12:08:13+01:00
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 title: 'ggtree: visualization and annotation of phylogenetic trees'
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 type: index
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 weight: 1
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-```{r echo=FALSE, results="hide", message=FALSE}
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-library("ypages")
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-```
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+<link rel="stylesheet" href="https://guangchuangyu.github.io/css/font-awesome.min.css">
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+<link rel="stylesheet" href="https://guangchuangyu.github.io/css/academicons.min.css">
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-<img src="https://raw.githubusercontent.com/Bioconductor/BiocStickers/master/ggtree/ggtree.png" height="200" align="right" />
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+<img src="https://raw.githubusercontent.com/Bioconductor/BiocStickers/master/ggtree/ggtree.png" height="200" align="right" />
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-<link rel="stylesheet" href="https://guangchuangyu.github.io/css/font-awesome.min.css">
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-<link rel="stylesheet" href="https://guangchuangyu.github.io/css/academicons.min.css">
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+```{r echo=FALSE, results="hide", message=FALSE}
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+library("ypages")
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+```
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 `r badge_bioc_release("ggtree", "blue")`
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 `r badge_devel("guangchuangyu/ggtree", "blue")`