| ... | ... |
@@ -79,6 +79,7 @@ export(nodepie) |
| 79 | 79 |
export(open_tree) |
| 80 | 80 |
export(phylopic) |
| 81 | 81 |
export(range_format) |
| 82 |
+export(read.astral) |
|
| 82 | 83 |
export(read.beast) |
| 83 | 84 |
export(read.codeml) |
| 84 | 85 |
export(read.codeml_mlc) |
| ... | ... |
@@ -222,6 +223,7 @@ importFrom(treeio,Nnode) |
| 222 | 223 |
importFrom(treeio,Ntip) |
| 223 | 224 |
importFrom(treeio,as.phylo) |
| 224 | 225 |
importFrom(treeio,as.treedata) |
| 226 |
+importFrom(treeio,read.astral) |
|
| 225 | 227 |
importFrom(treeio,read.beast) |
| 226 | 228 |
importFrom(treeio,read.codeml) |
| 227 | 229 |
importFrom(treeio,read.codeml_mlc) |
| ... | ... |
@@ -1,6 +1,6 @@ |
| 1 | 1 |
# ggtree 1.11.6 |
| 2 | 2 |
|
| 3 |
-+ reexport `treeio::read.iqtree` (2018-04-17, Tue) |
|
| 3 |
++ reexport `treeio::read.iqtree` & `treeio::read.astral`(2018-04-17, Tue) |
|
| 4 | 4 |
+ now geom_treescale will plot the text that can **always** be separated from |
| 5 | 5 |
the bar (2018-03-07, Wed) |
| 6 | 6 |
+ optimize daylight layout |
| ... | ... |
@@ -33,6 +33,8 @@ |
| 33 | 33 |
\alias{reexports}
|
| 34 | 34 |
\alias{geom_point}
|
| 35 | 35 |
\alias{reexports}
|
| 36 |
+\alias{read.astral}
|
|
| 37 |
+\alias{reexports}
|
|
| 36 | 38 |
\alias{read.beast}
|
| 37 | 39 |
\alias{reexports}
|
| 38 | 40 |
\alias{read.codeml}
|
| ... | ... |
@@ -77,6 +79,6 @@ below to see their documentation. |
| 77 | 79 |
|
| 78 | 80 |
\item{tidytree}{\code{\link[tidytree]{groupOTU}}, \code{\link[tidytree]{groupClade}}}
|
| 79 | 81 |
|
| 80 |
- \item{treeio}{\code{\link[treeio]{read.beast}}, \code{\link[treeio]{read.codeml}}, \code{\link[treeio]{read.codeml_mlc}}, \code{\link[treeio]{read.hyphy}}, \code{\link[treeio]{read.iqtree}}, \code{\link[treeio]{read.jplace}}, \code{\link[treeio]{read.jtree}}, \code{\link[treeio]{read.mrbayes}}, \code{\link[treeio]{read.newick}}, \code{\link[treeio]{read.nhx}}, \code{\link[treeio]{read.paml_rst}}, \code{\link[treeio]{read.phylip}}, \code{\link[treeio]{read.phyloT}}, \code{\link[treeio]{read.r8s}}, \code{\link[treeio]{read.raxml}}}
|
|
| 82 |
+ \item{treeio}{\code{\link[treeio]{read.astral}}, \code{\link[treeio]{read.beast}}, \code{\link[treeio]{read.codeml}}, \code{\link[treeio]{read.codeml_mlc}}, \code{\link[treeio]{read.hyphy}}, \code{\link[treeio]{read.iqtree}}, \code{\link[treeio]{read.jplace}}, \code{\link[treeio]{read.jtree}}, \code{\link[treeio]{read.mrbayes}}, \code{\link[treeio]{read.newick}}, \code{\link[treeio]{read.nhx}}, \code{\link[treeio]{read.paml_rst}}, \code{\link[treeio]{read.phylip}}, \code{\link[treeio]{read.phyloT}}, \code{\link[treeio]{read.r8s}}, \code{\link[treeio]{read.raxml}}}
|
|
| 81 | 83 |
}} |
| 82 | 84 |
|
