@@ -1,7 +1,7 @@

 Package: ggtree

 Type: Package

 Title: an R package for visualization of tree and annotation data

-Version: 2.5.0.993

+Version: 2.5.1

 Authors@R: c(

        person("Guangchuang", "Yu",     email = "guangchuangyu@gmail.com", role = c("aut", "cre", "cph"), comment = c(ORCID = "0000-0002-6485-8781")),

        person("Tommy Tsan-Yuk", "Lam", email = "tylam.tommy@gmail.com",   role = c("aut", "ths")),

@@ -4,6 +4,8 @@ PKGSRC  := $(shell basename `pwd`)

 all: rd check clean

+for-release: rd check-dontrun clean readme

+

 alldocs: rd readme

 rd:

@@ -33,6 +35,10 @@ check: rd build

 	cd ..;\

 	Rscript -e "rcmdcheck::rcmdcheck('$(PKGNAME)_$(PKGVERS).tar.gz')"

+check-dontrun: build

+	cd ..;\

+	Rscript -e 'rcmdcheck::rcmdcheck("$(PKGNAME)_$(PKGVERS).tar.gz", args=c("--run-dontrun"))'

+

 check2: rd build

 	cd ..;\

 	R CMD check $(PKGNAME)_$(PKGVERS).tar.gz

@@ -1,4 +1,4 @@

-# ggtree 2.5.0.993

+# ggtree 2.5.1

 + update man file of `geom_rootpoint` (2021-01-08, Fri)

 + `label` and `offset.label` introduced in `geom_treescale` layer (2020-12-23, Wed)

@@ -1,18 +1,19 @@

 <!-- README.md is generated from README.Rmd. Please edit that file -->

-# ggtree: an R package for visualization of phylogenetic trees with their annotation data

+ggtree: an R package for visualization of phylogenetic trees with their annotation data

+=======================================================================================

 <a href="https://yulab-smu.github.io/treedata-book/"><img src="https://raw.githubusercontent.com/Bioconductor/BiocStickers/master/ggtree/ggtree.png" height="200" align="right" /></a>

 [![platform](http://www.bioconductor.org/shields/availability/devel/ggtree.svg)](https://www.bioconductor.org/packages/devel/bioc/html/ggtree.html#archives)

-[![](https://img.shields.io/badge/release%20version-2.2.4-green.svg)](https://www.bioconductor.org/packages/ggtree)

+[![](https://img.shields.io/badge/release%20version-2.4.1-green.svg)](https://www.bioconductor.org/packages/ggtree)

 [![codecov](https://codecov.io/gh/GuangchuangYu/ggtree/branch/master/graph/badge.svg)](https://codecov.io/gh/GuangchuangYu/ggtree)

 [![Awesome](https://cdn.rawgit.com/sindresorhus/awesome/d7305f38d29fed78fa85652e3a63e154dd8e8829/media/badge.svg)](https://awesome-r.com/#awesome-r-graphic-displays)

 <!--

 [![Project Status: Active - The project has reached a stable, usable state and is being actively developed.](http://www.repostatus.org/badges/latest/active.svg)](http://www.repostatus.org/#active)

 [![Bioc](http://www.bioconductor.org/shields/years-in-bioc/ggtree.svg)](https://www.bioconductor.org/packages/devel/bioc/html/ggtree.html#since)

-[![Last-changedate](https://img.shields.io/badge/last%20change-2020--08--27-green.svg)](https://github.com/GuangchuangYu/ggtree/commits/master)

+[![Last-changedate](https://img.shields.io/badge/last%20change-2021--01--08-green.svg)](https://github.com/GuangchuangYu/ggtree/commits/master)

 ` r badge_devel("guangchuangyu/ggtree", "green")`

 ` r badge_bioc_download("ggtree", "total", "blue")`

@@ -25,15 +26,17 @@ grammar of graphics. ‘ggtree’ is designed for visualization and

 annotation of phylogenetic trees and other tree-like structures with

 their annotation data.

-For details, please visit <https://yulab-smu.top/treedata-book/>.

+For details, please visit

+<a href="https://yulab-smu.top/treedata-book/" class="uri">https://yulab-smu.top/treedata-book/</a>.

-## :writing\_hand: Authors

+:writing\_hand: Authors

+-----------------------

 Guangchuang YU

 School of Basic Medical Sciences, Southern Medical University

-<https://guangchuangyu.github.io>

+<a href="https://guangchuangyu.github.io" class="uri">https://guangchuangyu.github.io</a>

 [![Twitter](https://img.shields.io/twitter/url/http/shields.io.svg?style=social&logo=twitter)](https://twitter.com/intent/tweet?hashtags=ggtree&url=http://onlinelibrary.wiley.com/doi/10.1111/2041-210X.12628/abstract&screen_name=guangchuangyu)

 [![saythanks](https://img.shields.io/badge/say-thanks-ff69b4.svg)](https://saythanks.io/to/GuangchuangYu)

@@ -46,14 +49,14 @@ list:

 1.  **G Yu**. Using ggtree to visualize data on tree-like structures.

     ***Current Protocols in Bioinformatics***, 2020, 69:e96. doi:

     [10.1002/cpbi.96](https://doi.org/10.1002/cpbi.96).

-      - [Source code and data to reproduce figures in the

+    -   [Source code and data to reproduce figures in the

         article](https://github.com/GuangchuangYu/ggtree-current-protocols)

 2.  **G Yu**<sup>\*</sup>, TTY Lam, H Zhu, Y Guan<sup>\*</sup>. Two

     methods for mapping and visualizing associated data on phylogeny

     using ggtree. ***Molecular Biology and Evolution***, 2018,

     35(2):3041-3043. doi:

     [10.1093/molbev/msy194](https://doi.org/10.1093/molbev/msy194).

-      - [Source code to produce Supplementary

+    -   [Source code to produce Supplementary

         Material](https://github.com/GuangchuangYu/plotting_tree_with_data)

 3.  **G Yu**, DK Smith, H Zhu, Y Guan, TTY Lam<sup>\*</sup>. ggtree: an

     R package for visualization and annotation of phylogenetic trees

@@ -61,8 +64,9 @@ list:

     Ecology and Evolution***. 2017, 8(1):28-36. doi:

     [10.1111/2041-210X.12628](https://doi.org/10.1111/2041-210X.12628).

-## :sparkling\_heart: Contributing

+:sparkling\_heart: Contributing

+-------------------------------

-We welcome any contributions\! By participating in this project you

-agree to abide by the terms outlined in the [Contributor Code of

+We welcome any contributions! By participating in this project you agree

+to abide by the terms outlined in the [Contributor Code of

 Conduct](CONDUCT.md).