# Generated by roxygen2: do not edit by hand

S3method(fortify,multiPhylo)
S3method(fortify,obkData)
S3method(fortify,phylo)
S3method(fortify,phylo4)
S3method(fortify,phylo4d)
S3method(fortify,phyloseq)
S3method(fortify,treedata)
S3method(groupClade,ggtree)
S3method(groupOTU,ggtree)
S3method(identify,gg)
export("%+>%")
export("%<%")
export("%<+%")
export("%>%")
export(.)
export(Date2decimal)
export(GeomHilight)
export(MRCA)
export(StatBalance)
export(StatHilight)
export(add_colorbar)
export(aes)
export(annotation_image)
export(as.polytomy)
export(collapse)
export(decimal2Date)
export(expand)
export(facet_plot)
export(flip)
export(geom_aline)
export(geom_balance)
export(geom_cladelabel)
export(geom_cladelabel2)
export(geom_hilight)
export(geom_hilight_encircle)
export(geom_label)
export(geom_label2)
export(geom_motif)
export(geom_nodelab)
export(geom_nodepoint)
export(geom_point)
export(geom_point2)
export(geom_range)
export(geom_rootpoint)
export(geom_segment2)
export(geom_strip)
export(geom_taxalink)
export(geom_text)
export(geom_text2)
export(geom_tiplab)
export(geom_tiplab2)
export(geom_tippoint)
export(geom_tree)
export(geom_tree2)
export(geom_treescale)
export(get.offspring.tip)
export(get.path)
export(get_balance_position)
export(get_clade_position)
export(get_heatmap_column_position)
export(get_taxa_name)
export(ggsave)
export(ggtree)
export(gheatmap)
export(groupClade)
export(groupOTU)
export(gzoom)
export(inset)
export(msaplot)
export(multiplot)
export(nodebar)
export(nodeid)
export(nodepie)
export(open_tree)
export(phylopic)
export(range_format)
export(read.tree)
export(reroot)
export(rescale_tree)
export(revts)
export(rotate)
export(rotate_tree)
export(rtree)
export(scaleClade)
export(scale_color)
export(scale_x_ggtree)
export(set_hilight_legend)
export(stat_balance)
export(stat_hilight)
export(subview)
export(theme)
export(theme_inset)
export(theme_tree)
export(theme_tree2)
export(viewClade)
export(xlim)
export(xlim_expand)
export(xlim_tree)
exportMethods(gzoom)
exportMethods(reroot)
exportMethods(scale_color)
importFrom(ape,di2multi)
importFrom(ape,extract.clade)
importFrom(ape,getMRCA)
importFrom(ape,ladderize)
importFrom(ape,read.tree)
importFrom(ape,reorder.phylo)
importFrom(ape,rtree)
importFrom(dplyr,full_join)
importFrom(dplyr,mutate_)
importFrom(ggplot2,Geom)
importFrom(ggplot2,GeomCurve)
importFrom(ggplot2,GeomLabel)
importFrom(ggplot2,GeomPoint)
importFrom(ggplot2,GeomRect)
importFrom(ggplot2,GeomSegment)
importFrom(ggplot2,GeomText)
importFrom(ggplot2,Stat)
importFrom(ggplot2,aes)
importFrom(ggplot2,aes_)
importFrom(ggplot2,aes_string)
importFrom(ggplot2,annotate)
importFrom(ggplot2,annotation_custom)
importFrom(ggplot2,coord_cartesian)
importFrom(ggplot2,coord_flip)
importFrom(ggplot2,coord_polar)
importFrom(ggplot2,draw_key_path)
importFrom(ggplot2,draw_key_point)
importFrom(ggplot2,draw_key_text)
importFrom(ggplot2,element_blank)
importFrom(ggplot2,element_line)
importFrom(ggplot2,element_rect)
importFrom(ggplot2,facet_grid)
importFrom(ggplot2,fortify)
importFrom(ggplot2,geom_bar)
importFrom(ggplot2,geom_blank)
importFrom(ggplot2,geom_label)
importFrom(ggplot2,geom_point)
importFrom(ggplot2,geom_rect)
importFrom(ggplot2,geom_segment)
importFrom(ggplot2,geom_text)
importFrom(ggplot2,geom_tile)
importFrom(ggplot2,ggplot)
importFrom(ggplot2,ggplotGrob)
importFrom(ggplot2,ggplot_build)
importFrom(ggplot2,ggproto)
importFrom(ggplot2,ggsave)
importFrom(ggplot2,guide_legend)
importFrom(ggplot2,guides)
importFrom(ggplot2,last_plot)
importFrom(ggplot2,layer)
importFrom(ggplot2,position_nudge)
importFrom(ggplot2,scale_color_manual)
importFrom(ggplot2,scale_fill_discrete)
importFrom(ggplot2,scale_fill_gradient)
importFrom(ggplot2,scale_fill_manual)
importFrom(ggplot2,scale_x_continuous)
importFrom(ggplot2,scale_x_date)
importFrom(ggplot2,scale_x_reverse)
importFrom(ggplot2,scale_y_continuous)
importFrom(ggplot2,theme)
importFrom(ggplot2,theme_bw)
importFrom(ggplot2,xlab)
importFrom(ggplot2,xlim)
importFrom(ggplot2,ylab)
importFrom(ggplot2,ylim)
importFrom(grDevices,colorRampPalette)
importFrom(graphics,identify)
importFrom(grid,convertX)
importFrom(grid,convertY)
importFrom(grid,dataViewport)
importFrom(grid,gpar)
importFrom(grid,grid.layout)
importFrom(grid,grid.locator)
importFrom(grid,grid.newpage)
importFrom(grid,grobTree)
importFrom(grid,pushViewport)
importFrom(grid,rasterGrob)
importFrom(grid,rectGrob)
importFrom(grid,unit)
importFrom(grid,viewport)
importFrom(magrittr,"%<>%")
importFrom(magrittr,"%>%")
importFrom(magrittr,equals)
importFrom(methods,is)
importFrom(methods,missingArg)
importFrom(methods,setGeneric)
importFrom(methods,setOldClass)
importFrom(rvcheck,get_fun_from_pkg)
importFrom(scales,alpha)
importFrom(tibble,data_frame)
importFrom(tidyr,gather)
importFrom(tidytree,as_data_frame)
importFrom(tidytree,get_tree_data)
importFrom(tidytree,groupClade)
importFrom(tidytree,groupOTU)
importFrom(treeio,Nnode)
importFrom(treeio,Ntip)
importFrom(treeio,as.phylo)
importFrom(treeio,as.treedata)
importFrom(treeio,read.fasta)
importFrom(utils,modifyList)
importFrom(utils,packageDescription)
importFrom(utils,packageVersion)