##' reroot a tree ##' ##' ##' @rdname reroot-methods ##' @exportMethod reroot setMethod("reroot", signature(object="phylo"), function(object, node, ...) { pos <- 0.5* object$edge.length[which(object$edge[,2] == node)] ## @importFrom phytools reroot phytools <- "phytools" require(phytools, character.only = TRUE) phytools_reroot <- eval(parse(text="phytools::reroot")) tree <- phytools_reroot(object, node, pos) attr(tree, "reroot") <- TRUE node_map <- reroot_node_mapping(object, tree) attr(tree, "node_map") <- node_map return(tree) })