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# ggtree: an R package for visualization and annotation of phylogenetic trees with their covariates and other associated data
[](https://www.bioconductor.org/packages/devel/bioc/html/ggtree.html#archives)
[](https://bioconductor.org/checkResults/devel/bioc-LATEST/ggtree/)
[](https://travis-ci.org/GuangchuangYu/ggtree)
[](https://ci.appveyor.com/project/GuangchuangYu/ggtree)
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[](http://bioconda.github.io/recipes/bioconductor-ggtree/README.html)
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[; y=x[grep("^Version", x)]; sub("Version: ", "", y)`-green.svg?style=flat)](https://github.com/GuangchuangYu/ggtree/blob/master/DESCRIPTION)
[](https://www.bioconductor.org/packages/devel/bioc/html/ggtree.html#since)
[](https://support.bioconductor.org/t/ggtree/)
[](https://bioconductor.org/packages/stats/bioc/ggtree/)
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[)`-green.svg)](https://github.com/GuangchuangYu/ggtree/commits/master)
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[](https://www.bioconductor.org/packages/devel/bioc/html/ggtree.html#svn_source)
[](https://github.com/GuangchuangYu/ggtree/network)
[](https://github.com/GuangchuangYu/ggtree/stargazers)
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The `ggtree` package extending the `ggplot2` package. It based on grammar of graphics and takes all the good parts of `ggplot2`. `ggtree` is designed for not only viewing phylogenetic tree but also displaying annotation data on the tree.
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Please cite the following article when using `ggtree`:
__G Yu__, DK Smith, H Zhu, Y Guan, TTY Lam^\*^. ggtree: an R package for visualization and annotation of phylogenetic trees with their covariates and other associated data. __*Methods in Ecology and Evolution*__. _accepted_
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For details, please visit our project website, <https://guangchuangyu.github.io/ggtree>.
+ [Documentation](https://guangchuangyu.github.io/ggtree/documentation/)
+ [FAQ](https://guangchuangyu.github.io/ggtree/faq/)
+ [Feedback](https://guangchuangyu.github.io/ggtree/#feedback)
+ [Example](https://guangchuangyu.github.io/ggtree/featuredArticles/)
[](https://guangchuangyu.github.io/ggtree/featuredArticles/)
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