3e4b5998 | % Generated by roxygen2: do not edit by hand % Please edit documentation in R/phangorn.R \name{phyPML} \alias{phyPML} \title{treeAnno.pml} \usage{ phyPML(pmlTree, type = "ml") } \arguments{ \item{pmlTree}{tree in pml object, output of phangorn::optim.pml} \item{type}{one of 'ml' and 'bayes' for inferring ancestral sequences} } \value{ phangorn object } \description{ tree annotation of sequence substitution by comparing to parent node } \author{ Yu Guangchuang } |