# Generated by roxygen2: do not edit by hand

 S3method(MRCA,gg)

 S3method(collapse,ggtree)

 S3method(fortify,multiPhylo)

 S3method(fortify,obkData)

 S3method(fortify,phylo)
 S3method(fortify,phylo4)

 S3method(fortify,phylo4d)

 S3method(fortify,phyloseq)

 S3method(fortify,treedata)

 S3method(ggplot_add,facet_plot)

 S3method(ggplot_add,facet_xlim)

 S3method(ggplot_add,scale_ggtree)

 S3method(groupClade,ggtree)
 S3method(groupOTU,ggtree)

 S3method(identify,gg)

 export("%+>%")

 export("%<%")
 export("%<+%")

 export("%>%")

 export(.)

 export(Date2decimal)

 export(GeomHilight)

 export(StatBalance)

 export(StatHilight)

 export(add_colorbar)

 export(aes)

 export(annotation_image)

 export(as.polytomy)

 export(collapse)

 export(decimal2Date)

 export(expand)

 export(facet_labeller)

 export(facet_plot)

 export(facet_widths)

 export(flip)

 export(fortify)

 export(geom_aline)

 export(geom_balance)

 export(geom_cladelabel)

 export(geom_cladelabel2)

 export(geom_facet)

 export(geom_hilight)

 export(geom_hilight_encircle)

 export(geom_label)

 export(geom_label2)

 export(geom_motif)

 export(geom_nodelab)

 export(geom_nodelab2)

 export(geom_nodepoint)

 export(geom_point)

 export(geom_point2)

 export(geom_range)

 export(geom_rootedge)

 export(geom_rootpoint)

 export(geom_segment2)

 export(geom_strip)

 export(geom_taxalink)

 export(geom_text)

 export(geom_text2)

 export(geom_tiplab)

 export(geom_tiplab2)

 export(geom_tippoint)
 export(geom_tree)

 export(geom_tree2)

 export(geom_treescale)

 export(get.path)

 export(get_balance_position)

 export(get_clade_position)
 export(get_heatmap_column_position)

 export(get_taxa_name)

 export(ggplot)

 export(ggsave)

 export(ggtree)

 export(gheatmap)

 export(groupClade)
 export(groupOTU)

 export(gzoom)

 export(inset)

 export(msaplot)

 export(multiplot)

 export(nodebar)

 export(nodeid)

 export(nodepie)

 export(open_tree)

 export(phylopic)

 export(range_format)

 export(read.astral)

 export(read.beast)
 export(read.codeml)
 export(read.codeml_mlc)
 export(read.hyphy)

 export(read.iqtree)

 export(read.jplace)
 export(read.jtree)
 export(read.mrbayes)
 export(read.newick)
 export(read.nexus)
 export(read.nhx)
 export(read.paml_rst)
 export(read.phylip)
 export(read.phyloT)
 export(read.r8s)
 export(read.raxml)

 export(read.tree)

 export(revts)

 export(rotate)

 export(rotate_tree)

 export(rtree)

 export(scaleClade)

 export(scale_color)

 export(scale_x_ggtree)

 export(set_hilight_legend)

 export(stat_balance)

 export(stat_hilight)

 export(subview)

 export(theme)

 export(theme_inset)

 export(theme_tree)
 export(theme_tree2)

 export(viewClade)

 export(xlim)

 export(xlim_expand)

 export(xlim_tree)

 exportMethods(gzoom)

 exportMethods(scale_color)

 importFrom(ape,di2multi)

 importFrom(ape,ladderize)

 importFrom(ape,read.nexus)

 importFrom(ape,read.tree)
 importFrom(ape,reorder.phylo)

 importFrom(ape,rtree)

 importFrom(dplyr,collapse)

 importFrom(dplyr,full_join)

 importFrom(dplyr,mutate_)

 importFrom(ggplot2,Geom)

 importFrom(ggplot2,GeomCurve)

 importFrom(ggplot2,GeomLabel)

 importFrom(ggplot2,GeomPoint)
 importFrom(ggplot2,GeomRect)
 importFrom(ggplot2,GeomSegment)
 importFrom(ggplot2,GeomText)
 importFrom(ggplot2,Stat)

 importFrom(ggplot2,aes)

 importFrom(ggplot2,aes_)

 importFrom(ggplot2,aes_string)
 importFrom(ggplot2,annotate)

 importFrom(ggplot2,annotation_custom)

 importFrom(ggplot2,coord_cartesian)

 importFrom(ggplot2,coord_flip)
 importFrom(ggplot2,coord_polar)

 importFrom(ggplot2,draw_key_path)
 importFrom(ggplot2,draw_key_point)
 importFrom(ggplot2,draw_key_text)

 importFrom(ggplot2,element_blank)
 importFrom(ggplot2,element_line)
 importFrom(ggplot2,element_rect)

 importFrom(ggplot2,facet_grid)

 importFrom(ggplot2,fortify)

 importFrom(ggplot2,geom_bar)

 importFrom(ggplot2,geom_blank)

 importFrom(ggplot2,geom_label)
 importFrom(ggplot2,geom_point)

 importFrom(ggplot2,geom_rect)

 importFrom(ggplot2,geom_segment)
 importFrom(ggplot2,geom_text)
 importFrom(ggplot2,geom_tile)
 importFrom(ggplot2,ggplot)

 importFrom(ggplot2,ggplotGrob)

 importFrom(ggplot2,ggplot_add)

 importFrom(ggplot2,ggplot_build)

 importFrom(ggplot2,ggplot_gtable)

 importFrom(ggplot2,ggproto)

 importFrom(ggplot2,ggsave)

 importFrom(ggplot2,guide_legend)
 importFrom(ggplot2,guides)

 importFrom(ggplot2,labeller)

 importFrom(ggplot2,last_plot)

 importFrom(ggplot2,layer)
 importFrom(ggplot2,position_nudge)

 importFrom(ggplot2,scale_color_manual)

 importFrom(ggplot2,scale_fill_discrete)

 importFrom(ggplot2,scale_fill_gradient)

 importFrom(ggplot2,scale_fill_manual)

 importFrom(ggplot2,scale_x_continuous)

 importFrom(ggplot2,scale_x_date)

 importFrom(ggplot2,scale_x_reverse)

 importFrom(ggplot2,scale_y_continuous)

 importFrom(ggplot2,theme)
 importFrom(ggplot2,theme_bw)

 importFrom(ggplot2,waiver)

 importFrom(ggplot2,xlab)

 importFrom(ggplot2,xlim)

 importFrom(ggplot2,ylab)

 importFrom(ggplot2,ylim)

 importFrom(graphics,identify)
 importFrom(grid,convertX)
 importFrom(grid,convertY)
 importFrom(grid,dataViewport)

 importFrom(grid,gpar)

 importFrom(grid,grid.layout)

 importFrom(grid,grid.locator)

 importFrom(grid,grid.newpage)

 importFrom(grid,grobTree)

 importFrom(grid,pushViewport)

 importFrom(grid,rasterGrob)

 importFrom(grid,rectGrob)

 importFrom(grid,unit)
 importFrom(grid,viewport)

 importFrom(magrittr,"%<>%")
 importFrom(magrittr,"%>%")
 importFrom(magrittr,equals)

 importFrom(methods,is)
 importFrom(methods,missingArg)

 importFrom(methods,setGeneric)

 importFrom(methods,setOldClass)

 importFrom(rlang,.data)

 importFrom(rlang,quo_name)

 importFrom(rvcheck,get_aes_var)

 importFrom(rvcheck,get_fun_from_pkg)

 importFrom(tidyr,gather)

 importFrom(tidytree,MRCA)

 importFrom(tidytree,ancestor)

 importFrom(tidytree,as_tibble)

 importFrom(tidytree,groupClade)
 importFrom(tidytree,groupOTU)

 importFrom(tidytree,offspring)

 importFrom(tidytree,parent)

 importFrom(treeio,Nnode)
 importFrom(treeio,Ntip)

 importFrom(treeio,as.phylo)

 importFrom(treeio,as.treedata)

 importFrom(treeio,read.astral)

 importFrom(treeio,read.beast)
 importFrom(treeio,read.codeml)
 importFrom(treeio,read.codeml_mlc)

 importFrom(treeio,read.fasta)

 importFrom(treeio,read.hyphy)

 importFrom(treeio,read.iqtree)

 importFrom(treeio,read.jplace)
 importFrom(treeio,read.jtree)
 importFrom(treeio,read.mrbayes)
 importFrom(treeio,read.newick)
 importFrom(treeio,read.nhx)
 importFrom(treeio,read.paml_rst)
 importFrom(treeio,read.phylip)
 importFrom(treeio,read.phyloT)
 importFrom(treeio,read.r8s)
 importFrom(treeio,read.raxml)

 importFrom(utils,modifyList)

 importFrom(utils,packageDescription)

 importFrom(utils,packageVersion)