| 2dba0a46 |
PKGNAME := $(shell sed -n "s/Package: *\([^ ]*\)/\1/p" DESCRIPTION)
PKGVERS := $(shell sed -n "s/Version: *\([^ ]*\)/\1/p" DESCRIPTION)
PKGSRC := $(shell basename `pwd`)
all: rd readme check clean
alldocs: rd readme mkdocs
rd:
Rscript -e 'roxygen2::roxygenise(".")'
readme:
Rscript -e 'rmarkdown::render("README.Rmd")'
|
| 2d18b912 |
sticker:
Rscript -e 'source("ggtree_sticker.R")';
rm Rplots.pdf
|
| 2dba0a46 |
build:
cd ..;\
R CMD build $(PKGSRC)
build2:
cd ..;\
R CMD build --no-build-vignettes $(PKGSRC)
install:
cd ..;\
R CMD INSTALL $(PKGNAME)_$(PKGVERS).tar.gz
check: build
cd ..;\
Rscript -e 'rcmdcheck::rcmdcheck("$(PKGNAME)_$(PKGVERS).tar.gz")'
check2: build
cd ..;\
R CMD check $(PKGNAME)_$(PKGVERS).tar.gz
bioccheck:
cd ..;\
Rscript -e 'BiocCheck::BiocCheck("$(PKGNAME)_$(PKGVERS).tar.gz")'
clean:
cd ..;\
$(RM) -r $(PKGNAME).Rcheck/
|
| 69ce6809 |
site:
cd site_src;\
Rscript -e 'blogdown::build_site()';\
cd ..
|
| 2dba0a46 |
mkdocs: mdfiles
cd mkdocs;\
mkdocs build;\
cd ../docs;\
rm -rf fonts;\
|
| 0bef8892 |
rm -rf css/font-awesome*
|
| d91c5b7f |
|
| 2dba0a46 |
mdfiles:
cd mkdocs;\
|
| 975b531a |
Rscript -e 'source("render.R")';\
|
| 2dba0a46 |
cd docs;\
|
| 6fe12e67 |
ln -f -s ../mysoftware/* ./
|
| 2dba0a46 |
svnignore:
svn propset svn:ignore -F .svnignore .
svncommit:
git checkout devel;\
git svn rebase;\
git merge master --log;\
git svn dcommit;\
|
| c039b05a |
git push -u origin devel;\
|
| 2dba0a46 |
git checkout master;\
git merge devel
|
| 3c4c8dcf |
|
| b80c900e |
|
| 3c4c8dcf |
gitmaintain:
git gc --auto;\
git prune -v;\
git fsck --full
|
| b80c900e |
push:
git push -u origin master;\
git checkout bioc;\
git merge master;\
git push upstream master;\
git checkout master
|
