| 2dba0a46 |
PKGNAME := $(shell sed -n "s/Package: *\([^ ]*\)/\1/p" DESCRIPTION)
PKGVERS := $(shell sed -n "s/Version: *\([^ ]*\)/\1/p" DESCRIPTION)
PKGSRC := $(shell basename `pwd`)
|
| 0266c285 |
all: rd check clean
|
| 2dba0a46 |
|
| deb8e67d |
alldocs: rd readme
|
| 2dba0a46 |
rd:
|
| 99048963 |
Rscript -e 'library(methods); devtools::document()'
# Rscript -e 'roxygen2::roxygenise(".")'
|
| 2dba0a46 |
readme:
|
| 18618ecb |
Rscript -e 'rmarkdown::render("README.Rmd", encoding="UTF-8")'
|
| 2dba0a46 |
|
| 2d18b912 |
sticker:
Rscript -e 'source("ggtree_sticker.R")';
rm Rplots.pdf
|
| 2dba0a46 |
build:
cd ..;\
R CMD build $(PKGSRC)
build2:
cd ..;\
R CMD build --no-build-vignettes $(PKGSRC)
install:
cd ..;\
R CMD INSTALL $(PKGNAME)_$(PKGVERS).tar.gz
|
| 99048963 |
check: rd build
|
| 2dba0a46 |
cd ..;\
|
| e97f14c3 |
Rscript -e "rcmdcheck::rcmdcheck('$(PKGNAME)_$(PKGVERS).tar.gz')"
|
| 2dba0a46 |
|
| 99048963 |
check2: rd build
|
| 2dba0a46 |
cd ..;\
R CMD check $(PKGNAME)_$(PKGVERS).tar.gz
|
| 6be958c5 |
check3: rd build2
cd ..;\
R CMD check --ignore-vignettes $(PKGNAME)_$(PKGVERS).tar.gz
|
| 2dba0a46 |
bioccheck:
cd ..;\
|
| e97f14c3 |
Rscript -e "BiocCheck::BiocCheck('$(PKGNAME)_$(PKGVERS).tar.gz')"
|
| 2dba0a46 |
clean:
cd ..;\
$(RM) -r $(PKGNAME).Rcheck/
|
| b80c900e |
|
| 3c4c8dcf |
gitmaintain:
git gc --auto;\
git prune -v;\
git fsck --full
|
| b80c900e |
|
| e0740bda |
biocinit:
git remote add upstream git@git.bioconductor.org:packages/$(PKGNAME).git;\
git fetch --all
|
| b57ec7d6 |
giteeinit:
|
| c9910e69 |
git remote add gitee git@gitee.com:GuangchuangYu/$(PKGNAME).git;\
|
| b57ec7d6 |
git fetch --all
|
| c2cfbee3 |
rmoldrelease:
|
| 4e15ce18 |
git branch -D RELEASE_3_11
|
| c2cfbee3 |
|
| ead856b2 |
release:
|
| 4e15ce18 |
git checkout RELEASE_3_12;\
|
| 38cc4744 |
git fetch --all
|
| ead856b2 |
|
| c84682c4 |
update:
git fetch --all;\
git checkout master;\
git merge upstream/master;\
|
| b57ec7d6 |
git merge gitee/master;\
|
| c84682c4 |
git merge origin/master
|
| ead856b2 |
push:
|
| c84682c4 |
git push upstream master;\
|
| b57ec7d6 |
git push gitee master;\
|
| c84682c4 |
git push origin master
|
| 0b103e34 |
# svnignore:
# svn propset svn:ignore -F .svnignore .
# svncommit:
# git checkout devel;\
# git svn rebase;\
# git merge master --log;\
# git svn dcommit;\
# git push -u origin devel;\
# git checkout master;\
# git merge devel
|
