| 2dba0a46 |
PKGNAME := $(shell sed -n "s/Package: *\([^ ]*\)/\1/p" DESCRIPTION)
PKGVERS := $(shell sed -n "s/Version: *\([^ ]*\)/\1/p" DESCRIPTION)
PKGSRC := $(shell basename `pwd`)
all: rd readme check clean
|
| 8a005461 |
alldocs: site rd readme
|
| 2dba0a46 |
rd:
Rscript -e 'roxygen2::roxygenise(".")'
readme:
Rscript -e 'rmarkdown::render("README.Rmd")'
|
| 2d18b912 |
sticker:
Rscript -e 'source("ggtree_sticker.R")';
rm Rplots.pdf
|
| 2dba0a46 |
build:
cd ..;\
R CMD build $(PKGSRC)
build2:
cd ..;\
R CMD build --no-build-vignettes $(PKGSRC)
install:
cd ..;\
R CMD INSTALL $(PKGNAME)_$(PKGVERS).tar.gz
check: build
cd ..;\
Rscript -e 'rcmdcheck::rcmdcheck("$(PKGNAME)_$(PKGVERS).tar.gz")'
check2: build
cd ..;\
R CMD check $(PKGNAME)_$(PKGVERS).tar.gz
bioccheck:
cd ..;\
Rscript -e 'BiocCheck::BiocCheck("$(PKGNAME)_$(PKGVERS).tar.gz")'
clean:
cd ..;\
$(RM) -r $(PKGNAME).Rcheck/
|
| 09d9e070 |
site:
|
| 69ce6809 |
cd site_src;\
|
| 30a6bb41 |
ln -s ../../software/themes themes;\
|
| 69ce6809 |
Rscript -e 'blogdown::build_site()';\
|
| 30a6bb41 |
rm themes;\
|
| 69ce6809 |
cd ..
|
| 2dba0a46 |
|
| 09d9e070 |
preview:
|
| d30f6545 |
cd site_src;\
ln -s ../../software/themes themes;\
Rscript -e 'blogdown::serve_site()';\
rm themes;\
cd ..
|
| 09d9e070 |
|
| b80c900e |
|
| 3c4c8dcf |
gitmaintain:
git gc --auto;\
git prune -v;\
git fsck --full
|
| b80c900e |
|
| c84682c4 |
update:
git fetch --all;\
git checkout master;\
git merge upstream/master;\
git merge origin/master
push: update
git push upstream master;\
git push origin master
|
| 0b103e34 |
# mkdocs: mdfiles
# cd mkdocs;\
# mkdocs build;\
# cd ../docs;\
# rm -rf fonts;\
# rm -rf css/font-awesome*
# mdfiles:
# cd mkdocs;\
# Rscript -e 'source("render.R")';\
# cd docs;\
# ln -f -s ../mysoftware/* ./
# svnignore:
# svn propset svn:ignore -F .svnignore .
# svncommit:
# git checkout devel;\
# git svn rebase;\
# git merge master --log;\
# git svn dcommit;\
# git push -u origin devel;\
# git checkout master;\
# git merge devel
|
