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DESCRIPTION 100644 1 kb
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appveyor.yml 100644 1 kb
# ggtree: a phylogenetic tree viewer for different types of tree annotations <!--[![Build Status](]( [![Build Status](](> [![platform](]( [![Build Status](]( [![Bioc](]( [![post](]( [![commit](]( [![download](]( The `ggtree` package extending the `ggplot2` package. It based on grammar of graphics and takes all the good parts of `ggplot2`. `ggtree` is designed for not only viewing phylogenetic tree but also displaying annotation data in the tree. ## Authors ## Guangchuang Yu and Tommy Tsan-Yuk Lam, School of Public Health, The University of Hong Kong. ## Citation ## Please cite the following article when using `ggtree`: ``` G Yu, D Smith, H Zhu, Y Guan, TTY Lam, ggtree: an R package for visualization and annotation of phylogenetic tree with different types of meta-data. Methods in Ecology and Evolution, submitted ``` ## License ## All source code is copyright, under the Artistic-2.0 License. For more information on Artistic-2.0 License see []( ## Installation ## To install: * the latest released version: `biocLite("ggtree")` * the latest development version: `install_github("GuangchuangYu/ggtree")` ## Documentation ## + [viewing and annotating phylogenetic tree with ggtree]( + [updating a tree view using %<% operator]( + [an example of drawing beast tree using ggtree]( + [flip and rotate branches in ggtree]( + [ggtree with funny fonts]( + [annotate phylogenetic tree with local images]( To view the vignette of `ggtree` installed in your system, start `R` and enter: ```r vignette("ggtree", package = "ggtree") ``` ## Bugs/Feature requests ## - If you have any, [let me know]( Thx!