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ggtree: an R package for visualization and annotation of phylogenetic trees with their covariates and other associated data
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The `ggtree` package extending the `ggplot2` package. It based on grammar of graphics and takes all the good parts of `ggplot2`. `ggtree` is designed for not only viewing phylogenetic tree but also displaying annotation data on the tree.
[](https://twitter.com/intent/tweet?hashtags=ggtree&url=http://onlinelibrary.wiley.com/doi/10.1111/2041-210X.12628/abstract&screen_name=guangchuangyu)
For details, please visit our project website, <https://guangchuangyu.github.io/ggtree>.
- [Documentation](https://guangchuangyu.github.io/ggtree/documentation/)
- [FAQ](https://guangchuangyu.github.io/ggtree/faq/)
- [Featured Articles](https://guangchuangyu.github.io/ggtree/featuredArticles/)
- [Feedback](https://guangchuangyu.github.io/ggtree/#feedback)
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Please cite the following article when using `ggtree`:
**G Yu**, DK Smith, H Zhu, Y Guan, TTY Lam<sup>\*</sup>. ggtree: an R package for visualization and annotation of phylogenetic trees with their covariates and other associated data. ***Methods in Ecology and Evolution***. 2017, 8(1):28-36.
[](http://dx.doi.org/10.1111/2041-210X.12628) [](https://www.altmetric.com/details/10533079)
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### Citation
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### Download stats
[](https://bioconductor.org/packages/stats/bioc/ggtree) [](https://bioconductor.org/packages/stats/bioc/ggtree) [](https://bioconductor.org/packages/stats/bioc/ggtree)
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