<!-- README.md is generated from README.Rmd. Please edit that file --> ggtree: an R package for visualization and annotation of phylogenetic trees with their covariates and other associated data =========================================================================================================================== [](https://bioconductor.org/packages/ggtree) [](https://github.com/GuangchuangYu/ggtree) [](https://www.bioconductor.org/packages/devel/bioc/html/ggtree.html#since) [](https://bioconductor.org/packages/stats/bioc/ggtree) [](https://bioconductor.org/packages/stats/bioc/ggtree) <img src="logo.png" align="right" /> [](http://www.repostatus.org/#active) [](https://codecov.io/gh/GuangchuangYu/ggtree) [](https://github.com/GuangchuangYu/ggtree/commits/master) [](https://github.com/GuangchuangYu/ggtree/network) [](https://github.com/GuangchuangYu/ggtree/stargazers) [](https://awesome-r.com/#awesome-r-graphic-displays) [](https://www.bioconductor.org/packages/devel/bioc/html/ggtree.html#archives) [](https://bioconductor.org/checkResults/devel/bioc-LATEST/ggtree/) [](https://travis-ci.org/GuangchuangYu/ggtree) [](https://ci.appveyor.com/project/GuangchuangYu/ggtree) [](http://bioconda.github.io/recipes/bioconductor-ggtree/README.html) The `ggtree` package extending the `ggplot2` package. It based on grammar of graphics and takes all the good parts of `ggplot2`. `ggtree` is designed for not only viewing phylogenetic tree but also displaying annotation data on the tree. [](https://twitter.com/intent/tweet?hashtags=ggtree&url=http://onlinelibrary.wiley.com/doi/10.1111/2041-210X.12628/abstract&screen_name=guangchuangyu) ------------------------------------------------------------------------ Please cite the following article when using `ggtree`: **G Yu**, DK Smith, H Zhu, Y Guan, TTY Lam^\*. ggtree: an R package for visualization and annotation of phylogenetic trees with their covariates and other associated data. ***Methods in Ecology and Evolution***. 2017, 8(1):28-36. [](http://dx.doi.org/10.1111/2041-210X.12628) [](https://scholar.google.com.hk/scholar?oi=bibs&hl=en&cites=7268358477862164627) [](https://www.altmetric.com/details/10533079) ------------------------------------------------------------------------ For details, please visit our project website, <https://guangchuangyu.github.io/ggtree>. - [Documentation](https://guangchuangyu.github.io/ggtree/documentation/) - [FAQ](https://guangchuangyu.github.io/ggtree/faq/) - [Featured Articles](https://guangchuangyu.github.io/ggtree/featuredArticles/) - [Feedback](https://guangchuangyu.github.io/ggtree/#feedback) ### Citation [](https://scholar.google.com.hk/scholar?oi=bibs&hl=en&cites=7268358477862164627) +-------------+------------+------------+-------------++ | | | | 1.2 + + | | | | 1 + * + | | | | | | 0.8 + + | | | | 0.6 +-------------+------------+------------+-------------++ 2015 2015.5 2016 2016.5 2017 ### Download stats [](https://bioconductor.org/packages/stats/bioc/ggtree) [](https://bioconductor.org/packages/stats/bioc/ggtree) [](https://bioconductor.org/packages/stats/bioc/ggtree) ++---------------------+---------------------+---------------------+---------------------+----+ | * | | | | * | | * | 1500 + + | | | | | * | | * * * | | * * | 1000 + * + | | | * * | | * * | | * * | | | 500 + * + | * * | | * | | * | | | 0 + * * * + ++---------------------+---------------------+---------------------+---------------------+----+ 2015 2015.5 2016 2016.5 2017