## Package
The `genbankr` package is part of the Bioconductor ecosystem of R packages. As
such, it's primary splash page - including continuous integration and testing
badges - can be found [here](https://bioconductor.org/packages/release/bioc/html/genbankr.html).
## Introduction
`genbankr` is a package which provides utilities to parse GenBank and GenPept
files into data structures which integrate with the Bioconductor ecosystem.
## Installation
This package depends on the [Bioconductor](http://bioconductor.org) ecosystem of
R packages. If you already have a version of Bioconductor (>=3.3) installed,
you can do gthe following:
```
libary(BiocManager)
BiocManager::install("genbankr")
```
If you do not currently have the Bioconductor core machinery installed, you can
get the current or release version like so:
```
if (!requireNamespace("BiocManager", quietly=TRUE))
install.packages("BiocManager")
```
for release and
```
if (!requireNamespace("BiocManager", quietly=TRUE))
install.packages("BiocManager")
BiocManager::install(version = "devel")
```
For devel.
After doing one of the above (once), you can install `genbankr` as above, via
```
library(BiocManager)
BiocManager::install("genbankr")
```
Note that Bioconductor is a sychronized development and release
platform, so release and development versions of Bioconductor packages
cannot be safely mixed in the same package (installation) library. Use `switchr`
or direct `.libPaths` management to maintain multiple side-by-side installations
if necessary.
To install directly from github (this will generally not be necessary
unless you intend to contribute to `genbankr`'s development), do
```
if (!requireNamespace("BiocManager", quietly=TRUE))
install.packages("BiocManager")
BiocManager::install(version = "devel")
BiocManager::install("gmbecker/genbankr")
```
The Bioconductor development repository will contain
the latest development version of genbankr which has passed testing (lagged
by about a day).
## Code of Conduct
This project operates under the Contributor Covenenant Code of Coduct [see here](./CONDUCT.md)
## Package Affiliations
The `genbankr` package is a part of the Bioconductor and rOpenSci projects.
| [](http://bioconductor.org) | [](http://ropensci.org) |
|:-------------------------------------------------------------------------------------------------------:|:----------------------------------------------------------------------------------------------:|
