Graph ofgemma.R
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  • 43adbd5 (origin/RELEASE_3_16, RELEASE_3_16) version bump in release by OganM <ogan.mancarcii@gmail.com> 2023-01-24 13:44:40 -0800;
  • 0d9f31b bug fix: processDEA fix for null factor URIs by OganM <ogan.mancarcii@gmail.com> 2023-01-24 13:41:58 -0800;
  • c7f6836 (HEAD -> master, origin/master, origin/HEAD) version bump in devel by OganM <ogan.mancarcii@gmail.com> 2023-01-24 13:42:53 -0800;
  • d30ef5d bug fix: processDEA fix for null factor URIs by OganM <ogan.mancarcii@gmail.com> 2023-01-24 13:41:58 -0800;
  • 78c3dce bump x.y.z version to odd y following creation of RELEASE_3_16 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2022-11-01 11:27:35 -0400;
  • 5be7fec bump x.y.z version to even y prior to creation of RELEASE_3_16 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2022-11-01 11:27:35 -0400;
  • e5ff7a7 append the cheatsheet to the beginning by OganM <ogan.mancarci@gmail.com> 2022-10-26 15:13:33 -0700;
  • 08db23a remove the pdfs by OganM <ogan.mancarci@gmail.com> 2022-10-26 14:53:03 -0700;
  • 205af77 pdf build test by OganM <ogan.mancarci@gmail.com> 2022-10-26 14:44:28 -0700;
  • 396d641 minor by Paul Pavlidis <paul@msl.ubc.ca> 2022-10-25 08:55:24 -0700;
  • 2bc51c8 version bump and news by OganM <ogan.mancarci@gmail.com> 2022-10-24 14:42:13 -0700;
  • 8f53c82 take a few heads by OganM <ogan.mancarci@gmail.com> 2022-10-24 14:33:38 -0700;
  • 8bb1258 vignette fix by OganM <ogan.mancarci@gmail.com> 2022-10-24 14:26:40 -0700;
  • 0a3b1ad added suggests by OganM <ogan.mancarci@gmail.com> 2022-10-24 14:20:46 -0700;
  • f407e26 vignette updates by OganM <ogan.mancarci@gmail.com> 2022-10-24 14:15:42 -0700;
  • c13a33c bugfix by OganM <ogan.mancarci@gmail.com> 2022-10-24 14:15:16 -0700;
  • 201dca9 missing arguments for search_datasets by OganM <ogan.mancarci@gmail.com> 2022-10-24 10:52:21 -0700;
  • ecac02e documentation fix by OganM <ogan.mancarci@gmail.com> 2022-10-24 09:52:13 -0700;
  • 7306c00 readme title update by OganM <ogan.mancarci@gmail.com> 2022-10-24 07:33:34 -0700;
  • c8fcea3 documentation fix by OganM <ogan.mancarci@gmail.com> 2022-10-24 07:07:07 -0700;
  • 52db316 more descriptive title by OganM <ogan.mancarci@gmail.com> 2022-10-24 06:53:01 -0700;
  • e82aa00 fix CI by OganM <ogan.mancarci@gmail.com> 2022-10-24 06:46:00 -0700;
  • b666945 typo fix in docs by OganM <ogan.mancarci@gmail.com> 2022-10-24 06:31:26 -0700;
  • a8f0fd6 test for search_datasets by OganM <ogan.mancarci@gmail.com> 2022-10-24 06:25:41 -0700;
  • 17bcec3 add search_datasets back by OganM <ogan.mancarci@gmail.com> 2022-10-24 06:23:35 -0700;
  • f8debfc version bump by OganM <ogan.mancarci@gmail.com> 2022-10-12 10:46:12 -0700;
  • b2d166e change default test to non-dev by OganM <ogan.mancarci@gmail.com> 2022-10-12 10:45:34 -0700;
  • 4ffce35 version bump by OganM <ogan.mancarci@gmail.com> 2022-10-12 10:34:30 -0700;
  • e735a70 remove more =s by OganM <ogan.mancarci@gmail.com> 2022-10-12 10:32:54 -0700;
  • deefae0 version bump by OganM <ogan.mancarci@gmail.com> 2022-10-12 10:13:19 -0700;
  • bc7c3bd remove = for assign by OganM <ogan.mancarci@gmail.com> 2022-10-12 10:08:03 -0700;
  • ded53a7 man touches by OganM <ogan.mancarci@gmail.com> 2022-10-12 10:07:09 -0700;
  • f0b1e24 missing doc file by OganM <ogan.mancarci@gmail.com> 2022-10-12 10:03:51 -0700;
  • db9a839 Merge pull request <a href="#39">#39</a> from PavlidisLab/current_dev by B. Ogan Mancarc─▒ <ogan.mancarcii@gmail.com> 2022-10-12 00:43:39 +0100;
  • 70c4b10 version bump by OganM <ogan.mancarci@gmail.com> 2022-10-11 16:43:04 -0700;
  • de6ec30 no more building on dev by OganM <ogan.mancarci@gmail.com> 2022-10-11 16:31:38 -0700;
  • 8e5599c version bump by OganM <ogan.mancarci@gmail.com> 2022-10-11 16:30:25 -0700;
  • d5b56cc add test for search_gemma by OganM <ogan.mancarci@gmail.com> 2022-10-11 16:30:09 -0700;
  • 726d8a2 improve search processor by OganM <ogan.mancarci@gmail.com> 2022-10-11 16:24:49 -0700;
  • af88b0e build and document by OganM <ogan.mancarci@gmail.com> 2022-10-11 15:54:46 -0700;
  • fcceecf fix examples in registry by OganM <ogan.mancarci@gmail.com> 2022-10-11 15:54:19 -0700;
  • 447b3cb switch to the new annotation search endpoint by OganM <ogan.mancarci@gmail.com> 2022-10-11 15:54:01 -0700;
  • 03f2d11 use get_dataset_differential_expression_analyses instead of the get_result_sets enpoint when getting differential expression values for a dataset by OganM <ogan.mancarci@gmail.com> 2022-10-06 08:16:15 -0700;
  • a7172da vignette fix by OganM <ogan.mancarci@gmail.com> 2022-10-05 06:25:28 -0700;
  • 40d5318 fixes to tests and overrides by OganM <ogan.mancarci@gmail.com> 2022-10-05 06:10:28 -0700;
  • 4f1b7bd add the multifunctionality rank back to the gene endpoint by OganM <ogan.mancarci@gmail.com> 2022-10-05 06:04:24 -0700;
  • 4a370f3 search_gemma replaces search_datasets by OganM <ogan.mancarci@gmail.com> 2022-10-05 05:59:15 -0700;
  • 65d6562 documentation updates by OganM <ogan.mancarci@gmail.com> 2022-10-05 03:32:34 -0700;
  • 2ffe720 beginnings of the new search endpoint by OganM <ogan.mancarci@gmail.com> 2022-10-05 03:15:54 -0700;
  • 75ed0d3 fix for characteristics and remove isPublic by OganM <ogan.mancarci@gmail.com> 2022-10-04 11:28:54 -0700;
  • fdcfbc4 fix for multi factor contrasts by OganM <ogan.mancarci@gmail.com> 2022-10-04 09:46:34 -0700;
  • 71e58ee incomplete work on processDEA by OganM <ogan.mancarci@gmail.com> 2022-10-03 06:05:31 -0700;
  • e2469a5 test fixes by OganM <ogan.mancarci@gmail.com> 2022-09-30 08:19:10 -0700;
  • ad4a71c more fixes for the taxon change by OganM <ogan.mancarci@gmail.com> 2022-09-30 08:15:55 -0700;
  • 765cfb4 taxon changes by OganM <ogan.mancarci@gmail.com> 2022-09-30 05:11:16 -0700;
  • 65866c8 remove the dev test for now by OganM <ogan.mancarci@gmail.com> 2022-09-29 01:54:18 -0700;
  • 6d7fc36 remove the =s sneaking in by OganM <ogan.mancarci@gmail.com> 2022-09-29 01:53:14 -0700;
  • 3065ef7 version bump by OganM <ogan.mancarci@gmail.com> 2022-09-29 01:41:12 -0700;
  • 964e551 remove evidence codes from annotations by OganM <ogan.mancarci@gmail.com> 2022-09-29 01:37:23 -0700;
  • 280134f fix test by OganM <ogan.mancarci@gmail.com> 2022-09-29 01:22:19 -0700;
  • f8dd18b documentation fixes and removal of jsonlite:::simplify by OganM <ogan.mancarci@gmail.com> 2022-09-29 01:14:14 -0700;
  • 2339504 Merge branch 'master' of github.com:PavlidisLab/gemma.R by OganM <ogan.mancarci@gmail.com> 2022-09-28 23:50:51 -0700;
  • 6847326 switch out the annotation terms by OganM <ogan.mancarci@gmail.com> 2022-09-28 23:50:43 -0700;
  • 0d672f1 get_taxa output is no longer invisible by OganM <ogan.mancarci@gmail.com> 2022-09-28 06:42:16 -0700;
  • 88ecc8b typo fix by OganM <ogan.mancarcii@gmail.com> 2022-09-22 14:06:13 -0700;
  • 1bfe312 test fix by OganM <ogan.mancarci@gmail.com> 2022-09-22 00:36:39 -0700;
  • 78e889a a bit more concrete vignette by OganM <ogan.mancarci@gmail.com> 2022-09-21 23:30:02 -0700;
  • 083be61 Documentation and vignette update by OganM <ogan.mancarci@gmail.com> 2022-09-21 23:24:26 -0700;
  • a09bf8e forgotten comma by OganM <ogan.mancarcii@gmail.com> 2022-09-16 22:39:55 -0700;
  • 6f7c625 tech type isn't populated by OganM <ogan.mancarcii@gmail.com> 2022-09-16 22:37:17 -0700;
  • 1e2a2fb add raw data availability to dataset processing by OganM <ogan.mancarcii@gmail.com> 2022-09-16 22:06:54 -0700;
  • a224f2c clean nulls from gene processing by OganM <ogan.mancarcii@gmail.com> 2022-09-16 21:20:34 -0700;
  • 4a3318a vignette fix by OganM <ogan.mancarcii@gmail.com> 2022-09-16 17:43:36 -0700;
  • 434a2f6 all is not dev by OganM <ogan.mancarcii@gmail.com> 2022-09-16 17:33:31 -0700;
  • de91fa6 test fix by OganM <ogan.mancarcii@gmail.com> 2022-09-16 16:48:54 -0700;
  • 253f4e9 gradual yaml change 3 by OganM <ogan.mancarcii@gmail.com> 2022-09-16 16:43:03 -0700;
  • 475e584 gradual yaml change 2 by OganM <ogan.mancarcii@gmail.com> 2022-09-16 16:42:10 -0700;
  • 3f93c71 gradual yaml change 1 by OganM <ogan.mancarcii@gmail.com> 2022-09-16 16:40:09 -0700;
  • d6b87f3 take it all back by OganM <ogan.mancarcii@gmail.com> 2022-09-16 16:36:53 -0700;
  • 14656a5 attempt workflow fix by OganM <ogan.mancarcii@gmail.com> 2022-09-16 16:35:24 -0700;
  • 281c6df add the dev test by OganM <ogan.mancarcii@gmail.com> 2022-09-16 14:56:59 -0700;
  • e3a4c21 fix for possibly missing columns in expression data closes <a href="#20">#20</a> by OganM <ogan.mancarcii@gmail.com> 2022-09-15 21:47:57 -0700;
  • 22e96cf test fix by OganM <ogan.mancarcii@gmail.com> 2022-09-15 18:40:45 -0700;
  • ddc7a8d more caching tests by OganM <ogan.mancarcii@gmail.com> 2022-09-15 18:30:09 -0700;
  • dcccc75 get_platform_annotations correctly uses in memory caching by OganM <ogan.mancarcii@gmail.com> 2022-09-15 18:15:44 -0700;
  • e565b4e move get_result_sets to internal by OganM <ogan.mancarcii@gmail.com> 2022-09-15 16:40:47 -0700;
  • 28a39fc ad is a platform by OganM <ogan.mancarcii@gmail.com> 2022-09-15 16:34:53 -0700;
  • adda827 replace array with platform for consistency by OganM <ogan.mancarcii@gmail.com> 2022-09-15 16:22:08 -0700;
  • 20f9ae8 a few more detailed titles by OganM <ogan.mancarcii@gmail.com> 2022-09-15 16:07:03 -0700;
  • b7cbd2f Merge branch 'master' of github.com:PavlidisLab/gemma.R by OganM <ogan.mancarcii@gmail.com> 2022-09-15 15:51:23 -0700;
  • 40aa464 use summaries for endpoint titles by OganM <ogan.mancarcii@gmail.com> 2022-09-15 15:51:17 -0700;
  • 84a0d8c remove rsc.id from the differential output by OganM <ogan.mancarci@gmail.com> 2022-09-15 14:55:37 -0700;
  • 617a147 bad ogan by OganM <ogan.mancarcii@gmail.com> 2022-09-15 14:36:00 -0700;
  • a5cb000 silence the global variables note by OganM <ogan.mancarcii@gmail.com> 2022-09-15 14:07:25 -0700;
  • d8e4b34 a weird fix by OganM <ogan.mancarcii@gmail.com> 2022-09-15 13:46:35 -0700;
  • 36b0e3b fix and test in memory caching by OganM <ogan.mancarcii@gmail.com> 2022-09-15 13:26:52 -0700;
  • 2438019 gracefully fail with a warning for empty resultSets by OganM <ogan.mancarci@gmail.com> 2022-09-15 03:40:01 -0700;
  • d825a99 documentation bump and globalVariables fix by OganM <ogan.mancarci@gmail.com> 2022-09-15 02:23:12 -0700;
  • 512045b update tests by OganM <ogan.mancarci@gmail.com> 2022-09-15 01:58:32 -0700;
  • 110b223 update vignette with new names and details by OganM <ogan.mancarci@gmail.com> 2022-09-15 01:27:42 -0700;