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@@ -84,14 +84,14 @@ a specified query containing key words, experiment names or ontology term URIs
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```{r}
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get_taxon_datasets(taxon = 'human') %>% # all human datasets
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- select(experiment.ShortName, experiment.Name,taxon.Name)
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+ select(experiment.ShortName, experiment.Name,taxon.Name) %>% head
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search_datasets('bipolar',taxon = 'human') %>% # human datasets mentioning bipolar
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- select(experiment.ShortName, experiment.Name,taxon.Name)
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+ select(experiment.ShortName, experiment.Name,taxon.Name) %>% head
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search_datasets('http://purl.obolibrary.org/obo/DOID_3312', # ontology term URI for the bipolar disorder
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taxon = 'human') %>%
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- select(experiment.ShortName, experiment.Name,taxon.Name)
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+ select(experiment.ShortName, experiment.Name,taxon.Name) %>% head
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```
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Note that a single call of these functions will only return 20 results by default
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@@ -155,7 +155,7 @@ these and other fields can be found at the function documentation.
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```{r}
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get_taxon_datasets(taxon = 'human') %>% # get human datasets
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filter(geeq.batchEffect !=-1 & experiment.SampleCount > 4) %>% # filter for datasets without batch effects and with a sample count more than 4
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- select(experiment.ShortName, experiment.Name,taxon.Name)
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+ select(experiment.ShortName, experiment.Name,taxon.Name) %>% head
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```
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Gemma uses multiple ontologies when annotating datasets and using the term URIs instead of
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