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take a few heads

OganM authored on 24/10/2022 21:33:38
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@@ -84,14 +84,14 @@ a specified query containing key words, experiment names or ontology term URIs
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 ```{r}
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 get_taxon_datasets(taxon = 'human') %>%  # all human datasets 
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-    select(experiment.ShortName, experiment.Name,taxon.Name)
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+    select(experiment.ShortName, experiment.Name,taxon.Name) %>% head
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 search_datasets('bipolar',taxon = 'human') %>% # human datasets mentioning bipolar
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-    select(experiment.ShortName, experiment.Name,taxon.Name)
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+    select(experiment.ShortName, experiment.Name,taxon.Name) %>% head
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 search_datasets('http://purl.obolibrary.org/obo/DOID_3312', # ontology term URI for the bipolar disorder
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                 taxon = 'human') %>% 
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-    select(experiment.ShortName, experiment.Name,taxon.Name)
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+    select(experiment.ShortName, experiment.Name,taxon.Name) %>% head
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 ```
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 Note that a single call of these functions will only return 20 results by default
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@@ -155,7 +155,7 @@ these and other fields can be found at the function documentation.
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 ```{r}
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 get_taxon_datasets(taxon = 'human') %>% # get human datasets
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     filter(geeq.batchEffect !=-1 & experiment.SampleCount > 4) %>% # filter for datasets without batch effects and with a sample count more than 4
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-    select(experiment.ShortName, experiment.Name,taxon.Name)
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+    select(experiment.ShortName, experiment.Name,taxon.Name) %>% head
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 ```
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 Gemma uses multiple ontologies when annotating datasets and using the term URIs instead of