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  • c859ed1 (HEAD -> master, origin/master, origin/HEAD) update xz-5.2.9 by Xiuwen Zheng <zhengxwen@gmail.com> 2022-12-02 18:38:49 -0600;
  • 51e8acd update LZ4 by Xiuwen Zheng <zhengxwen@gmail.com> 2022-11-22 20:08:14 -0600;
  • 9501d6e bump x.y.z version to odd y following creation of RELEASE_3_16 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2022-11-01 11:10:58 -0400;
  • ab912c3 (origin/RELEASE_3_16, RELEASE_3_16) bump x.y.z version to even y prior to creation of RELEASE_3_16 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2022-11-01 11:10:58 -0400;
  • 1681b1f update NEWS by Xiuwen Zheng <zhengxwen@gmail.com> 2022-10-26 00:00:07 -0500;
  • dcf88bc update web links by Xiuwen Zheng <zhengxwen@gmail.com> 2022-07-15 17:34:14 -0500;
  • a71f957 bump x.y.z version to odd y following creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 15:23:25 +0000;
  • 06f2097 (origin/RELEASE_3_15, RELEASE_3_15) bump x.y.z version to even y prior to creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 15:23:25 +0000;
  • 5a7bcd0 update NEWS by Xiuwen Zheng <zhengxwen@gmail.com> 2022-04-06 18:58:28 -0500;
  • b72c355 sparse R codes by Xiuwen Zheng <zhengxwen@gmail.com> 2022-02-08 02:53:28 -0600;
  • 9abfea3 bump x.y.z version to odd y following creation of RELEASE_3_14 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-10-26 16:18:24 +0000;
  • d27dde6 (origin/RELEASE_3_14, RELEASE_3_14) bump x.y.z version to even y prior to creation of RELEASE_3_14 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-10-26 16:18:24 +0000;
  • c897242 (origin/RELEASE_3_13, RELEASE_3_13) update according to gcc-11 by Xiuwen Zheng <zhengxwen@gmail.com> 2021-09-15 16:23:50 -0500;
  • 409595a work around gcc11 by Xiuwen Zheng <zhengxwen@gmail.com> 2021-09-11 04:28:06 -0500;
  • e3941fa bump x.y.z version to odd y following creation of RELEASE_3_13 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-05-19 16:10:33 +0000;
  • b900c77 bump x.y.z version to even y prior to creation of RELEASE_3_13 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-05-19 16:10:33 +0000;
  • ee1cd28 update NEWS by Xiuwen Zheng <zhengxwen@gmail.com> 2021-05-11 01:01:10 -0500;
  • d8efd1c add rmarkdown by Xiuwen Zheng <zhengxwen@gmail.com> 2021-04-16 22:48:46 -0500;
  • fcca1f5 exist.gdsn() by Xiuwen Zheng <zhengxwen@gmail.com> 2021-02-16 17:39:23 -0600;
  • 260639a attempt to fix by Xiuwen Zheng <zhengxwen@gmail.com> 2021-02-05 21:03:06 -0600;
  • 926b675 fix Makevars.win by Xiuwen Zheng <zhengxwen@gmail.com> 2021-01-27 21:21:03 -0600;
  • f069c54 XZ updated to v5.2.5 by Xiuwen Zheng <zhengxwen@gmail.com> 2021-01-25 00:27:00 -0600;
  • a6a2611 apply.gdsn fix factor by Xiuwen Zheng <zhengxwen@gmail.com> 2021-01-12 21:41:40 -0600;
  • 0d2424c new is.sparse.gdsn() by Xiuwen Zheng <zhengxwen@gmail.com> 2020-12-24 01:29:47 -0600;
  • bd180b2 (origin/RELEASE_3_12, RELEASE_3_12) work with factor variables in R>v4.0.3 by Xiuwen Zheng <zhengxwen@gmail.com> 2020-12-21 17:28:56 -0600;
  • ccfa301 attempt to fix by Xiuwen Zheng <zhengxwen@gmail.com> 2020-12-11 17:24:52 -0600;
  • 5094496 try to fix by Xiuwen Zheng <zhengxwen@gmail.com> 2020-12-08 17:06:53 -0600;
  • da575c3 comply with R devel for factor variables by Xiuwen Zheng <zhengxwen@gmail.com> 2020-11-13 00:13:56 -0600;
  • 2236224 bump x.y.z version to odd y following creation of RELEASE_3_12 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-10-27 11:01:56 -0400;
  • e96b9ff bump x.y.z version to even y prior to creation of RELEASE_3_12 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-10-27 11:01:56 -0400;
  • d7f36ce (origin/RELEASE_3_11, RELEASE_3_11) fix compiler warning by Xiuwen Zheng <zhengxwen@gmail.com> 2020-06-15 16:17:43 -0500;
  • ab3a71f update by Xiuwen Zheng <zhengxwen@gmail.com> 2020-04-29 20:47:28 -0500;
  • b8767ff bump x.y.z version to odd y following creation of RELEASE_3_11 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-04-27 18:46:15 +0000;
  • b48823e bump x.y.z version to even y prior to creation of RELEASE_3_11 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-04-27 18:46:14 +0000;
  • 88939ea tweak print.gds.clear() by Xiuwen Zheng <zhengxwen@gmail.com> 2020-04-26 17:34:20 -0500;
  • 3b89cc9 fix the last commit by Xiuwen Zheng <zhengxwen@gmail.com> 2020-04-25 23:09:14 -0500;
  • 11c35a5 tweak before final BioC release by Xiuwen Zheng <zhengxwen@gmail.com> 2020-04-25 21:38:36 -0500;
  • 2f6c5c2 attempt to fix by Xiuwen Zheng <zhengxwen@gmail.com> 2020-04-18 01:54:49 -0500;
  • bd995cb attemp to fix by Xiuwen Zheng <zhengxwen@gmail.com> 2020-04-16 01:03:16 -0500;
  • 25c019b update unload.gdsn.Rd by Xiuwen Zheng <zhengxwen@gmail.com> 2020-04-13 17:14:18 -0500;
  • baf02ce upate vig by Xiuwen Zheng <zhengxwen@gmail.com> 2020-04-10 18:31:20 -0500;
  • 27c0dde gds file garbage collected by Xiuwen Zheng <zhengxwen@gmail.com> 2020-04-02 19:17:15 -0500;
  • de6c6b6 fix sp matrix with replacing values by Xiuwen Zheng <zhengxwen@gmail.com> 2020-03-30 22:46:41 -0500;
  • 435bdf5 fix C warnings by Xiuwen Zheng <zhengxwen@gmail.com> 2020-03-16 16:17:09 -0500;
  • 174580a new sp by Xiuwen Zheng <zhengxwen@gmail.com> 2020-03-06 14:24:13 -0600;
  • 6eb5180 new C GDS_Node_Unload() & GDS_Node_Load() by Xiuwen Zheng <zhengxwen@gmail.com> 2020-01-14 15:30:19 -0600;
  • 9dad7f5 more information when GDS file crashes by Xiuwen Zheng <zhengxwen@gmail.com> 2020-01-04 21:47:17 -0600;
  • af63045 update xz and lz4 by Xiuwen Zheng <zhengxwen@gmail.com> 2019-12-26 15:31:40 -0600;
  • df760f9 zlib to v1.2.11 by Xiuwen Zheng <zhengxwen@gmail.com> 2019-12-19 01:23:09 -0600;
  • 6f6c3d1 bump x.y.z version to odd y after creation of RELEASE_3_10 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-10-29 13:38:49 -0400;
  • d1a0ec9 (origin/RELEASE_3_10) bump x.y.z version to even y prior to creation of RELEASE_3_10 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-10-29 13:09:08 -0400;
  • 2fc5a05 close-on-exec flag by Xiuwen Zheng <zhengxwen@gmail.com> 2019-10-25 02:02:03 -0500;
  • 814bd0f new function unload.gdsn() by Xiuwen Zheng <zhengxwen@gmail.com> 2019-10-14 14:04:19 -0500;
  • f0933d2 fix segfault if the data type is not registered internally by Xiuwen Zheng <zhengxwen@gmail.com> 2019-06-05 22:24:17 -0500;
  • 9cfe88d bump x.y.z versions to odd y after creation of RELEASE_3_9 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-05-02 12:12:09 -0400;
  • b1fbaba (origin/RELEASE_3_9, RELEASE_3_9) bump x.y.z versions to even y prior to creation of RELEASE_3_9 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-05-02 11:53:52 -0400;
  • f22f269 try to fix TIMEOUT during compiling by Xiuwen Zheng <zhengxwen@gmail.com> 2019-04-25 15:52:46 -0500;
  • 1bbb5ba prepare next BioC release by Xiuwen Zheng <zhengxwen@gmail.com> 2019-04-23 01:13:37 -0500;
  • adb0efe disable function multiversioning by Xiuwen Zheng <zhengxwen@gmail.com> 2019-04-23 01:12:10 -0500;
  • c7ed6cb AVX512 flags and target clones by Xiuwen Zheng <zhengxwen@gmail.com> 2019-03-29 01:19:01 -0500;
  • 845d89c new .pretty_size() by Xiuwen Zheng <zhengxwen@gmail.com> 2019-02-23 21:35:33 -0600;
  • 415ce1a fix add.gdsn(, storage=index.gdsn()) by Xiuwen Zheng <zhengxwen@gmail.com> 2019-01-29 20:38:54 -0600;
  • 663a9c1 packedreal8 optimization + using utf8string internally by Xiuwen Zheng <zhengxwen@gmail.com> 2018-12-22 03:34:39 -0600;
  • 81525e2 fix -Warray-bounds by Xiuwen Zheng <zhengxwen@gmail.com> 2018-12-18 23:09:58 -0600;
  • d0d6ce2 fix -Wstrict-aliasing by Xiuwen Zheng <zhengxwen@gmail.com> 2018-12-16 01:20:34 -0600;
  • 0806979 NOEXCEPT in virtual destructor function by Xiuwen Zheng <zhengxwen@gmail.com> 2018-12-14 10:25:32 -0600;
  • 5159c11 NOEXCEPT in virtual destructor function by Xiuwen Zheng <zhengxwen@gmail.com> 2018-12-12 00:20:39 -0600;
  • 5c75aa2 fix -Wterminate warnings by Xiuwen Zheng <zhengxwen@gmail.com> 2018-12-10 14:18:33 -0600;
  • 8018586 rollback packedreal8 optimization by Xiuwen Zheng <zhengxwen@gmail.com> 2018-12-05 22:59:27 -0600;
  • ef235d4 new data type by Xiuwen Zheng <zhengxwen@gmail.com> 2018-12-04 13:06:36 -0600;
  • b911b95 (origin/RELEASE_3_8, RELEASE_3_8) bug fix: the node name should not contain '/' by Xiuwen Zheng <zhengxwen@gmail.com> 2018-11-26 16:40:22 -0600;
  • 1dac816 bump x.y.z versions to odd y after creation of RELEASE_3_8 branch by vobencha <vobencha@gmail.com> 2018-10-30 11:54:33 -0400;
  • d9c365e bump x.y.z versions to even y prior to creation of RELEASE_3_8 branch by vobencha <vobencha@gmail.com> 2018-10-30 11:41:56 -0400;
  • 060d65a update NEWS by Xiuwen Zheng <zhengxwen@gmail.com> 2018-10-27 01:13:24 -0500;
  • 745f65d a new options 'include.dirs' in ls.gdsn() by Xiuwen Zheng <zhengxwen@gmail.com> 2018-10-16 23:14:27 -0700;
  • 3295673 optimization in 2-bit array decoding by Xiuwen Zheng <zhengxwen@gmail.com> 2018-09-24 16:17:51 -0700;
  • 2c0994d digest.gdsn() fails if the digest package is not installed by Xiuwen Zheng <zhengxwen@gmail.com> 2018-08-31 14:54:55 -0700;
  • e1654d7 replace BiocInstaller biocLite mentions with BiocManager by LiNk-NY <mramos09@gmail.com> 2018-08-30 13:49:12 -0400;
  • 7f8146f bug fixed: put.attr.gdsn() fails to update the existing attribute by Xiuwen Zheng <zhengxwen@gmail.com> 2018-05-15 01:56:28 -0700;
  • 6111863 new option 'recursive' in ls.gdsn() by Xiuwen Zheng <zhengxwen@gmail.com> 2018-05-03 23:57:10 -0700;
  • cd263e7 bump x.y.z versions to odd y after creation of RELEASE_3_7 branch by vobencha <valerie.obenchain@roswellpark.org> 2018-04-30 10:41:40 -0400;
  • 49b0114 (origin/RELEASE_3_7, RELEASE_3_7) bump x.y.z versions to even y prior to creation of RELEASE_3_7 branch by vobencha <valerie.obenchain@roswellpark.org> 2018-04-30 10:35:35 -0400;
  • e126d61 update NEWS by Xiuwen Zheng <zhengxwen@gmail.com> 2018-04-16 12:00:32 -0700;
  • 6ac9ac6 avoid integer overflow when compression ratio is too small by Xiuwen Zheng <zhengxwen@gmail.com> 2018-04-15 15:59:28 -0700;
  • fa35cdf enable lzma_ultra and lzma_ultra_max by Xiuwen Zheng <zhengxwen@gmail.com> 2018-04-13 14:09:24 -0700;
  • 1574364 (origin/RELEASE_3_6, RELEASE_3_6) fix ~ instead of the home directory in cleanup.gds() by Xiuwen Zheng <zhengxwen@gmail.com> 2017-12-16 16:13:23 -0800;
  • 994d6b7 a new storage name 'single' in add.gdsn() by Xiuwen Zheng <zhengxwen@gmail.com> 2017-12-15 15:51:06 -0800;
  • 76f7aa1 bump x.y.z versions to odd y after creation of RELEASE_3_6 branch by Hervé Pagès <hpages@fredhutch.org> 2017-10-30 12:54:01 -0400;
  • 7fb13dc bump x.y.z versions to even y prior to creation of RELEASE_3_6 branch by Hervé Pagès <hpages@fredhutch.org> 2017-10-30 12:40:48 -0400;
  • 795568f update NEWS by Xiuwen Zheng <zhengxwen@gmail.com> 2017-10-10 15:51:07 -0700;
  • 5afecf0 tweak error message by Xiuwen Zheng <zhengxwen@gmail.com> 2017-09-16 22:08:00 -0700;
  • ebcf585 methods in depends (DESCRIPTION) by Xiuwen Zheng <zhengx@u.washington.edu> 2017-08-08 22:54:47 +0000;
  • 3e226a3 bump x.y.z versions to odd y after creation of 3_5 branch by Herve Pages <hpages@fhcrc.org> 2017-04-24 19:50:57 +0000;
  • d705a95 (origin/RELEASE_3_5, RELEASE_3_5) Creating branch for BioC 3.5 release by Herve Pages <hpages@fhcrc.org> 2017-04-24 19:45:44 +0000;
  • 50ccc69 bump x.y.z versions to even y prior to creation of 3_5 branch by Herve Pages <hpages@fhcrc.org> 2017-04-24 19:25:24 +0000;
  • 9ccbb46 bsd-compatibility by Xiuwen Zheng <zhengx@u.washington.edu> 2017-04-24 00:23:39 +0000;
  • d54d85f update NEWS by Xiuwen Zheng <zhengx@u.washington.edu> 2017-04-02 06:26:33 +0000;
  • e9f4acb avoid deprecated values of LZ4 and update CITATION file by Xiuwen Zheng <zhengx@u.washington.edu> 2017-03-23 03:33:12 +0000;
  • 2bc440f avoid deprecated functions by Xiuwen Zheng <zhengx@u.washington.edu> 2017-03-20 08:15:57 +0000;
  • 0cc5598 update liblzma and lz4 by Xiuwen Zheng <zhengx@u.washington.edu> 2017-03-08 21:05:21 +0000;