ad6ce6dbd9 Merge branch 'develop' by
mikejiang <mike@ozette.ai>2022-12-28 17:57:48 -0800;
50c99fb0bf fixed mac seg fault by
mikejiang <mike@ozette.ai>2022-12-28 17:04:41 -0800;
fb34e4c492 bump x.y.z version to odd y following creation of RELEASE_3_16 branch by
J Wokaty <jennifer.wokaty@sph.cuny.edu>2022-11-01 11:05:55 -0400;
45fa973cdc bump x.y.z version to even y prior to creation of RELEASE_3_16 branch by
J Wokaty <jennifer.wokaty@sph.cuny.edu>2022-11-01 11:05:55 -0400;
d62c626cb0 fix test error by
mikejiang <mike@ozette.ai>2022-10-23 17:40:48 -0700;
de57752b26 bump by
mikejiang <mike@ozette.ai>2022-10-21 19:06:24 -0700;
3e20cdab6b update cpp11 code by
mikejiang <mike@ozette.ai>2022-10-21 18:17:11 -0700;
ec6445d2dc update cp11 code by
mikejiang <mike@ozette.ai>2022-10-21 17:22:43 -0700;
54f124a903 merge by
mikejiang <mike@ozette.ai>2022-10-21 17:01:38 -0700;
0038a98b14 Merge branch 'master' of github.com:OzetteTech/flowWorkspace by
mikejiang <mike@ozette.ai>2022-10-21 17:00:24 -0700;
46dcefc254 update to AGPL-3.0 by
Greg Finak <greg@ozette.ai>2022-10-21 13:37:54 -0700;
beda3689ec Update README.md by
Mike Jiang <wenxin.jiang@gmail.com>2022-09-05 16:45:22 -0700;
2fb3694c91 merge by
mikejiang <mike@ozette.ai>2022-07-04 15:53:25 -0700;
c685c43cc0 bump by
mikejiang <mike@ozette.ai>2022-07-04 15:50:41 -0700;
32a3f7dc44 Merge branch 'devel' by
mikejiang <mike@ozette.ai>2022-07-04 15:50:16 -0700;
4ce822ea08 bump by
mikejiang <mike@ozette.ai>2022-07-04 15:47:25 -0700;
2871f70bc7 fix test by
mikejiang <mike@ozette.ai>2022-07-04 15:46:38 -0700;
5c6e34cf46 bump x.y.z version to odd y following creation of RELEASE_3_15 branch by
Nitesh Turaga <nitesh.turaga@gmail.com>2022-04-26 15:07:52 +0000;
8cb4b97314 (origin/RELEASE_3_15, RELEASE_3_15) bump x.y.z version to even y prior to creation of RELEASE_3_15 branch by
Nitesh Turaga <nitesh.turaga@gmail.com>2022-04-26 15:07:52 +0000;
c19eeb71f5 add generate_gatingset_archive() by
mikejiang <mike@ozette.ai>2022-04-02 11:15:05 -0700;
4a9d6718de fix typo by
mikejiang <mike@ozette.ai>2022-03-30 17:52:57 -0700;
9190b33561 Merge branch 'master' into devel by
mikejiang <mike@ozette.ai>2022-02-17 17:04:42 -0800;
7ec14c4fa0 fixed build err by
mikejiang <mike@ozette.ai>2022-02-17 17:04:19 -0800;
4fcbf0b49d Merge branch 'master' into devel by
mikejiang <mike@ozette.ai>2022-02-17 17:03:18 -0800;
6fcd3d8d40 bump x.y.z version to odd y following creation of RELEASE_3_14 branch by
Nitesh Turaga <nitesh.turaga@gmail.com>2021-10-26 15:59:12 +0000;
987d7684d2 bump x.y.z version to even y prior to creation of RELEASE_3_14 branch by
Nitesh Turaga <nitesh.turaga@gmail.com>2021-10-26 15:59:12 +0000;
d3559f69f9 bump x.y.z version to odd y following creation of RELEASE_3_14 branch by
Nitesh Turaga <nitesh.turaga@gmail.com>2021-10-26 15:59:12 +0000;
60bc06df76 (origin/RELEASE_3_14, RELEASE_3_14) bump x.y.z version to even y prior to creation of RELEASE_3_14 branch by
Nitesh Turaga <nitesh.turaga@gmail.com>2021-10-26 15:59:12 +0000;
3235b1d49e rm direct gpl deps by
mikejiang <mike@ozette.ai>2021-08-02 19:05:28 -0700;
7e432829d5 merge master by
mikejiang <mike@ozette.ai>2021-08-02 16:42:33 -0700;
c4e4f0f53f port hashmap in getPopStats.cpp from master by
mikejiang <mike@ozette.ai>2021-08-02 16:41:06 -0700;
613a034a2f bump by
mikejiang <mike@ozette.ai>2021-07-30 10:32:27 -0700;
8a16ffab08 fix bioc test error by
mikejiang <mike@ozette.ai>2021-07-30 10:27:31 -0700;
2154576cb8 update emails by
mikejiang <mike@ozette.ai>2021-07-30 10:14:31 -0700;
c85799e751 Merge branch 'master' into devel by
mikejiang <mike@ozette.ai>2021-07-30 10:33:21 -0700;
a359921537 bump by
mikejiang <mike@ozette.ai>2021-07-30 10:32:27 -0700;
93678e5e06 fix bioc test error by
mikejiang <mike@ozette.ai>2021-07-30 10:27:31 -0700;
bf113221a7 update emails by
mikejiang <mike@ozette.ai>2021-07-30 10:14:31 -0700;
31eed65843 cache hash for pop vs id since it is expensive to compute for large tree (#364) by
Mike Jiang <mike@ozette.ai>2021-07-27 23:06:52 -0700;
5959af4a8b cleanup by
mikejiang <mike@ozette.ai>2021-07-26 11:14:46 -0700;
c0088340cc fix rectangleGate test by
mikejiang <mike@ozette.ai>2021-07-23 18:14:55 -0700;
a7ee32602b ensure types are double before passing to cpp11 by
mikejiang <mike@ozette.ai>2021-07-23 18:06:28 -0700;
5ba8f0b0b6 make cytoml compile by
mikejiang <mike@ozette.ai>2021-07-19 17:15:50 -0700;
6a22cdf899 deal with empty cs by
mikejiang <mike@ozette.ai>2021-07-16 15:27:28 -0700;
3b304ec039 rm rcpp debris by
mikejiang <mike@ozette.ai>2021-07-16 14:59:24 -0700;
fbfb1a0b69 fix cluster gate by
mikejiang <mike@ozette.ai>2021-07-16 14:44:14 -0700;
915b785cd4 fix convert_transformer by
mikejiang <mike@ozette.ai>2021-07-16 12:08:39 -0700;
470cefb6df fix boolFilter_R_to_C by
mikejiang <mike@ozette.ai>2021-07-16 11:45:29 -0700;
c83be439df fix cpp_getPopStats by
mikejiang <mike@ozette.ai>2021-07-16 11:35:30 -0700;
cabeaad2b4 deal with cpp11 bug by
mikejiang <mike@ozette.ai>2021-07-16 11:12:27 -0700;
2243bd4c73 fix tests by
mikejiang <mike@ozette.ai>2021-07-15 16:54:14 -0700;
bec3044ebc fix subset.cytoset by
mikejiang <mike@ozette.ai>2021-07-15 16:28:57 -0700;
59577ef7c2 misc by
mikejiang <mike@ozette.ai>2021-07-15 16:13:40 -0700;
ca4159f9a4 getPopCounts_cpp by
mikejiang <mike@ozette.ai>2021-07-15 15:53:32 -0700;
56911d6159 cpp_getSingleCellExpression by
mikejiang <mike@ozette.ai>2021-07-15 15:11:46 -0700;
0837e1a2c2 complete gh api by
mikejiang <mike@ozette.ai>2021-07-15 14:31:25 -0700;
8541d311f0 newGate by
mikejiang <mike@ozette.ai>2021-07-15 14:27:08 -0700;
a10e3bf6d9 boolFilter_R_to_C by
mikejiang <mike@ozette.ai>2021-07-15 12:14:19 -0700;
3ae9f1f83e cpp_getGate by
mikejiang <mike@ozette.ai>2021-07-15 11:24:04 -0700;
6bd2c59454 set_transformations by
mikejiang <mike@ozette.ai>2021-07-15 10:32:54 -0700;
a63c03c1f2 fix get pop stats by
mikejiang <mike@ozette.ai>2021-07-14 18:58:06 -0700;
9319d821e3 gh APIs by
mikejiang <mike@ozette.ai>2021-07-14 18:23:16 -0700;
474816efdc fix cs keyword setter by
mikejiang <mike@ozette.ai>2021-07-14 16:26:59 -0700;
2d08953916 gs APIs by
mikejiang <mike@ozette.ai>2021-07-14 14:43:23 -0700;
4f41ee1f07 fix cs_get_cytoframe by
mikejiang <mike@ozette.ai>2021-07-14 14:11:19 -0700;
cc27bf1574 fix set_pheno_data by
mikejiang <mike@ozette.ai>2021-07-14 14:04:19 -0700;
b6c90cb41a fix fcs_to_cytoset by
mikejiang <mike@ozette.ai>2021-07-14 12:43:01 -0700;
02477f36ca port pdata apis by
mikejiang <mike@ozette.ai>2021-07-14 12:24:42 -0700;
aa28a5ce42 mv rcpp sugar indexing back to R by
mikejiang <mike@ozette.ai>2021-07-14 11:32:25 -0700;
71314f9254 port cs Rcpp APIs by
mikejiang <mike@ozette.ai>2021-07-14 11:20:42 -0700;
33257bd6c4 add rmatrix_to_arma/arma_to_rmatrix wrappers by
mikejiang <mike@ozette.ai>2021-07-14 10:33:04 -0700;
cc2382295b fix frm_compensate by
mikejiang <mike@ozette.ai>2021-07-13 17:13:51 -0700;
e35e5a0c7e explicit coerse to str for keyword setter by
mikejiang <mike@ozette.ai>2021-07-13 17:05:32 -0700;
89cb6b861b port h5_set_error_handler by
mikejiang <mike@ozette.ai>2021-07-13 16:58:16 -0700;
a428345593 fix setkeywords by
mikejiang <mike@ozette.ai>2021-07-13 15:42:30 -0700;
c874646c9f set dimnames properly for matrix by
mikejiang <mike@ozette.ai>2021-07-13 15:29:07 -0700;
5f7ec70b76 cpp11 doesn't allow implitcit type convert by
mikejiang <mike@ozette.ai>2021-07-13 14:35:43 -0700;
335b37d552 skip rownames tests by
mikejiang <mike@ozette.ai>2021-07-13 13:57:19 -0700;
75cc8074f2 fix kw_to_sexp by
mikejiang <mike@ozette.ai>2021-07-13 12:53:40 -0700;
1e950f2f5d get rid of unsigned int by
mikejiang <mike@ozette.ai>2021-07-13 12:26:06 -0700;
17ff6d2568 deal with int64 casting by
mikejiang <mike@ozette.ai>2021-07-13 12:00:23 -0700;
79efd599bc port pdata api for cytoframe by
mikejiang <mike@ozette.ai>2021-07-13 11:20:33 -0700;
11ee095ac7 port keyword apis by
mikejiang <mike@ozette.ai>2021-07-13 10:51:05 -0700;
5737912c0b port pairVectorRcppWrap by
mikejiang <mike@ozette.ai>2021-07-13 10:32:29 -0700;
da07430c2d convert src/cytoframeAPI.cpp by
mikejiang <mike@ozette.ai>2021-07-12 12:00:15 -0700;
02ba32e582 rm cytoctx by
mikejiang <mike@ozette.ai>2021-07-12 10:28:57 -0700;
9cd06e60ab inverse the data in memory instead of cp h5 for gs_get_singlecell_expression (#362) by
Mike Jiang <mike@ozette.ai>2021-07-12 08:03:53 -0700;
07ec97b52b Update build.yml by
Mike Jiang <mike@ozette.ai>2021-07-11 21:45:21 -0700;
d36cd71510 Update build.yml by
Mike Jiang <mike@ozette.ai>2021-07-11 20:23:10 -0700;
386a9ab39a Update build.yml by
Mike Jiang <mike@ozette.ai>2021-07-11 20:19:23 -0700;
6d9fffd61b rename test_gs_compatibility flag by
mikejiang <mike@ozette.ai>2021-07-09 20:57:32 -0700;
e12fd0301f add test-gs-compatibility by
mikejiang <mike@ozette.ai>2021-07-02 12:12:23 -0700;
2457e8bfba Merge branch 'master' into devel by
mikejiang <mike@ozette.ai>2021-06-08 11:55:16 -0700;
6890d9c797 add rmarkdown to Suggests by
mikejiang <mike@ozette.ai>2021-06-08 11:55:05 -0700;
8eaab9e563 merge master by
mikejiang <mike@ozette.ai>2021-05-27 10:49:16 -0700;
6738863131 bump by
mikejiang <mike@ozette.ai>2021-05-27 10:47:45 -0700;
