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  • af121c6d54 (origin/RELEASE_3_16, RELEASE_3_16) bump by mikejiang <mike@ozette.ai> 2022-12-28 18:02:10 -0800;
  • 2de676a273 fixed mac seg fault by mikejiang <mike@ozette.ai> 2022-12-28 17:04:41 -0800;
  • 3f5adabef9 (HEAD -> master, origin/master, origin/HEAD) bump by mikejiang <mike@ozette.ai> 2022-12-28 17:58:18 -0800;
  • ad6ce6dbd9 Merge branch 'develop' by mikejiang <mike@ozette.ai> 2022-12-28 17:57:48 -0800;
  • 50c99fb0bf fixed mac seg fault by mikejiang <mike@ozette.ai> 2022-12-28 17:04:41 -0800;
  • fb34e4c492 bump x.y.z version to odd y following creation of RELEASE_3_16 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2022-11-01 11:05:55 -0400;
  • 45fa973cdc bump x.y.z version to even y prior to creation of RELEASE_3_16 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2022-11-01 11:05:55 -0400;
  • d62c626cb0 fix test error by mikejiang <mike@ozette.ai> 2022-10-23 17:40:48 -0700;
  • de57752b26 bump by mikejiang <mike@ozette.ai> 2022-10-21 19:06:24 -0700;
  • 3e20cdab6b update cpp11 code by mikejiang <mike@ozette.ai> 2022-10-21 18:17:11 -0700;
  • ec6445d2dc update cp11 code by mikejiang <mike@ozette.ai> 2022-10-21 17:22:43 -0700;
  • 54f124a903 merge by mikejiang <mike@ozette.ai> 2022-10-21 17:01:38 -0700;
  • 0038a98b14 Merge branch 'master' of github.com:OzetteTech/flowWorkspace by mikejiang <mike@ozette.ai> 2022-10-21 17:00:24 -0700;
  • 46dcefc254 update to AGPL-3.0 by Greg Finak <greg@ozette.ai> 2022-10-21 13:37:54 -0700;
  • beda3689ec Update README.md by Mike Jiang <wenxin.jiang@gmail.com> 2022-09-05 16:45:22 -0700;
  • 2fb3694c91 merge by mikejiang <mike@ozette.ai> 2022-07-04 15:53:25 -0700;
  • c685c43cc0 bump by mikejiang <mike@ozette.ai> 2022-07-04 15:50:41 -0700;
  • 32a3f7dc44 Merge branch 'devel' by mikejiang <mike@ozette.ai> 2022-07-04 15:50:16 -0700;
  • 4ce822ea08 bump by mikejiang <mike@ozette.ai> 2022-07-04 15:47:25 -0700;
  • 2871f70bc7 fix test by mikejiang <mike@ozette.ai> 2022-07-04 15:46:38 -0700;
  • 5c6e34cf46 bump x.y.z version to odd y following creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 15:07:52 +0000;
  • 8cb4b97314 (origin/RELEASE_3_15, RELEASE_3_15) bump x.y.z version to even y prior to creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 15:07:52 +0000;
  • 28cc922acf remove unused arguments <a href="#376">#376</a> by mikejiang <mike@ozette.ai> 2022-04-24 14:53:12 -0700;
  • c19eeb71f5 add generate_gatingset_archive() by mikejiang <mike@ozette.ai> 2022-04-02 11:15:05 -0700;
  • 4a9d6718de fix typo by mikejiang <mike@ozette.ai> 2022-03-30 17:52:57 -0700;
  • 9190b33561 Merge branch 'master' into devel by mikejiang <mike@ozette.ai> 2022-02-17 17:04:42 -0800;
  • 7ec14c4fa0 fixed build err by mikejiang <mike@ozette.ai> 2022-02-17 17:04:19 -0800;
  • 4fcbf0b49d Merge branch 'master' into devel by mikejiang <mike@ozette.ai> 2022-02-17 17:03:18 -0800;
  • 6fcd3d8d40 bump x.y.z version to odd y following creation of RELEASE_3_14 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-10-26 15:59:12 +0000;
  • 987d7684d2 bump x.y.z version to even y prior to creation of RELEASE_3_14 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-10-26 15:59:12 +0000;
  • d3559f69f9 bump x.y.z version to odd y following creation of RELEASE_3_14 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-10-26 15:59:12 +0000;
  • 60bc06df76 (origin/RELEASE_3_14, RELEASE_3_14) bump x.y.z version to even y prior to creation of RELEASE_3_14 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-10-26 15:59:12 +0000;
  • 3235b1d49e rm direct gpl deps by mikejiang <mike@ozette.ai> 2021-08-02 19:05:28 -0700;
  • 7e432829d5 merge master by mikejiang <mike@ozette.ai> 2021-08-02 16:42:33 -0700;
  • c4e4f0f53f port hashmap in getPopStats.cpp from master by mikejiang <mike@ozette.ai> 2021-08-02 16:41:06 -0700;
  • 613a034a2f bump by mikejiang <mike@ozette.ai> 2021-07-30 10:32:27 -0700;
  • 8a16ffab08 fix bioc test error by mikejiang <mike@ozette.ai> 2021-07-30 10:27:31 -0700;
  • 2154576cb8 update emails by mikejiang <mike@ozette.ai> 2021-07-30 10:14:31 -0700;
  • c85799e751 Merge branch 'master' into devel by mikejiang <mike@ozette.ai> 2021-07-30 10:33:21 -0700;
  • a359921537 bump by mikejiang <mike@ozette.ai> 2021-07-30 10:32:27 -0700;
  • 93678e5e06 fix bioc test error by mikejiang <mike@ozette.ai> 2021-07-30 10:27:31 -0700;
  • bf113221a7 update emails by mikejiang <mike@ozette.ai> 2021-07-30 10:14:31 -0700;
  • 31eed65843 cache hash for pop vs id since it is expensive to compute for large tree (#364) by Mike Jiang <mike@ozette.ai> 2021-07-27 23:06:52 -0700;
  • 5959af4a8b cleanup by mikejiang <mike@ozette.ai> 2021-07-26 11:14:46 -0700;
  • c0088340cc fix rectangleGate test by mikejiang <mike@ozette.ai> 2021-07-23 18:14:55 -0700;
  • a7ee32602b ensure types are double before passing to cpp11 by mikejiang <mike@ozette.ai> 2021-07-23 18:06:28 -0700;
  • 5ba8f0b0b6 make cytoml compile by mikejiang <mike@ozette.ai> 2021-07-19 17:15:50 -0700;
  • 6a22cdf899 deal with empty cs by mikejiang <mike@ozette.ai> 2021-07-16 15:27:28 -0700;
  • 3b304ec039 rm rcpp debris by mikejiang <mike@ozette.ai> 2021-07-16 14:59:24 -0700;
  • fbfb1a0b69 fix cluster gate by mikejiang <mike@ozette.ai> 2021-07-16 14:44:14 -0700;
  • 915b785cd4 fix convert_transformer by mikejiang <mike@ozette.ai> 2021-07-16 12:08:39 -0700;
  • 470cefb6df fix boolFilter_R_to_C by mikejiang <mike@ozette.ai> 2021-07-16 11:45:29 -0700;
  • c83be439df fix cpp_getPopStats by mikejiang <mike@ozette.ai> 2021-07-16 11:35:30 -0700;
  • cabeaad2b4 deal with cpp11 bug by mikejiang <mike@ozette.ai> 2021-07-16 11:12:27 -0700;
  • 2243bd4c73 fix tests by mikejiang <mike@ozette.ai> 2021-07-15 16:54:14 -0700;
  • bec3044ebc fix subset.cytoset by mikejiang <mike@ozette.ai> 2021-07-15 16:28:57 -0700;
  • 59577ef7c2 misc by mikejiang <mike@ozette.ai> 2021-07-15 16:13:40 -0700;
  • ca4159f9a4 getPopCounts_cpp by mikejiang <mike@ozette.ai> 2021-07-15 15:53:32 -0700;
  • 56911d6159 cpp_getSingleCellExpression by mikejiang <mike@ozette.ai> 2021-07-15 15:11:46 -0700;
  • 0837e1a2c2 complete gh api by mikejiang <mike@ozette.ai> 2021-07-15 14:31:25 -0700;
  • 8541d311f0 newGate by mikejiang <mike@ozette.ai> 2021-07-15 14:27:08 -0700;
  • a10e3bf6d9 boolFilter_R_to_C by mikejiang <mike@ozette.ai> 2021-07-15 12:14:19 -0700;
  • 3ae9f1f83e cpp_getGate by mikejiang <mike@ozette.ai> 2021-07-15 11:24:04 -0700;
  • 6bd2c59454 set_transformations by mikejiang <mike@ozette.ai> 2021-07-15 10:32:54 -0700;
  • a63c03c1f2 fix get pop stats by mikejiang <mike@ozette.ai> 2021-07-14 18:58:06 -0700;
  • 9319d821e3 gh APIs by mikejiang <mike@ozette.ai> 2021-07-14 18:23:16 -0700;
  • 474816efdc fix cs keyword setter by mikejiang <mike@ozette.ai> 2021-07-14 16:26:59 -0700;
  • 2d08953916 gs APIs by mikejiang <mike@ozette.ai> 2021-07-14 14:43:23 -0700;
  • 4f41ee1f07 fix cs_get_cytoframe by mikejiang <mike@ozette.ai> 2021-07-14 14:11:19 -0700;
  • cc27bf1574 fix set_pheno_data by mikejiang <mike@ozette.ai> 2021-07-14 14:04:19 -0700;
  • b6c90cb41a fix fcs_to_cytoset by mikejiang <mike@ozette.ai> 2021-07-14 12:43:01 -0700;
  • 02477f36ca port pdata apis by mikejiang <mike@ozette.ai> 2021-07-14 12:24:42 -0700;
  • aa28a5ce42 mv rcpp sugar indexing back to R by mikejiang <mike@ozette.ai> 2021-07-14 11:32:25 -0700;
  • 71314f9254 port cs Rcpp APIs by mikejiang <mike@ozette.ai> 2021-07-14 11:20:42 -0700;
  • 33257bd6c4 add rmatrix_to_arma/arma_to_rmatrix wrappers by mikejiang <mike@ozette.ai> 2021-07-14 10:33:04 -0700;
  • cc2382295b fix frm_compensate by mikejiang <mike@ozette.ai> 2021-07-13 17:13:51 -0700;
  • e35e5a0c7e explicit coerse to str for keyword setter by mikejiang <mike@ozette.ai> 2021-07-13 17:05:32 -0700;
  • 89cb6b861b port h5_set_error_handler by mikejiang <mike@ozette.ai> 2021-07-13 16:58:16 -0700;
  • a428345593 fix setkeywords by mikejiang <mike@ozette.ai> 2021-07-13 15:42:30 -0700;
  • c874646c9f set dimnames properly for matrix by mikejiang <mike@ozette.ai> 2021-07-13 15:29:07 -0700;
  • 5f7ec70b76 cpp11 doesn't allow implitcit type convert by mikejiang <mike@ozette.ai> 2021-07-13 14:35:43 -0700;
  • 335b37d552 skip rownames tests by mikejiang <mike@ozette.ai> 2021-07-13 13:57:19 -0700;
  • 75cc8074f2 fix kw_to_sexp by mikejiang <mike@ozette.ai> 2021-07-13 12:53:40 -0700;
  • 1e950f2f5d get rid of unsigned int by mikejiang <mike@ozette.ai> 2021-07-13 12:26:06 -0700;
  • 17ff6d2568 deal with int64 casting by mikejiang <mike@ozette.ai> 2021-07-13 12:00:23 -0700;
  • 79efd599bc port pdata api for cytoframe by mikejiang <mike@ozette.ai> 2021-07-13 11:20:33 -0700;
  • 11ee095ac7 port keyword apis by mikejiang <mike@ozette.ai> 2021-07-13 10:51:05 -0700;
  • 5737912c0b port pairVectorRcppWrap by mikejiang <mike@ozette.ai> 2021-07-13 10:32:29 -0700;
  • da07430c2d convert src/cytoframeAPI.cpp by mikejiang <mike@ozette.ai> 2021-07-12 12:00:15 -0700;
  • 02ba32e582 rm cytoctx by mikejiang <mike@ozette.ai> 2021-07-12 10:28:57 -0700;
  • 9cd06e60ab inverse the data in memory instead of cp h5 for gs_get_singlecell_expression (#362) by Mike Jiang <mike@ozette.ai> 2021-07-12 08:03:53 -0700;
  • 07ec97b52b Update build.yml by Mike Jiang <mike@ozette.ai> 2021-07-11 21:45:21 -0700;
  • d36cd71510 Update build.yml by Mike Jiang <mike@ozette.ai> 2021-07-11 20:23:10 -0700;
  • 386a9ab39a Update build.yml by Mike Jiang <mike@ozette.ai> 2021-07-11 20:19:23 -0700;
  • 6d9fffd61b rename test_gs_compatibility flag by mikejiang <mike@ozette.ai> 2021-07-09 20:57:32 -0700;
  • e12fd0301f add test-gs-compatibility by mikejiang <mike@ozette.ai> 2021-07-02 12:12:23 -0700;
  • 2457e8bfba Merge branch 'master' into devel by mikejiang <mike@ozette.ai> 2021-06-08 11:55:16 -0700;
  • 6890d9c797 add rmarkdown to Suggests by mikejiang <mike@ozette.ai> 2021-06-08 11:55:05 -0700;
  • 8eaab9e563 merge master by mikejiang <mike@ozette.ai> 2021-05-27 10:49:16 -0700;
  • 6738863131 bump by mikejiang <mike@ozette.ai> 2021-05-27 10:47:45 -0700;