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  • ba52c15 (HEAD -> master, origin/master, origin/HEAD) bump x.y.z version to odd y following creation of RELEASE_3_16 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2022-11-01 11:24:21 -0400;
  • 2859a7a (origin/RELEASE_3_16, RELEASE_3_16) bump x.y.z version to even y prior to creation of RELEASE_3_16 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2022-11-01 11:24:21 -0400;
  • e0bda0b bump x.y.z version to odd y following creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 16:14:11 +0000;
  • eb554a0 (origin/RELEASE_3_15, RELEASE_3_15) bump x.y.z version to even y prior to creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 16:14:11 +0000;
  • 4fe49cb bump x.y.z version to odd y following creation of RELEASE_3_14 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-10-26 17:08:07 +0000;
  • c13bb2e (origin/RELEASE_3_14, RELEASE_3_14) bump x.y.z version to even y prior to creation of RELEASE_3_14 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-10-26 17:08:07 +0000;
  • 7f662b2 bump x.y.z version to odd y following creation of RELEASE_3_13 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-05-19 17:01:12 +0000;
  • 5bbca3c (origin/RELEASE_3_13, RELEASE_3_13) bump x.y.z version to even y prior to creation of RELEASE_3_13 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-05-19 17:01:12 +0000;
  • bd480a9 version bump by catherine <catherinem.ross@mail.utoronto.ca> 2021-04-24 18:15:24 -0400;
  • 20a451d news for v0.99.7 by catherine <catherinem.ross@mail.utoronto.ca> 2021-04-24 18:15:10 -0400;
  • 98bb765 minor changes to example comments by catherine <catherinem.ross@mail.utoronto.ca> 2021-04-24 18:14:36 -0400;
  • 7c103bf added info to explain example data in README and vignettes by catherine <catherinem.ross@mail.utoronto.ca> 2021-04-24 18:10:29 -0400;
  • 13a7a72 minor changes by catherine <catherinem.ross@mail.utoronto.ca> 2021-04-24 18:09:10 -0400;
  • e0233fc parameterized several hard-coded variables by catherine <catherinem.ross@mail.utoronto.ca> 2021-04-24 18:08:38 -0400;
  • 7981cc2 minor changes to example comments by catherine <catherinem.ross@mail.utoronto.ca> 2021-04-24 18:05:38 -0400;
  • 7482ba3 merged main by Catherine Ross <catherinem.ross@mail.utoronto.ca> 2021-04-06 16:30:37 -0400;
  • f2cb1eb minor README changes by Catherine Ross <catherinem.ross@mail.utoronto.ca> 2021-04-06 16:28:59 -0400;
  • 60ab02c merged bioc by Catherine Ross <catherinem.ross@mail.utoronto.ca> 2021-03-24 14:53:07 -0400;
  • 975193d version bump by Catherine Ross <catherinem.ross@mail.utoronto.ca> 2021-03-24 14:52:19 -0400;
  • 878ea49 version bump by Catherine Ross <catherinem.ross@mail.utoronto.ca> 2021-03-24 14:51:56 -0400;
  • e1837df updating data script paths by Catherine Ross <catherinem.ross@mail.utoronto.ca> 2021-03-24 14:50:38 -0400;
  • 1b10f99 merge bioc by Catherine Ross <catherinem.ross@mail.utoronto.ca> 2021-03-24 14:22:23 -0400;
  • cef11fc version bump by Catherine Ross <catherinem.ross@mail.utoronto.ca> 2021-03-24 14:21:40 -0400;
  • 89b3f4e trimmed external data size by Catherine Ross <catherinem.ross@mail.utoronto.ca> 2021-03-24 14:20:18 -0400;
  • e18d1b6 merged bioc by Catherine Ross <catherinem.ross@mail.utoronto.ca> 2021-03-24 14:15:58 -0400;
  • 1065274 trimming raw data size by Catherine Ross <catherinem.ross@mail.utoronto.ca> 2021-03-24 14:13:43 -0400;
  • d7b642d merged main by Catherine Ross <catherinem.ross@mail.utoronto.ca> 2021-03-24 13:43:23 -0400;
  • 1595ba8 merged bioc by Catherine Ross <catherinem.ross@mail.utoronto.ca> 2021-03-24 13:36:57 -0400;
  • c7ed39a updating vignettes by Catherine Ross <catherinem.ross@mail.utoronto.ca> 2021-03-24 13:36:04 -0400;
  • 99a8dc0 using Rd format for NEWS by Catherine Ross <catherinem.ross@mail.utoronto.ca> 2021-03-24 13:13:14 -0400;
  • 00d5612 NEWS syntax changes by Catherine Ross <catherinem.ross@mail.utoronto.ca> 2021-03-24 12:56:14 -0400;
  • e199fe6 NEWS for version 0.99.4 by Catherine Ross <catherinem.ross@mail.utoronto.ca> 2021-03-24 12:45:38 -0400;
  • f66c9ac R version 4.0 for local testing by Catherine Ross <catherinem.ross@mail.utoronto.ca> 2021-03-24 02:58:50 -0400;
  • c559ede Merge branch 'bioc' of https://github.com/rosscm/fedup into bioc by Catherine Ross <catherinem.ross@mail.utoronto.ca> 2021-03-24 02:53:35 -0400;
  • e1256d7 Merge branch 'main' of https://github.com/rosscm/fedup into main by Catherine Ross <catherinem.ross@mail.utoronto.ca> 2021-03-24 02:51:52 -0400;
  • d02a6a4 preserve DESCRIPTION (version diff) during merges by Catherine Ross <catherinem.ross@mail.utoronto.ca> 2021-03-24 02:45:19 -0400;
  • 149e221 updating README by Catherine Ross <catherinem.ross@mail.utoronto.ca> 2021-03-24 02:31:21 -0400;
  • bb65b4b Revert branch 'main' into bioc by Catherine Ross <catherinem.ross@mail.utoronto.ca> 2021-03-24 02:28:13 -0400;
  • 6b922c8 updating R version dependency to 4.1 by Catherine Ross <catherinem.ross@mail.utoronto.ca> 2021-03-24 02:17:36 -0400;
  • 5f23025 Merge pull request <a href="#5">#5</a> from rosscm/bioc by Catherine Ross <catherinem.ross@mail.utoronto.ca> 2021-03-24 02:11:35 -0400;
  • 325bd78 Merge branch 'main' into bioc by Catherine Ross <catherinem.ross@mail.utoronto.ca> 2021-03-24 02:11:10 -0400;
  • a95cd74 updating README by Catherine Ross <catherinem.ross@mail.utoronto.ca> 2021-03-24 02:08:46 -0400;
  • d62e3cd re-arranging EM clusters by Catherine Ross <catherinem.ross@mail.utoronto.ca> 2021-03-24 02:08:38 -0400;
  • 22761fe Delete fedupEM_geneDouble.png by Catherine Ross <catherinem.ross@mail.utoronto.ca> 2021-03-24 02:02:56 -0400;
  • d8911dd updating README by Catherine Ross <catherinem.ross@mail.utoronto.ca> 2021-03-24 02:00:47 -0400;
  • 536127c minor wording changes by Catherine Ross <catherinem.ross@mail.utoronto.ca> 2021-03-24 02:00:39 -0400;
  • 7429e5a re-arranging EM clusters by Catherine Ross <catherinem.ross@mail.utoronto.ca> 2021-03-24 02:00:28 -0400;
  • 2bad5e5 increasing test coverage by Catherine Ross <catherinem.ross@mail.utoronto.ca> 2021-03-24 01:59:55 -0400;
  • 74072e5 updating README by Catherine Ross <catherinem.ross@mail.utoronto.ca> 2021-03-23 21:24:04 -0400;
  • 094be89 updating README by Catherine Ross <catherinem.ross@mail.utoronto.ca> 2021-03-23 21:20:43 -0400;
  • c7d784c Merge pull request <a href="#4">#4</a> from rosscm/bioc by Catherine Ross <catherinem.ross@mail.utoronto.ca> 2021-03-23 21:15:08 -0400;
  • 04efa8d version bump by Catherine Ross <catherinem.ross@mail.utoronto.ca> 2021-03-23 21:13:46 -0400;
  • 20ef6d6 updating README by Catherine Ross <catherinem.ross@mail.utoronto.ca> 2021-03-23 20:43:39 -0400;
  • ebed024 compressing vignette size by Catherine Ross <catherinem.ross@mail.utoronto.ca> 2021-03-23 20:43:29 -0400;
  • 98ddb9e removing unnecessary files by Catherine Ross <catherinem.ross@mail.utoronto.ca> 2021-03-23 20:42:59 -0400;
  • 09feb7e updated README by Catherine Ross <catherinem.ross@mail.utoronto.ca> 2021-03-23 19:38:52 -0400;
  • f15ca74 full vignettes for various fedup implementations by Catherine Ross <catherinem.ross@mail.utoronto.ca> 2021-03-23 19:38:44 -0400;
  • 6692b29 unit tests by Catherine Ross <catherinem.ross@mail.utoronto.ca> 2021-03-23 19:38:31 -0400;
  • 56ebd8d updated docs by Catherine Ross <catherinem.ross@mail.utoronto.ca> 2021-03-23 19:37:33 -0400;
  • 0181498 minor syntax changes by Catherine Ross <catherinem.ross@mail.utoronto.ca> 2021-03-23 19:37:20 -0400;
  • cde6dcb script to prepare input gene list by Catherine Ross <catherinem.ross@mail.utoronto.ca> 2021-03-23 19:37:10 -0400;
  • ffa7013 support for analysis on multiple test sets by Catherine Ross <catherinem.ross@mail.utoronto.ca> 2021-03-23 19:36:21 -0400;
  • c886904 updated package data by Catherine Ross <catherinem.ross@mail.utoronto.ca> 2021-03-23 19:35:55 -0400;
  • 2e120b8 updated suggests field by Catherine Ross <catherinem.ross@mail.utoronto.ca> 2021-03-23 19:35:45 -0400;
  • f8852c2 updated README figures by Catherine Ross <catherinem.ross@mail.utoronto.ca> 2021-03-23 19:35:31 -0400;
  • 00c8cf7 updated package data by Catherine Ross <catherinem.ross@mail.utoronto.ca> 2021-03-23 19:34:45 -0400;
  • ab947f3 Merge pull request <a href="#2">#2</a> from rosscm/bioc by Catherine Ross <catherinem.ross@mail.utoronto.ca> 2021-03-08 19:40:08 -0500;
  • bddb9bf Merge branch 'bioc' of https://github.com/rosscm/fedup into bioc by Catherine Ross <catherinem.ross@mail.utoronto.ca> 2021-03-08 19:36:43 -0500;
  • 2342843 ignore Rprofile by Catherine Ross <catherinem.ross@mail.utoronto.ca> 2021-03-08 19:33:39 -0500;
  • 692d8e5 setting up tryCatch to return NULL if Cytoscape is not running by Catherine Ross <catherinem.ross@mail.utoronto.ca> 2021-03-05 18:11:20 -0500;
  • 37d3b80 Merge pull request <a href="#1">#1</a> from rosscm/bioc by Catherine Ross <catherinem.ross@mail.utoronto.ca> 2021-03-05 18:17:15 -0500;
  • c40e606 show package install via bioconductor by Catherine Ross <catherinem.ross@mail.utoronto.ca> 2021-03-05 18:11:20 -0500;
  • 00045fc avoid 0/0 fold enrichment calculation by Catherine Ross <catherinem.ross@mail.utoronto.ca> 2021-03-05 18:05:22 -0500;
  • aff1920 updating line formatting by Catherine Ross <catherinem.ross@mail.utoronto.ca> 2021-03-05 18:04:39 -0500;
  • 4e963e5 updating tests to reflect updated pathway objects by Catherine Ross <catherinem.ross@mail.utoronto.ca> 2021-03-05 18:04:08 -0500;
  • 5816504 updating data scripts by Catherine Ross <catherinem.ross@mail.utoronto.ca> 2021-03-05 18:01:50 -0500;
  • 3b883b4 formatting line spaces by Catherine Ross <catherinem.ross@mail.utoronto.ca> 2021-03-05 18:01:00 -0500;
  • e0ad495 added biomaRt to suggets field; LazyData: false; BugReports field added; removed Cytoscape system requirement by Catherine Ross <catherinem.ross@mail.utoronto.ca> 2021-03-05 17:59:32 -0500;
  • 196afaf show full pathwaysXLSX and pathwaysTXT data generation flow by Catherine Ross <catherinem.ross@mail.utoronto.ca> 2021-03-05 17:58:46 -0500;
  • fc29b3e removing unnecessary figures by Catherine Ross <catherinem.ross@mail.utoronto.ca> 2021-03-05 17:57:47 -0500;
  • 3f09d58 reformatting NEWS by Catherine Ross <catherinem.ross@mail.utoronto.ca> 2021-03-05 17:57:18 -0500;
  • efeb31d moving figures by Catherine Ross <catherinem.ross@mail.utoronto.ca> 2021-03-05 17:57:04 -0500;
  • bb0e939 moving scripts by Catherine Ross <catherinem.ross@mail.utoronto.ca> 2021-03-05 17:56:49 -0500;
  • 699e4b6 setting r 4.0 version dependency for local package loading and testing by Catherine Ross <catherinem.ross@mail.utoronto.ca> 2021-03-03 01:05:30 -0500;
  • 60380d6 updating R version dependency to 4.1 by Catherine Ross <catherinem.ross@mail.utoronto.ca> 2021-02-24 13:26:27 -0500;
  • 05020d8 untracking system files by Catherine Ross <catherinem.ross@mail.utoronto.ca> 2021-02-24 11:40:17 -0500;
  • 8dca7f1 version bump by Catherine Ross <catherinem.ross@mail.utoronto.ca> 2021-02-23 16:24:56 -0500;
  • bb488a5 adding logo by Catherine Ross <catherinem.ross@mail.utoronto.ca> 2021-02-21 03:18:09 -0500;
  • 5260a18 adding logo by Catherine Ross <catherinem.ross@mail.utoronto.ca> 2021-02-21 03:17:39 -0500;
  • 7db7041 adding logo by Catherine Ross <catherinem.ross@mail.utoronto.ca> 2021-02-21 03:14:34 -0500;
  • f617d9f adding logo by Catherine Ross <catherinem.ross@mail.utoronto.ca> 2021-02-21 03:11:09 -0500;
  • fa91115 renaming project by Catherine Ross <catherinem.ross@mail.utoronto.ca> 2021-02-21 02:35:10 -0500;
  • 1b21e84 renaming package by Catherine Ross <catherinem.ross@mail.utoronto.ca> 2021-02-21 02:23:58 -0500;
  • 8faf3ec renaming project by Catherine Ross <catherinem.ross@mail.utoronto.ca> 2021-02-21 02:21:13 -0500;
  • a991b0a renaming project by Catherine Ross <catherinem.ross@mail.utoronto.ca> 2021-02-21 01:45:47 -0500;
  • 623e8e9 renaming project by Catherine Ross <catherinem.ross@mail.utoronto.ca> 2021-02-21 00:36:05 -0500;
  • 5270312 renaming project by Catherine Ross <catherinem.ross@mail.utoronto.ca> 2021-02-21 00:36:05 -0500;
  • 462a0c0 minor bug fix by Catherine Ross <catherinem.ross@mail.utoronto.ca> 2021-02-18 16:54:48 -0500;
  • b62b3f3 reverting back to R 4.0 version dependency to build successfully on OS releases by Catherine Ross <catherinem.ross@mail.utoronto.ca> 2021-02-18 15:45:33 -0500;
  • 8088db7 support for pathCol (formerly pathwayCol) and geneCol to accept column numbers or column names as input by Catherine Ross <catherinem.ross@mail.utoronto.ca> 2021-02-18 15:45:03 -0500;