1. fcoex
  2. Graph
Graph of fcoex
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  • 1205a5f (HEAD -> devel, origin/master, origin/devel, origin/HEAD) bump x.y.z version to odd y following creation of RELEASE_3_17 branch by J Wokaty <jwokaty@users.noreply.github.com> 2023-04-25 11:14:01 -0400;
  • a27a8dc (origin/RELEASE_3_17, RELEASE_3_17) bump x.y.z version to even y prior to creation of RELEASE_3_17 branch by J Wokaty <jwokaty@users.noreply.github.com> 2023-04-25 11:14:01 -0400;
  • 78bae2d bump x.y.z version to odd y following creation of RELEASE_3_16 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2022-11-01 11:20:57 -0400;
  • 4de9d61 (origin/RELEASE_3_16, RELEASE_3_16) bump x.y.z version to even y prior to creation of RELEASE_3_16 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2022-11-01 11:20:57 -0400;
  • 03f66a9 bump x.y.z version to odd y following creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 16:01:03 +0000;
  • 9b34d7f (origin/RELEASE_3_15, RELEASE_3_15) bump x.y.z version to even y prior to creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 16:01:03 +0000;
  • 0a7fb44 bump x.y.z version to odd y following creation of RELEASE_3_14 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-10-26 16:55:56 +0000;
  • 6ba7fe5 (origin/RELEASE_3_14, RELEASE_3_14) bump x.y.z version to even y prior to creation of RELEASE_3_14 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-10-26 16:55:56 +0000;
  • 7edb01c Bump version by lubianat <tiago.lubiana.alves@usp.br> 2021-09-14 10:04:42 -0300;
  • 2f4bd49 Update vignettes by lubianat <tiago.lubiana.alves@usp.br> 2021-09-13 17:34:43 -0300;
  • 4fc6490 Clean the output of the save_plots function by lubianat <tiago.lubiana.alves@usp.br> 2021-09-13 15:29:34 -0300;
  • 7dc1c98 refactor: Improve appearance of output of find_cbf_modules by lubianat <tiago.lubiana.alves@usp.br> 2021-09-13 15:21:20 -0300;
  • 5557791 refactor: Improve appearance of output of find_cbf_modules by lubianat <tiago.lubiana.alves@usp.br> 2021-09-13 15:17:15 -0300;
  • d0087e3 Work on vignette by lubianat <tiago.lubiana.alves@usp.br> 2021-09-09 11:45:42 -0300;
  • d3e5a03 Start organizing better the vignettes by lubianat <tiago.lubiana.alves@usp.br> 2021-09-08 19:30:37 -0300;
  • 7e4eaa0 fix: Add rmarkdown as a dependency by lubianat <tiago.lubiana.alves@usp.br> 2021-07-28 09:44:26 -0300;
  • 784d938 bump x.y.z version to odd y following creation of RELEASE_3_13 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-05-19 16:47:53 +0000;
  • f4e35ed (origin/RELEASE_3_13, RELEASE_3_13) bump x.y.z version to even y prior to creation of RELEASE_3_13 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-05-19 16:47:53 +0000;
  • c3cb2bd chore: Version bump 1.5.4 --> 1.5.5 by lubianat <tiago.lubiana.alves@usp.br> 2021-05-12 12:01:59 -0300;
  • d6abc60 docs: Fix documentation based on checks by lubianat <tiago.lubiana.alves@usp.br> 2021-05-12 12:01:12 -0300;
  • 02d0742 code: Adress warnings from R CMD check by lubianat <tiago.lubiana.alves@usp.br> 2021-05-12 11:01:32 -0300;
  • d13f122 code: Improve memory usage and enforce binarization by lubianat <tiago.lubiana.alves@usp.br> 2021-05-12 10:42:45 -0300;
  • 0b263b7 docs: Version bump by lubianat <tiago.lubiana.alves@usp.br> 2021-05-05 09:21:13 -0300;
  • 1f9d0ae docs: Set CEMiTool boilerplate by lubianat <tiago.lubiana.alves@usp.br> 2021-05-05 09:12:53 -0300;
  • 87cf67c style: Apply tidyverse style guide for internal structure by lubianat <tiago.lubiana.alves@usp.br> 2021-05-05 09:11:25 -0300;
  • 9030c09 code: Remove buggy example and bump version by lubianat <tiago.lubiana.alves@usp.br> 2021-02-19 18:02:36 -0300;
  • aca8763 docs: Bump version by lubianat <tiago.lubiana.alves@usp.br> 2021-02-19 09:50:26 -0300;
  • 0023e96 docs: Update roxygen documentation by lubianat <tiago.lubiana.alves@usp.br> 2021-02-19 09:49:48 -0300;
  • d39bd43 test: Set parallel to false for Windows compatibility by lubianat <tiago.lubiana.alves@usp.br> 2021-02-19 09:46:47 -0300;
  • 1c85473 docs: Bump version by lubianat <tiago.lubiana.alves@usp.br> 2021-02-10 17:49:38 -0300;
  • 39e3ee9 code: Fix bugs in devtools:check by lubianat <tiago.lubiana.alves@usp.br> 2021-02-10 17:37:52 -0300;
  • 79d36fd code: Change broken variable in run_fcbf_for_module_headers by lubianat <tiago.lubiana.alves@usp.br> 2021-02-10 17:12:38 -0300;
  • 62fd400 code: Change broken variable in find_cbf_modules by lubianat <tiago.lubiana.alves@usp.br> 2021-02-10 16:51:41 -0300;
  • c4dc9bd code: Add schex to vignette by lubianat <tiago.lubiana.alves@usp.br> 2021-02-05 17:55:55 -0300;
  • e118acb Update vignette by lubianat <tiago.lubiana.alves@usp.br> 2021-02-05 16:25:31 -0300;
  • c66fe9a code: Remove annoying print statement by lubianat <tiago.lubiana.alves@usp.br> 2021-02-03 14:03:43 -0300;
  • 2e99fa7 Merge remote-tracking branch 'upstream/master' by lubianat <tiago.lubiana.alves@usp.br> 2021-02-01 15:42:32 -0300;
  • 0e2acaa Update gitignore by lubianat <tiago.lubiana.alves@usp.br> 2021-01-21 13:13:13 -0300;
  • 401b441 Remove cached files by lubianat <tiago.lubiana.alves@usp.br> 2021-01-21 09:45:28 -0300;
  • af16e4c bump x.y.z version to odd y following creation of RELEASE_3_12 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-10-27 11:51:24 -0400;
  • 4e80420 (origin/RELEASE_3_12, RELEASE_3_12) bump x.y.z version to even y prior to creation of RELEASE_3_12 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-10-27 11:51:24 -0400;
  • e84b0dd Reorganize files for functions by lubianat <tiago.lubiana.alves@usp.br> 2020-08-17 12:02:47 -0300;
  • 953957f Refactor find_cbf_modules by lubianat <tiago.lubiana.alves@usp.br> 2020-08-16 23:24:10 -0300;
  • 50c04ef Refactor get_su_ranking_in_relation_to_class by lubianat <tiago.lubiana.alves@usp.br> 2020-08-16 23:11:00 -0300;
  • e12cc2d Extract method refactor by lubianat <tiago.lubiana.alves@usp.br> 2020-08-16 22:55:25 -0300;
  • 94a64e3 extracting function out of find_cbf_modules by lubianat <tiago.lubiana.alves@usp.br> 2020-05-04 09:03:51 -0300;
  • 116d2fa extracting function out of find_cbf_modules by lubianat <tiago.lubiana.alves@usp.br> 2020-05-04 08:49:58 -0300;
  • c71d690 refining tests and starting refactoring of find_modules function by lubianat <tiago.lubiana.alves@usp.br> 2020-05-03 18:12:22 -0300;
  • 043553e Refactoring and debugging find_cbf_modules function by lubianat <tiago.lubiana.alves@usp.br> 2020-05-02 14:32:17 -0300;
  • 7307f56 starting to set proper tests and debugging find_cbf_modules function by lubianat <tiago.lubiana.alves@usp.br> 2020-05-01 20:35:58 -0300;
  • 64aae51 adapting parameters to match FCBF's new names by lubianat <tiago.lubiana.alves@usp.br> 2020-05-01 19:58:48 -0300;
  • 93681ed bump x.y.z version to odd y following creation of RELEASE_3_11 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-04-27 19:32:20 +0000;
  • ddcb71e (origin/RELEASE_3_11, RELEASE_3_11) bump x.y.z version to even y prior to creation of RELEASE_3_11 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-04-27 19:32:20 +0000;
  • 6fa035d version bump by lubianat <tiago.lubiana.alves@usp.br> 2020-04-08 16:02:44 -0300;
  • 63efd18 fixing bugs to conform with R 4.0.0 by lubianat <tiago.lubiana.alves@usp.br> 2020-04-08 15:58:35 -0300;
  • fa29ec9 Update README.md by Computational Systems Biology Laboratory <8866035+csbl-usp@users.noreply.github.com> 2019-12-09 14:50:39 -0300;
  • 0ad24b7 Update README.md by Tiago Lubiana <tiago.lubiana.alves@usp.br> 2019-11-11 18:33:02 -0300;
  • 4c2435d updating readme by Tiago Lubiana <tiago.lubiana.alves@usp.br> 2019-11-05 17:04:17 -0200;
  • 8255f1b Merge branch 'master' of github.com:csbl-usp/fcoex by Tiago Lubiana <tiago.lubiana.alves@usp.br> 2019-11-04 15:41:54 -0200;
  • cdf5319 Merge branch 'master' of github.com:csbl-usp/fcoex by CSBL <tiago.lubiana.alves@usp.br> 2019-11-04 14:41:22 -0300;
  • aa0b093 Returning also full adjacency table to fcoex object by CSBL <tiago.lubiana.alves@usp.br> 2019-11-04 14:41:06 -0300;
  • 86a2a0f Updatingn vignette by Tiago Lubiana <tiago.lubiana.alves@usp.br> 2019-11-04 15:37:34 -0200;
  • 27fbe7a updating the readme by CSBL <tiago.lubiana.alves@usp.br> 2019-10-31 10:51:36 -0300;
  • 3bdaec1 mend by CSBL <tiago.lubiana.alves@usp.br> 2019-10-31 10:26:18 -0300;
  • 652a824 mend by CSBL <tiago.lubiana.alves@usp.br> 2019-10-31 10:25:42 -0300;
  • 417cf18 mend by CSBL <tiago.lubiana.alves@usp.br> 2019-10-31 10:16:41 -0300;
  • 0346725 Adding documentation clarifying that functions were modified from CEMiTool by CSBL <tiago.lubiana.alves@usp.br> 2019-10-31 10:16:09 -0300;
  • 1be58c7 Updating gitignore by CSBL <tiago.lubiana.alves@usp.br> 2019-10-30 11:11:43 -0300;
  • 6d957d7 bump x.y.z version to odd y after creation of RELEASE_3_10 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-10-29 13:43:47 -0400;
  • 8798edb (origin/RELEASE_3_10, RELEASE_3_10) bump x.y.z version to even y prior to creation of RELEASE_3_10 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-10-29 13:12:16 -0400;
  • 41e25f5 setting eval=FALSE to avoid creating directories in bioc building system by Tiago Lubiana <tiago.lubiana.alves@usp.br> 2019-10-22 14:40:46 -0300;
  • 933e051 Changing default of save_plots to tempdir() and bumping version by Tiago Lubiana <tiago.lubiana.alves@usp.br> 2019-10-21 17:48:10 -0300;
  • 73d90c8 Fixing bugs and adding Seurat to vignette by Tiago Lubiana <tiago.lubiana.alves@usp.br> 2019-10-17 13:44:43 -0300;
  • 6896a2c Making changes raised by dvantwisk by Tiago Lubiana <tiago.lubiana.alves@usp.br> 2019-10-17 11:55:00 -0300;
  • 8a9294c Updating plot_ora by Tiago Lubiana <tiago.lubiana.alves@usp.br> 2019-10-03 14:18:45 -0300;
  • 4fcec97 Adding missing dataset by Tiago Lubiana <tiago.lubiana.alves@usp.br> 2019-09-23 14:03:20 -0300;
  • de0db89 Removing extra files and bumping version by Tiago Lubiana <tiago.lubiana.alves@usp.br> 2019-09-19 16:55:07 -0300;
  • 576b91d Version bump after fixing bug in dependence by Tiago Lubiana <tiago.lubiana.alves@usp.br> 2019-09-19 15:32:16 -0300;
  • 863f6bf Version bump by Tiago Lubiana <tiago.lubiana.alves@usp.br> 2019-09-18 16:21:29 -0300;
  • 79bf372 Selecting correct dataset by Tiago Lubiana <tiago.lubiana.alves@usp.br> 2019-09-18 12:37:45 -0300;
  • d51ab2a Resaving mini_pbmc3k and solving R CMD check issues by Tiago Lubiana <tiago.lubiana.alves@usp.br> 2019-09-18 12:36:22 -0300;
  • 0344a3d mend by Tiago Lubiana <tiago.lubiana.alves@usp.br> 2019-09-17 17:18:16 -0300;
  • c1f4e95 Changing the mini_pbmck3k object in the hope of fixing hdf5 pointer issue by Tiago Lubiana <tiago.lubiana.alves@usp.br> 2019-09-17 17:18:00 -0300;
  • ee3bff7 Vignette update and version bump by Tiago Lubiana <tiago.lubiana.alves@usp.br> 2019-09-14 16:48:58 -0300;
  • 7bb0a46 Resaving mini_pbmc3k file and bumping version by Tiago Lubiana <tiago.lubiana.alves@usp.br> 2019-09-13 18:59:41 -0300;
  • 49eea83 debug by Tiago Lubiana <tiago.lubiana.alves@usp.br> 2019-09-13 16:45:24 -0300;
  • 91bf0a3 Updating recluster function to tell which clusters are header negative or positive by Tiago Lubiana <tiago.lubiana.alves@usp.br> 2019-09-13 15:30:50 -0300;
  • d6aba76 Basically updating the vignette by Tiago Lubiana <tiago.lubiana.alves@usp.br> 2019-09-13 15:03:27 -0300;
  • ed56cd1 version bump by Tiago Lubiana <tiago.lubiana.alves@usp.br> 2019-09-13 14:34:17 -0300;
  • eef2330 Changing documentation of dataset to prevent warnings by Tiago Lubiana <tiago.lubiana.alves@usp.br> 2019-09-13 14:30:44 -0300;
  • 7bc00a6 Rhist by CSBL <tiago.lubiana.alves@usp.br> 2019-09-12 16:56:25 -0300;
  • 7740cf2 gitignore by CSBL <tiago.lubiana.alves@usp.br> 2019-09-12 16:55:48 -0300;
  • 0beb61c Updating description by Tiago Lubiana <tiago.lubiana.alves@usp.br> 2019-09-09 13:01:32 -0300;
  • 20ae31f Adding documentation by Tiago Lubiana <tiago.lubiana.alves@usp.br> 2019-09-09 10:58:02 -0300;
  • 7c54929 Fixing vignette by Tiago Lubiana <tiago.lubiana.alves@usp.br> 2019-08-28 13:21:33 -0300;
  • 253c5a3 Cleaning vignette by Tiago Lubiana <tiago.lubiana.alves@usp.br> 2019-08-26 16:16:38 -0300;
  • 5139aae Adding accessors and formatting code by Tiago Lubiana <tiago.lubiana.alves@usp.br> 2019-08-26 15:17:31 -0300;
  • 606a549 Updating docs by Tiago Lubiana <tiago.lubiana.alves@usp.br> 2019-08-26 14:20:36 -0300;
  • 085a727 Cleaning up vignette by Tiago Lubiana <tiago.lubiana.alves@usp.br> 2019-08-26 14:19:38 -0300;
  • ff187fe Cleaning package for Bioc by Tiago Lubiana <tiago.lubiana.alves@usp.br> 2019-08-26 13:55:53 -0300;