# fcoex A package for FCBF-based coexpression analysis of single cell data. The fcoex package implements an easy-to use interface to co-expression analysis based on the FCBF (Fast Correlation-Based Filter) algorithm. The package structure is adapted from the CEMiTool package, relying on visualizations and code designed and written by CEMiTool's authors. ## Installing the package ### Bioconductor fcoex is now on Bioconductor (https://bioconductor.org/packages/fcoex/) To install it, just run:` ``` if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install(version='devel') BiocManager::install("fcoex") ``` ### Development version It is also possible to install the current, development version from source code using devtools. Modifications from version on Bioconductor: * fc@adjacency returned previously a trimmed version of the adjacency matrix. Now it returns a full, weighted adjacency matrix. * fc@adjacency_trimmed now returns the trimmed adjacency matrix. ``` install.packages(devtools) devtools::install_github(repo = "csbl-usp/fcoex", ref="devel") ```