A package for FCBF-based coexpression analysis of single cell data.
The fcoex package implements an easy-to use interface to co-expression analysis based on the FCBF (Fast Correlation-Based Filter) algorithm. The package structure is adapted from the CEMiTool package, relying on visualizations and code designed and written by CEMiTool's authors.
## Installing the package
fcoex is now on Bioconductor (https://bioconductor.org/packages/fcoex/)
To install it, just run:`
if (!requireNamespace("BiocManager", quietly = TRUE))
### Development version
It is also possible to install the current, development version from source code using devtools.
Modifications from version on Bioconductor:
* fc@adjacency returned previously a trimmed version of the adjacency matrix. Now it returns a full, weighted adjacency matrix.
* fc@adjacency_trimmed now returns the trimmed adjacency matrix.
devtools::install_github(repo = "csbl-usp/fcoex", ref="devel")