Package:fcScan
Type: Package
Title: fcScan for detecting clusters of coordinates with user defined options
Version: 1.17.0
biocViews: GenomeAnnotation, Clustering
Authors@R: c(
    person("Abdullah", "El-Kurdi", email="ak161@aub.edu.lb", role = c("aut")),
    person("Ghiwa", "khalil", email="gk39@aub.edu.lb", role=c("aut")),
    person("Georges", "Khazen" ,email="gkhazen@lau.edu.lb", role=c("ctb")),
    person("Pierre", "Khoueiry", email="pk17@aub.edu.lb", role=c("aut","cre")))
Maintainer: Pierre Khoueiry <pk17@aub.edu.lb> Abdullah El-Kurdi <ak161@aub.edu.lb>
Description: This package is used to detect combination of genomic coordinates falling within a user defined window size along with user defined overlap between identified neighboring clusters. It can be used for genomic data where the clusters are built on a specific chromosome or specific strand. Clustering can be performed with a "greedy" option allowing thus the presence of additional sites within the allowed window size.
License: Artistic-2.0
Encoding: UTF-8
Imports: stats, plyr, VariantAnnotation, SummarizedExperiment, rtracklayer, GenomicRanges, methods, IRanges, foreach, doParallel, parallel
VignetteBuilder: knitr
Suggests: RUnit, BiocGenerics, BiocStyle, knitr, rmarkdown
RoxygenNote: 6.1.0