a20fa58 (HEAD -> devel, origin/master, origin/devel, origin/HEAD) bump x.y.z version to odd y following creation of RELEASE_3_18 branch by
J Wokaty <jennifer.wokaty@sph.cuny.edu>2023-10-24 11:41:36 -0400;
5a8ce24 (origin/RELEASE_3_18, RELEASE_3_18) bump x.y.z version to even y prior to creation of RELEASE_3_18 branch by
J Wokaty <jennifer.wokaty@sph.cuny.edu>2023-10-24 11:41:36 -0400;
b9e7e8d Updated Vignettes by
Stevie Ped <stephen.pederson.au@gmail.com>2023-10-09 17:45:07 +1030;
02ef0ce Version bump after minor tweaks by
Stevie Ped <stephen.pederson.au@gmail.com>2023-10-04 01:44:18 +1030;
fed504a Tweaked documentation by
Stevie Ped <stephen.pederson.au@gmail.com>2023-10-03 21:53:59 +1030;
7e36879 Adde globalVariables. Improved filtering for plotProfileHeatmap by
Stevie Ped <stephen.pederson.au@gmail.com>2023-10-01 03:06:18 +1030;
8ed7100 Added respectLevels to plotProfileHeatmap by
Stevie Ped <stephen.pederson.au@gmail.com>2023-09-29 23:55:04 +0930;
38be747 Added p_mu0 to fitAssayDiff output by
Stevie Ped <stephen.pederson.au@gmail.com>2023-09-29 22:38:58 +0930;
314c247 Bugfix in mapGrlCols and added include argument by
Stevie Ped <stephen.pederson.au@gmail.com>2023-09-25 01:52:04 +0930;
1f7ffd4 Changed the method for adding regression lines by
Stevie Ped <stephen.pederson.au@gmail.com>2023-09-24 23:37:43 +0930;
de8e88c Version bump after updates by
Stevie Ped <stephen.pederson.au@gmail.com>2023-09-24 16:49:46 +0930;
b9c8b38 Added handling of unquoted variables for most plots by
Stevie Ped <stephen.pederson.au@gmail.com>2023-09-24 02:32:41 +0930;
d26cc05 Set addDiffStatus to drop unused levels when drop = TRUE by
Stevie Ped <stephen.pederson.au@gmail.com>2023-09-23 21:05:10 +0930;
9230f03 Updated input specification for dualFilter by
Stevie Ped <stephen.pederson.au@gmail.com>2023-09-23 17:43:28 +0930;
ba6b62e Enabled plotPie to become donut by
Stevie Ped <stephen.pederson.au@gmail.com>2023-09-03 18:42:34 +0930;
3439fcf Added option to rescale proportions for outer segments by
Stevie Ped <stephen.pederson.au@gmail.com>2023-09-03 15:26:13 +0930;
d95bd1a Improved arguments for plotOverlaps by
Stevie Ped <stephen.pederson.au@gmail.com>2023-08-27 19:50:40 +0930;
b868983 Version bump after adding `defineSeqinfo()` by
Stevie Ped <stephen.pederson.au@gmail.com>2023-08-26 23:30:51 +0930;
0b9ce71 Added ellipsis by
Stevie Ped <stephen.pederson.au@gmail.com>2023-08-26 23:30:31 +0930;
012e237 Added `defineSeqinfo()` by
Stevie Ped <stephen.pederson.au@gmail.com>2023-08-26 23:15:09 +0930;
ff1d670 Version bump by
Stevie Ped <stephen.pederson.au@gmail.com>2023-08-11 14:28:11 +0930;
1dc4ba7 Added type = "bed" by
Stevie Ped <stephen.pederson.au@gmail.com>2023-08-09 00:46:25 +0930;
1f3457b Bugfix in DESCRIPTION by
Stevie Ped <stephen.pederson.au@gmail.com>2023-08-09 00:46:08 +0930;
4e5c1fe Version bump after bugfixes by
Stevie Ped <stephen.pederson.au@gmail.com>2023-07-19 01:22:59 +0930;
c87e951 Bug fixes in mergeByHMP & fitAssayDiff by
Stevie Ped <stephen.pederson.au@gmail.com>2023-07-18 22:19:44 +0930;
55d013b Vesion bump after minor revisions by
Stevie Ped <stephen.pederson.au@gmail.com>2023-07-14 17:36:57 +0930;
f5b7284 Tweaked summaryLabelSide to turn off labels by
Stevie Ped <stephen.pederson.au@gmail.com>2023-07-13 02:08:07 +0930;
6a5583a Added summaryLabelSide by
Stevie Ped <stephen.pederson.au@gmail.com>2023-07-12 23:40:18 +0930;
2dfdb5a Fixed new bug by
Stevie Ped <stephen.pederson.au@gmail.com>2023-07-12 22:03:03 +0930;
a85c671 Added merging to keyval ranges by
Stevie Ped <stephen.pederson.au@gmail.com>2023-07-12 16:05:52 +0930;
9ba99cb Corrected setting of max width for plotHFGC by
Stevie Ped <stephen.pederson.au@gmail.com>2023-07-09 01:31:00 +0930;
099625f (origin/RELEASE_3_17, RELEASE_3_17) Bump to 1.4.6 after bugfixes by
Stevie Ped <stephen.pederson.au@gmail.com>2023-07-08 18:21:32 +0930;
959e428 Bugfixes in getProfileData and plotOverlaps by
Stevie Ped <stephen.pederson.au@gmail.com>2023-07-08 17:48:21 +0930;
849c8d1 Version bump after multiple bugfixes & tweaks by
Stevie Ped <stephen.pederson.au@gmail.com>2023-07-08 17:07:22 +0930;
74b170d Set doWeighting = FALSE, scaleOffsets and matched DiffBind methods for dispersions by
Stevie Ped <stephen.pederson.au@gmail.com>2023-07-07 22:30:38 +0930;
3c692e5 Added n_max to mergeByHMP by
Stevie Ped <stephen.pederson.au@gmail.com>2023-07-07 22:29:33 +0930;
0f83181 Bugfix in addDiffStatus. Added n_max to getProfileData by
Stevie Ped <stephen.pederson.au@gmail.com>2023-07-07 17:14:01 +0930;
a95332a Bugfix in getProfileData by
Stevie Ped <stephen.pederson.au@gmail.com>2023-07-06 02:44:10 +0930;
7d8243e Bugfix in plotOverlaps() by
Stevie Ped <stephen.pederson.au@gmail.com>2023-07-05 22:39:48 +0930;
abb35ef Added parameters for `makeConsensus()` to `plotPairwise()` by
Stevie Ped <stephen.pederson.au@gmail.com>2023-07-04 13:03:07 +0930;
bb78764 Bugfix in importPeaks and added glueNames by
Stevie Ped <stephen.pederson.au@gmail.com>2023-07-03 11:29:15 +0930;
115d50d Reverted importPeaks to custom methods by
Stevie Ped <stephen.pederson.au@gmail.com>2023-07-03 02:34:19 +0930;
49ce524 Bugfix in importPeaks by
Stevie Ped <stephen.pederson.au@gmail.com>2023-07-03 01:16:18 +0930;
e892d82 Version bump by
Stevie Ped <stephen.pederson.au@gmail.com>2023-07-02 23:58:40 +0930;
a98a667 Simplified mapping functions by
Stevie Ped <stephen.pederson.au@gmail.com>2023-07-02 23:24:33 +0930;
11d32d4 Added mapGrlCols by
Stevie Ped <stephen.pederson.au@gmail.com>2023-07-02 22:45:00 +0930;
ed52087 Shifted all imports to rtracklayer by
Stevie Ped <stephen.pederson.au@gmail.com>2023-07-02 13:24:36 +0930;
30237c4 Adding missing to addDiffStatus by
Stevie Ped <stephen.pederson.au@gmail.com>2023-07-01 12:43:27 +0930;
17694ba Bugfix in defineRegions by
Stevie Ped <stephen.pederson.au@gmail.com>2023-07-01 01:17:20 +0930;
3f53855 Bugfix in defineRegions by
Stevie Ped <stephen.pederson.au@gmail.com>2023-07-01 01:10:03 +0930;
5f4c065 Always simplified the region column in `defineRegions()` by
Stevie Ped <stephen.pederson.au@gmail.com>2023-06-30 22:21:58 +0930;
a580530 Added labels to `plotOverlaps()` and started using `.mcolnames` by
Stevie Ped <stephen.pederson.au@gmail.com>2023-06-29 23:31:58 +0930;
3a9fcb2 Tweaked sig_col by
Stevie Ped <stephen.pederson.au@gmail.com>2023-06-28 01:42:32 +0930;
da3c8b9 Version bump after bugfixes by
Stevie Ped <stephen.pederson.au@gmail.com>2023-06-28 01:08:14 +0930;
7c924c2 Version bump after new features by
Stevie Ped <stephen.pederson.au@gmail.com>2023-06-28 01:05:37 +0930;
5e509bc Added ability to nudge labels separately by
Stevie Ped <stephen.pederson.au@gmail.com>2023-06-28 00:52:33 +0930;
2fa1afe Added addDiffStatus by
Stevie Ped <stephen.pederson.au@gmail.com>2023-06-28 00:44:26 +0930;
ea16419 Fixed typo by
Stevie Ped <stephen.pederson.au@gmail.com>2023-06-27 23:17:11 +0930;
25b0cb3 Added plotPairwise by
Stevie Ped <stephen.pederson.au@gmail.com>2023-06-27 23:13:11 +0930;
d4bf6b1 Multiple bugfixes by
Stevie Ped <stephen.pederson.au@gmail.com>2023-06-27 21:10:13 +0930;
58f19e6 Multiple bugfixes by
Stevie Ped <stephen.pederson.au@gmail.com>2023-06-27 21:10:13 +0930;
8a80410 Fixed build error by
Stevie Ped <stephen.pederson.au@gmail.com>2023-06-24 17:38:28 +0930;
a864107 Version bump after fixing build error by
Stevie Ped <stephen.pederson.au@gmail.com>2023-06-24 17:24:34 +0930;
