Name Mode Size
..
DEG.rda 100755 12 kb
DEH.rda 100755 3 kb
background.rda 100755 83 kb
datTraits.rda 100755 0 kb
diffhetmatrix.rda 100755 2 kb
moduledm.rda 100755 1 kb
modulesil.rda 100755 3 kb
promoter.rda 100755 283 kb
sharedmatrix.rda 100755 20 kb
README.md
# epihet Introduction epiHet is a R package to calculate the intra-tumoral epigenetic heterogeneity and performing differentially epigenetic heterogeneity analysis from high-throughput bisulfite sequencing. epihet implements a biological network analysis workflow for transforming cancer type-specific differentially epigenetic heterogeneity loci into cancer-related biological function and clinical biomarker. How to use The input bam file may be obtained from bisseq pipeline (https://pbtech-vc.med.cornell.edu/git/thk2008/bisseq/tree/master/) for aligning bisulfite sequencing reads.