Graph of epigraHMM
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  • 2e759b7 (HEAD -> devel, origin/devel) bump x.y.z version to odd y following creation of RELEASE_3_18 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2023-10-24 11:33:52 -0400;
  • 810c6f9 (origin/RELEASE_3_18, RELEASE_3_18) bump x.y.z version to even y prior to creation of RELEASE_3_18 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2023-10-24 11:33:52 -0400;
  • 7a4ec94 (origin/RELEASE_3_17, RELEASE_3_17) version bump in release by Pedro Baldoni <pedrobaldoni@gmail.com> 2023-10-05 09:42:56 +1100;
  • e297365 bug fix: importing width by Pedro Baldoni <pedrobaldoni@gmail.com> 2023-10-05 09:40:26 +1100;
  • e9db479 version bump in devel by Pedro Baldoni <pedrobaldoni@gmail.com> 2023-10-05 09:41:07 +1100;
  • dbf35fa bug fix: importing width by Pedro Baldoni <pedrobaldoni@gmail.com> 2023-10-05 09:40:26 +1100;
  • e4cf2a0 version bump in release by Pedro Baldoni <pedrobaldoni@gmail.com> 2023-05-18 16:16:19 +1000;
  • 337761c Changing normalization to avoid underflow by Pedro Baldoni <pedrobaldoni@gmail.com> 2023-05-18 16:08:52 +1000;
  • dccc60a version bump in devel by Pedro Baldoni <pedrobaldoni@gmail.com> 2023-05-18 16:12:15 +1000;
  • bb58858 Changing normalization to avoid underflow by Pedro Baldoni <pedrobaldoni@gmail.com> 2023-05-18 16:08:52 +1000;
  • aa1020f Bump version to trigger rebuild and propagation of new Mac binary by J Wokaty <jwokaty@users.noreply.github.com> 2023-05-01 20:10:00 -0400;
  • 67a9b7b bump x.y.z version to odd y following creation of RELEASE_3_17 branch by J Wokaty <jwokaty@users.noreply.github.com> 2023-04-25 11:30:14 -0400;
  • cca5feb bump x.y.z version to even y prior to creation of RELEASE_3_17 branch by J Wokaty <jwokaty@users.noreply.github.com> 2023-04-25 11:30:14 -0400;
  • 5055b06 (origin/RELEASE_3_16, RELEASE_3_16) version bump in release by Pedro Baldoni <pedrobaldoni@gmail.com> 2023-03-23 09:07:04 +1100;
  • 3ad410e Updating NEWS by Pedro Baldoni <pedrobaldoni@gmail.com> 2023-03-23 08:55:15 +1100;
  • 0705711 bug fix: fix system2 commands in callPeaks by Pedro Baldoni <pedrobaldoni@gmail.com> 2023-03-23 08:52:59 +1100;
  • 3fad014 version bump in devel by Pedro Baldoni <pedrobaldoni@gmail.com> 2023-03-23 08:58:28 +1100;
  • 450ab40 Updating NEWS by Pedro Baldoni <pedrobaldoni@gmail.com> 2023-03-23 08:55:15 +1100;
  • 19cee26 bug fix: fix system2 commands in callPeaks by Pedro Baldoni <pedrobaldoni@gmail.com> 2023-03-23 08:52:59 +1100;
  • f443b6b Merge pull request <a href="#25">#25</a> from plbaldoni/RELEASE_3_16 by Pedro Baldoni <pedrobaldoni@gmail.com> 2023-03-09 10:33:05 +1100;
  • f43a38c Merge pull request <a href="#24">#24</a> from plbaldoni/master by Pedro Baldoni <pedrobaldoni@gmail.com> 2023-03-09 10:30:55 +1100;
  • 01bf0d0 version bump in release by Pedro Baldoni <pedrobaldoni@gmail.com> 2023-03-09 10:27:57 +1100;
  • 61b98e7 Merging with master by Pedro Baldoni <pedrobaldoni@gmail.com> 2023-03-09 10:27:37 +1100;
  • 03489ec (origin/master, origin/HEAD, master) version bump in devel by Pedro Baldoni <pedrobaldoni@gmail.com> 2023-03-09 10:15:46 +1100;
  • d1b78b0 Update news by Pedro Baldoni <pedrobaldoni@gmail.com> 2023-03-09 10:13:59 +1100;
  • 38eef1c Update RoxygenNote by Pedro Baldoni <pedrobaldoni@gmail.com> 2023-03-09 10:12:07 +1100;
  • aa27bfc Adjust checkPath function to overwrite files. No need for unit test anymore by Pedro Baldoni <pedrobaldoni@gmail.com> 2023-03-09 10:11:53 +1100;
  • ad272e6 Fix bedGraph output by properly reading in mixture posterior probabilities and creating gr.graph object. by Pedro Baldoni <pedrobaldoni@gmail.com> 2023-03-09 10:11:19 +1100;
  • 04ea4a4 Reading-in posterior probabilities and including method as input argument to the function by Pedro Baldoni <pedrobaldoni@gmail.com> 2023-03-09 10:09:46 +1100;
  • 1564c0c Adding new unit test for the output files written by callPeaks by Pedro Baldoni <pedrobaldoni@gmail.com> 2023-03-09 10:08:30 +1100;
  • cca087f Adding control check and including method as argument in saveOutputFiles by Pedro Baldoni <pedrobaldoni@gmail.com> 2023-03-09 10:07:59 +1100;
  • aaafeca Importing S4Vectors subjectHits to be used when saving output to file by Pedro Baldoni <pedrobaldoni@gmail.com> 2023-03-09 10:06:57 +1100;
  • 984b8a3 Merge pull request <a href="#22">#22</a> from plbaldoni/master by Pedro Baldoni <pedrobaldoni@gmail.com> 2023-01-23 08:08:41 +1100;
  • 7d4c2d8 Bump version to trigger rebuild and propagation of new Mac binary by J Wokaty <jwokaty@users.noreply.github.com> 2023-01-19 11:16:31 -0500;
  • 401d6b2 Bump version to trigger rebuild and propagation of new arm64 binary by J Wokaty <jwokaty@users.noreply.github.com> 2022-12-13 18:06:05 -0500;
  • 624c0c6 bump x.y.z version to odd y following creation of RELEASE_3_16 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2022-11-01 11:25:04 -0400;
  • 40c5ca9 bump x.y.z version to even y prior to creation of RELEASE_3_16 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2022-11-01 11:25:04 -0400;
  • 25664e6 bump x.y.z version to odd y following creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 16:16:15 +0000;
  • 82b8a69 (origin/RELEASE_3_15, RELEASE_3_15) bump x.y.z version to even y prior to creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 16:16:15 +0000;
  • 3b8b293 Fix version number by Pedro Baldoni <pedrobaldoni@gmail.com> 2022-01-14 09:32:38 +1100;
  • 837f8df Merge pull request <a href="#21">#21</a> from plbaldoni/RELEASE_3_14 by Pedro Baldoni <pedrobaldoni@gmail.com> 2022-01-14 09:28:34 +1100;
  • c4681f4 Merge branch 'main' into RELEASE_3_14 by Pedro Baldoni <pedrobaldoni@gmail.com> 2022-01-14 09:28:24 +1100;
  • 6dd50a9 Merge pull request <a href="#20">#20</a> from plbaldoni/master by Pedro Baldoni <pedrobaldoni@gmail.com> 2022-01-14 09:25:21 +1100;
  • 67481cd (origin/RELEASE_3_14, RELEASE_3_14) update RELEASE version number by Pedro Baldoni <pedrobaldoni@gmail.com> 2022-01-14 09:00:11 +1100;
  • a2e5af4 exporting estimateTransitionProb by Pedro Baldoni <pedrobaldoni@gmail.com> 2022-01-14 09:00:11 +1100;
  • 66a5528 Merge pull request <a href="#19">#19</a> from plbaldoni/master by Pedro Baldoni <pedrobaldoni@gmail.com> 2021-12-03 10:44:31 +1100;
  • 1336c00 Merge branch 'main' into master by Pedro Baldoni <pedrobaldoni@gmail.com> 2021-12-03 10:44:24 +1100;
  • 7d98986 Merge pull request <a href="#18">#18</a> from plbaldoni/RELEASE_3_14 by Pedro Baldoni <pedrobaldoni@gmail.com> 2021-12-03 10:44:04 +1100;
  • cf454c2 Merge branch 'main' into RELEASE_3_14 by Pedro Baldoni <pedrobaldoni@gmail.com> 2021-12-03 10:43:57 +1100;
  • aca2324 update RELEASE version number by Pedro Baldoni <pedrobaldoni@gmail.com> 2021-12-03 10:38:04 +1100;
  • c75facf bug fix: output paths with period & epigraHMMDataSetFromBam test by Pedro Baldoni <pedrobaldoni@gmail.com> 2021-12-03 10:38:04 +1100;
  • 5a47533 Merge pull request <a href="#17">#17</a> from plbaldoni/master by Pedro Baldoni <pedrobaldoni@gmail.com> 2021-12-02 09:18:35 +1100;
  • d08b894 Merge branch 'main' into master by Pedro Baldoni <pedrobaldoni@gmail.com> 2021-12-02 09:18:27 +1100;
  • e091df0 Merge pull request <a href="#16">#16</a> from plbaldoni/RELEASE_3_14 by Pedro Baldoni <pedrobaldoni@gmail.com> 2021-12-02 09:17:57 +1100;
  • 8c9f22f Merge branch 'main' into RELEASE_3_14 by Pedro Baldoni <pedrobaldoni@gmail.com> 2021-12-02 09:17:49 +1100;
  • 984dca9 Merge remote-tracking branch 'upstream/master' by Pedro Baldoni <pedrobaldoni@gmail.com> 2021-12-02 09:09:16 +1100;
  • 82d4743 bump x.y.z version to odd y following creation of RELEASE_3_14 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-10-26 17:10:21 +0000;
  • 57467ee bump x.y.z version to even y prior to creation of RELEASE_3_14 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-10-26 17:10:21 +0000;
  • d0ac9cc Merge pull request <a href="#15">#15</a> from plbaldoni/RELEASE_3_13 by Pedro Baldoni <pedrobaldoni@gmail.com> 2021-10-05 08:38:38 +1100;
  • 724cca6 Merge branch 'main' into RELEASE_3_13 by Pedro Baldoni <pedrobaldoni@gmail.com> 2021-10-05 08:38:23 +1100;
  • cc15968 Merge pull request <a href="#14">#14</a> from plbaldoni/master by Pedro Baldoni <pedrobaldoni@gmail.com> 2021-10-05 08:37:38 +1100;
  • 61cce4a Merge branch 'main' into master by Pedro Baldoni <pedrobaldoni@gmail.com> 2021-10-05 08:37:30 +1100;
  • 3d5f844 (origin/RELEASE_3_13, RELEASE_3_13) update RELEASE version number by Pedro Baldoni <pedrobaldoni@gmail.com> 2021-10-05 08:32:44 +1100;
  • c70c349 bug fix: adding S4Vectors to maxStepProb manual by Pedro Baldoni <pedrobaldoni@gmail.com> 2021-10-05 08:32:44 +1100;
  • 120f54b Merge pull request <a href="#13">#13</a> from plbaldoni/RELEASE_3_13 by Pedro Baldoni <pedrobaldoni@gmail.com> 2021-10-03 17:46:31 +1100;
  • 905484c Merge branch 'main' into RELEASE_3_13 by Pedro Baldoni <pedrobaldoni@gmail.com> 2021-10-03 17:46:21 +1100;
  • 274b5c0 Merge pull request <a href="#12">#12</a> from plbaldoni/master by Pedro Baldoni <pedrobaldoni@gmail.com> 2021-10-03 17:45:39 +1100;
  • 12a2100 Merge branch 'main' into master by Pedro Baldoni <pedrobaldoni@gmail.com> 2021-10-03 17:45:30 +1100;
  • 79702aa update RELEASE version number by Pedro Baldoni <pedrobaldoni@gmail.com> 2021-10-03 17:39:50 +1100;
  • a877c78 Exporting maxStepProb and simulateMarkovChain by Pedro Baldoni <pedrobaldoni@gmail.com> 2021-10-03 17:39:50 +1100;
  • cc0de04 Merge pull request <a href="#11">#11</a> from plbaldoni/RELEASE_3_13 by Pedro Baldoni <pedrobaldoni@gmail.com> 2021-10-01 09:02:15 +1000;
  • 99a31e7 Merge branch 'main' into RELEASE_3_13 by Pedro Baldoni <pedrobaldoni@gmail.com> 2021-10-01 09:02:07 +1000;
  • 630bfc2 Merge pull request <a href="#10">#10</a> from plbaldoni/master by Pedro Baldoni <pedrobaldoni@gmail.com> 2021-10-01 09:01:42 +1000;
  • dd53cc5 Merge branch 'main' into master by Pedro Baldoni <pedrobaldoni@gmail.com> 2021-10-01 09:01:35 +1000;
  • 50d3b0f update RELEASE version number by Pedro Baldoni <pedrobaldoni@gmail.com> 2021-10-01 08:49:07 +1000;
  • 0a60868 bug fix: my bug fix by Pedro Baldoni <pedrobaldoni@gmail.com> 2021-10-01 08:49:07 +1000;
  • 43e9899 Merge pull request <a href="#9">#9</a> from plbaldoni/RELEASE_3_13 by Pedro Baldoni <pedrobaldoni@gmail.com> 2021-09-28 11:53:55 +1000;
  • 836d018 Merge branch 'main' into RELEASE_3_13 by Pedro Baldoni <pedrobaldoni@gmail.com> 2021-09-28 11:53:47 +1000;
  • cf306a8 Merge pull request <a href="#8">#8</a> from plbaldoni/master by Pedro Baldoni <pedrobaldoni@gmail.com> 2021-09-28 11:53:17 +1000;
  • 79d8b9d Merge branch 'main' into master by Pedro Baldoni <pedrobaldoni@gmail.com> 2021-09-28 11:53:08 +1000;
  • a716fac update RELEASE version number by Pedro Baldoni <pedrobaldoni@gmail.com> 2021-09-28 11:50:56 +1000;
  • 5404750 update RELEASE version number by Pedro Baldoni <pedrobaldoni@gmail.com> 2021-09-28 11:47:04 +1000;
  • df53cec Version bump by Pedro Baldoni <pedrobaldoni@gmail.com> 2021-09-28 11:47:04 +1000;
  • e2825e7 Adding NEWS by Pedro Baldoni <pedrobaldoni@gmail.com> 2021-09-28 11:46:23 +1000;
  • 4c030dc Updating manual by Pedro Baldoni <pedrobaldoni@gmail.com> 2021-09-28 11:46:13 +1000;
  • 06734d0 Explict importing from S4Vectors and utils by Pedro Baldoni <pedrobaldoni@gmail.com> 2021-09-28 11:45:50 +1000;
  • e00402a Exporting expStep function by Pedro Baldoni <pedrobaldoni@gmail.com> 2021-09-28 11:44:46 +1000;
  • 71f57bc Merge pull request <a href="#7">#7</a> from plbaldoni/RELEASE_3_13 by Pedro Baldoni <pedrobaldoni@gmail.com> 2021-09-22 21:34:15 +1000;
  • 98e4b5f Merge branch 'main' into RELEASE_3_13 by Pedro Baldoni <pedrobaldoni@gmail.com> 2021-09-22 21:34:06 +1000;
  • baac512 Merge pull request <a href="#6">#6</a> from plbaldoni/master by Pedro Baldoni <pedrobaldoni@gmail.com> 2021-09-22 21:32:54 +1000;
  • 7904249 update RELEASE version number by Pedro Baldoni <pedrobaldoni@gmail.com> 2021-09-22 21:24:37 +1000;
  • 34b3617 Version bump by Pedro Baldoni <pedrobaldoni@gmail.com> 2021-09-22 21:24:37 +1000;
  • 4a52aa8 - Adding better description of blacklist and gap tracks in epigraHMM - Adding new section about printing combinatorial patterns - Adding new section about model pruning by Pedro Baldoni <pedrobaldoni@gmail.com> 2021-09-22 21:24:15 +1000;
  • accb490 Using new getPatterns function by Pedro Baldoni <pedrobaldoni@gmail.com> 2021-09-22 21:22:41 +1000;
  • 704b3ac Adding combinatorial pruning conditional by Pedro Baldoni <pedrobaldoni@gmail.com> 2021-09-22 21:22:23 +1000;
  • 34617f5 - Fixing deprecated ggplot::guides FALSE - Fix blacklist lookup for the case where genome is a GRanges object by Pedro Baldoni <pedrobaldoni@gmail.com> 2021-09-22 21:22:08 +1000;
  • c4f28b1 Adding new functions: by Pedro Baldoni <pedrobaldoni@gmail.com> 2021-09-22 21:21:12 +1000;
  • 678eea0 Exporting combinatorial patterns table by Pedro Baldoni <pedrobaldoni@gmail.com> 2021-09-22 21:12:16 +1000;
  • 89e53f2 Adding new arguments that are used for the pruning strategy by Pedro Baldoni <pedrobaldoni@gmail.com> 2021-09-22 21:03:38 +1000;
  • e97266f Adding new function to print results from epigraHMM by Pedro Baldoni <pedrobaldoni@gmail.com> 2021-09-22 21:02:42 +1000;