Graph ofenhancerHomologSearch
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  • 885528e (HEAD -> master, origin/master, origin/HEAD) bump x.y.z version to odd y following creation of RELEASE_3_16 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2022-11-01 11:25:27 -0400;
  • aa6b39b (origin/RELEASE_3_16, RELEASE_3_16) bump x.y.z version to even y prior to creation of RELEASE_3_16 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2022-11-01 11:25:27 -0400;
  • 813cd5c improve the speed for searchTFBP by JIANHONG OU <jianhong@users.noreply.github.com> 2022-06-29 11:22:04 -0400;
  • 853f65a fix the issue for sample size is bigger than shuffled sequences. by JIANHONG OU <jianhong@users.noreply.github.com> 2022-06-28 17:39:17 -0400;
  • 23873f8 add ushuffle by JIANHONG OU <jianhong@users.noreply.github.com> 2022-06-28 17:08:45 -0400;
  • c0d0d37 Add reverseComplement search for conservedMotifs. by JIANHONG OU <jianhong@users.noreply.github.com> 2022-06-28 12:54:55 -0400;
  • f852a6a fix the issue if more than 2 Enhancers for conservedMotifs. by JIANHONG OU <jianhong@users.noreply.github.com> 2022-06-27 16:33:39 -0400;
  • a8c1ba2 add html output for conservedMotifs by JIANHONG OU <jianhong@users.noreply.github.com> 2022-06-27 16:13:25 -0400;
  • 893ea2a Add support for HTML output for the alignment. by JIANHONG OU <jianhong@users.noreply.github.com> 2022-06-27 11:22:34 -0400;
  • 5e63aae Add support for multiple alignments for alignment function. by JIANHONG OU <jianhong@users.noreply.github.com> 2022-06-24 10:06:04 -0400;
  • 3ab0c23 Add suport for import GRanges directly for getENCODEdata by JIANHONG OU <jianhong@users.noreply.github.com> 2022-06-10 13:57:00 -0400;
  • 87da7ad bump x.y.z version to odd y following creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 16:17:35 +0000;
  • 45c23eb (origin/RELEASE_3_15, RELEASE_3_15) bump x.y.z version to even y prior to creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 16:17:35 +0000;
  • 33957ae (origin/RELEASE_3_14, RELEASE_3_14) Try to fix the error in windows build by JIANHONG OU <jianhong@users.noreply.github.com> 2022-03-26 10:31:45 -0400;
  • f1424c1 Fix the warning for enumeration value not handled in switch. by JIANHONG OU <jianhong@users.noreply.github.com> 2022-03-18 11:33:49 -0400;
  • 603b621 bump x.y.z version to odd y following creation of RELEASE_3_14 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-10-26 17:11:45 +0000;
  • 46463b4 bump x.y.z version to even y prior to creation of RELEASE_3_14 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-10-26 17:11:45 +0000;
  • c3bb473 Try to get more error information from BioC build by JIANHONG OU <jianhong@users.noreply.github.com> 2021-09-29 14:05:38 -0400;
  • 099f926 Fix the wrong motif PWMs. by JIANHONG OU <jianhong@users.noreply.github.com> 2021-09-27 15:21:17 -0400;
  • bfbd446 Fix the wrong motif PWMs by JIANHONG OU <jianhong@users.noreply.github.com> 2021-09-21 18:07:12 -0400;
  • 50889c7 Delete .DS_Store by JIANHONG OU <jianhong@users.noreply.github.com> 2021-09-21 16:51:41 -0400;
  • d046c28 Fix a typo in vignette. by JIANHONG OU <jianhong@users.noreply.github.com> 2021-09-17 15:11:30 -0400;
  • 9eca9d9 update the extdata aln_mm.rds by JIANHONG OU <jianhong@users.noreply.github.com> 2021-09-16 14:34:20 -0400;
  • e6ee8c3 Add searchTFBPS function by JIANHONG OU <jianhong@users.noreply.github.com> 2021-09-16 14:18:17 -0400;
  • 861a102 Add motifConsensus argument for saveAlignments function. by JIANHONG OU <jianhong@users.noreply.github.com> 2021-09-13 11:16:51 -0400;
  • 4ca2e24 Add Makevars.win. by JIANHONG OU <jianhong@users.noreply.github.com> 2021-08-23 09:51:43 -0400;
  • e6b6ce2 dix the make error: 'logf' was not declared in this scope. by JIANHONG OU <jianhong@users.noreply.github.com> 2021-08-19 12:04:10 -0400;
  • 7bf6852 change sprintf to snprintf for Muscle/typetostr.cpp by JIANHONG OU <jianhong@users.noreply.github.com> 2021-08-04 13:23:29 -0400;
  • 2ad7052 Remove functions contain fgets. by JIANHONG OU <jianhong@users.noreply.github.com> 2021-08-04 10:30:03 -0400;
  • b8b3f45 update the sample data al. by JIANHONG OU <jianhong@users.noreply.github.com> 2021-08-03 14:16:18 -0400;
  • 8af35a7 remove the so file from src folder by JIANHONG OU <jianhong@users.noreply.github.com> 2021-08-03 09:48:17 -0400;
  • 0d1179c remode the dependence of msa. by JIANHONG OU <jianhong@users.noreply.github.com> 2021-08-02 18:28:10 -0400;
  • cd3518d bump up the version number. by jianhong <jianhong.ou@gmail.com> 2021-07-27 15:53:31 -0400;
  • fcf0e41 Fix the issues listed in [#2181](https://github.com/Bioconductor/Contributions/issues/2181) by jianhong <jianhong.ou@gmail.com> 2021-07-21 23:04:42 -0400;
  • 4854459 fix the mis-link of genome in examples of alignment. by jianhong <jianhong.ou@gmail.com> 2021-07-08 15:15:50 -0400;
  • 5f5360e Merge remote-tracking branch 'origin/staging' by jianhong <jianhong.ou@gmail.com> 2021-07-07 16:20:45 -0400;
  • de24601 prepare for submission. by jianhong <jianhong.ou@gmail.com> 2021-07-07 16:19:55 -0400;
  • 6f6f2cb Merge remote-tracking branch 'origin/staging' by jianhong <jianhong.ou@gmail.com> 2021-07-07 15:14:44 -0400;
  • 754afa5 drop ENCODExplorer by jianhong <jianhong.ou@gmail.com> 2021-07-07 13:29:20 -0400;
  • 93dc1c0 Merge remote-tracking branch 'origin/staging' by jianhong <jianhong.ou@gmail.com> 2021-06-22 11:04:37 -0400;
  • 966f8c6 update documentation to avoid write output to build folder. by jianhong <jianhong.ou@gmail.com> 2021-06-22 11:04:03 -0400;
  • dc343f4 remove github workflow from main branch by jianhong <jianhong.ou@gmail.com> 2021-06-22 09:29:13 -0400;
  • 2d95ebc Initial the package by jianhong <jianhong.ou@gmail.com> 2021-06-21 19:58:46 -0400;
  • 322af06 Initial commit by JIANHONG OU <jianhong@users.noreply.github.com> 2021-06-21 17:33:40 -0400;