# Change in 1.3.4 o Improve the speed for searchTFBP. # Change in 1.3.3 o Add reverseComplement for conservedMotifs search. # Change in 1.3.2 o Add support for multiple alignment for alignment function. o Add support for HTML output for the alignment. # Change in 1.3.1 o Add support for import GRanges directly for getENCODEdata. # Change in 1.1.1 o Fix the warning for enumeration value not handled in switch [-Wswitch] # Change in 0.99.17 o Try to get more error information from BioC build. # Change in 0.99.16 o Fix the wrong motif PWMs. # Change in 0.99.15 o Fix the wrong motif PWMs. # Change in 0.99.14 o Fix a typo in vignette. # Change in 0.99.13 o Add function searchTFBPS. # Change in 0.99.12 o Update the documentation. o Add motifConsensus argument for saveAlignments function. # Change in 0.99.11 o Fix typos in documentation. # Change in 0.99.10 o Add Makevars.win file to clean .o files in src. # Change in 0.99.9 o fix the make error: 'logf' was not declared in this scope. # Change in 0.99.8 o Change sprintf to snprintf for Muscle/typetostr.cpp:14:22. # Change in 0.99.7 o Remove functions contain fgets. # Change in 0.99.6 o Update the sample data al. # Change in 0.99.5 o Remove the so file from src folder. # Change in 0.99.4 o Remove the dependence of msa. # Change in 0.99.2 o Fix the issues listed in [#2181](https://github.com/Bioconductor/Contributions/issues/2181) # Change in 0.99.1 o fix the mis-link of genome in examples of alignment. # Change in 0.99.0 o Update the DESCRIPTION. o Update documentation of enhancers and saveAlignments # Change in 0.1.2 o drop ENCODExplorer.