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..
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| DGEList.R |
100644 |
6 kb |
| S3methods.R |
100644 |
3 kb |
| SE2DGEList.R |
100644 |
1 kb |
| Seurat2PB.R |
100644 |
2 kb |
| addPriorCount.R |
100644 |
1 kb |
| adjustedProfileLik.R |
100644 |
2 kb |
| aveLogCPM.R |
100644 |
3 kb |
| binomTest.R |
100644 |
1 kb |
| calcNormFactors.R |
100644 |
8 kb |
| calcNormOffsets.R |
100644 |
1 kb |
| catchKallisto.R |
100644 |
2 kb |
| catchSalmon.R |
100644 |
3 kb |
| classes.R |
100644 |
1 kb |
| combine.R |
100644 |
1 kb |
| commonCondLogLikDerDelta.R |
100644 |
0 kb |
| condLogLikDerDelta.R |
100644 |
1 kb |
| condLogLikDerSize.R |
100644 |
1 kb |
| cpm.R |
100644 |
3 kb |
| cpmByGroup.R |
100644 |
1 kb |
| cutWithMinN.R |
100644 |
2 kb |
| decidetestsDGE.R |
100644 |
2 kb |
| dglmStdResid.R |
100644 |
1 kb |
| diffSpliceDGE.R |
100644 |
11 kb |
| dispBinTrend.R |
100644 |
3 kb |
| dispCoxReid.R |
100644 |
2 kb |
| dispCoxReidInterpolateTagwise.R |
100644 |
2 kb |
| dispCoxReidPowerTrend.R |
100644 |
1 kb |
| dispCoxReidSplineTrend.R |
100644 |
2 kb |
| dispDeviance.R |
100644 |
2 kb |
| dispPearson.R |
100644 |
2 kb |
| dropEmptyLevels.R |
100644 |
0 kb |
| edgeRUsersGuide.R |
100644 |
0 kb |
| effectiveLibSizes.R |
100644 |
1 kb |
| equalizeLibSizes.R |
100644 |
2 kb |
| estimateCommonDisp.R |
100644 |
2 kb |
| estimateDisp.R |
100644 |
12 kb |
| estimateGLMCommonDisp.R |
100644 |
2 kb |
| estimateGLMRobustDisp.R |
100644 |
3 kb |
| estimateGLMTagwiseDisp.R |
100644 |
2 kb |
| estimateGLMTrendedDisp.R |
100644 |
2 kb |
| estimateTagwiseDisp.R |
100644 |
4 kb |
| estimateTrendedDisp.R |
100644 |
2 kb |
| exactTest.R |
100644 |
4 kb |
| exactTestBetaApprox.R |
100644 |
1 kb |
| exactTestByDeviance.R |
100644 |
1 kb |
| exactTestBySmallP.R |
100644 |
2 kb |
| exactTestDoubleTail.R |
100644 |
2 kb |
| expandAsMatrix.R |
100644 |
1 kb |
| featureCounts2DGEList.R |
100644 |
5 kb |
| filterByExpr.R |
100644 |
2 kb |
| geneset-DGEGLM.R |
100644 |
4 kb |
| geneset-DGEList.R |
100644 |
5 kb |
| getCounts.R |
100644 |
0 kb |
| getDispersion.R |
100644 |
1 kb |
| getOffset.R |
100644 |
1 kb |
| getPriorN.R |
100644 |
1 kb |
| gini.R |
100644 |
0 kb |
| glmQLFTest.R |
100644 |
10 kb |
| glmTreat.R |
100644 |
6 kb |
| glmfit.R |
100644 |
8 kb |
| goana.R |
100644 |
2 kb |
| gof.R |
100644 |
1 kb |
| goodTuring.R |
100644 |
2 kb |
| kegga.R |
100644 |
2 kb |
| locfitByCol.R |
100644 |
0 kb |
| loessByCol.R |
100644 |
1 kb |
| maPlot.R |
100644 |
2 kb |
| makeCompressedMatrix.R |
100644 |
12 kb |
| maximizeInterpolant.R |
100644 |
1 kb |
| maximizeQuadratic.R |
100644 |
1 kb |
| meanvar.R |
100644 |
6 kb |
| mglmLevenberg.R |
100644 |
2 kb |
| mglmOneGroup.R |
100644 |
1 kb |
| mglmOneWay.R |
100644 |
3 kb |
| modelMatrixMeth.R |
100644 |
1 kb |
| movingAverageByCol.R |
100644 |
1 kb |
| nbinomDeviance.R |
100644 |
2 kb |
| nearestReftoX.R |
100644 |
0 kb |
| nearestTSS.R |
100644 |
4 kb |
| normLibSizes.R |
100644 |
4 kb |
| normalizeChIPtoInput.R |
100644 |
4 kb |
| plotBCV.R |
100644 |
2 kb |
| plotMD.R |
100644 |
4 kb |
| plotMDS.DGEList.R |
100644 |
4 kb |
| plotSmear.R |
100644 |
2 kb |
| predFC.R |
100644 |
1 kb |
| processAmplicons.R |
100644 |
13 kb |
| q2qnbinom.R |
100644 |
3 kb |
| read10X.R |
100644 |
2 kb |
| readBismark2DGE.R |
100644 |
2 kb |
| readDGE.R |
100644 |
2 kb |
| residDF.R |
100644 |
2 kb |
| rowsum.R |
100644 |
1 kb |
| rpkm.R |
100644 |
3 kb |
| rpkmByGroup.R |
100644 |
2 kb |
| scaleOffset.R |
100644 |
1 kb |
| spliceVariants.R |
100644 |
9 kb |
| splitIntoGroups.R |
100644 |
1 kb |
| splitIntoGroupsPseudo.R |
100644 |
0 kb |
| subsetting.R |
100644 |
3 kb |
| sumTechReps.R |
100644 |
1 kb |
| systematicSubset.R |
100644 |
0 kb |
| thinCounts.R |
100644 |
1 kb |
| topTags.R |
100644 |
2 kb |
| validDGEList.R |
100644 |
0 kb |
| voomLmFit.R |
100644 |
9 kb |
| weightedCondLogLikDerDelta.R |
100644 |
0 kb |
| zscoreNBinom.R |
100644 |
2 kb |
| zscoreNBinomRand.R |
100644 |
1 kb |
| zzz.R |
100644 |
0 kb |
