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Restore correction behaviour of .isAllZero() and DGEList() when count matrix has zero length.Gordon Smyth authored on 26/09/2018 08:54:21 |
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Update DESCRIPTION date.Gordon Smyth authored on 23/09/2018 07:12:17 |
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edgeR 3.22.4 - Bug fix to column name returned by decideTestsDGE(). - Improved error messages from DGEList(). - Note added to readBismark2DGE() help page. - Edit to readBismark2DGE code (not user-visible).Gordon Smyth authored on 23/09/2018 07:10:19 |
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Export scaleOffset S3 methods.Gordon Smyth authored on 21/06/2018 08:03:07 |
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edgeR 3.22.3 - New function readBismark2DGE() to read methylation coverage files created by Bismark.Gordon Smyth authored on 21/06/2018 07:40:33 |
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edgeR 3.22.2 - bug fix to glmfit.default when lib.size is specified. - rowsum.DGEList now removes annotation columns that are not group-level. - add Details section to filterByExpr.Rd.Gordon Smyth authored on 23/05/2018 09:51:50 |
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Completing previous committ.Gordon Smyth authored on 02/05/2018 09:30:15 |
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zscoreNBinom now supports non-integer q values.Gordon Smyth authored on 02/05/2018 09:24:01 |
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bump x.y.z versions to even y prior to creation of RELEASE_3_7 branchvobencha authored on 30/04/2018 14:35:10 |
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Bug fix to nbinomDeviance and nbinomUnitDeviance when y and dispersion are both vectors.Gordon Smyth authored on 27/04/2018 09:23:13 |
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Update tests.Yunshun Chen authored on 25/04/2018 00:32:51 |
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edgeR 3.21.10 - Fix incorrect implementation of weights in adjustedProfileLik; - nbinomUnitDeviance now respects vectors; - Change glmTreat default to lfc=log2(1.2); - Update the user's guide; - Update NEWS.Rd.Yunshun Chen authored on 24/04/2018 07:11:24 |
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Fixed a bug in cpmByGroup().Yunshun Chen authored on 26/02/2018 01:17:28 |
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edgeR 3.21.9 - New 'rowsum' method for DGEList objects; - Fixed a bug in cpmByGroup(); - Edited the help page for goana() and kegga().Yunshun Chen authored on 26/02/2018 01:14:38 |
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edgeR 3.21.8 - New function read10X to read 10X Genomics files; - Implemented more CompressedMatrix methods to avoid user-side errors; - DGEList takes 'group' from 'samples' only if samples has a column called group.Yunshun Chen authored on 02/02/2018 00:05:42 |