December 12, 2016
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edgeR 3.16.5 - New function scaleOffset() to ensure scale of offsets are consistent with library sizes.

Yunshun Chen authored on 12/12/2016 00:42:43
November 26, 2016
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Remove unnRemove unnecessary check from add_prior.cpp. Remove compiled line from DESCRIPTION

Gordon Smyth authored on 26/11/2016 09:47:06
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edgeR 3.16.4 - roast.DGEList, mroast.DGEList, fry.DGEList and camera.DGEList now have explicit arguments instead of passing arguments with ... to the default method. - plotMDS.DGEList has new argument 'plot'

Gordon Smyth authored on 26/11/2016 09:31:23
November 15, 2016
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edgeR 3.16.3 - Respect supplied offset in internal aveLogCPM() calls; - Converted output to a compressedMatrix in addPriorCount(); - Make sure glmTreat() doesn't give error when unshrunk.coefficients are NA.

Yunshun Chen authored on 15/11/2016 23:54:55
November 6, 2016
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edgeR 3.16.2 - Avoid error with zero library sizes in cpm().

Yunshun Chen authored on 06/11/2016 23:27:13
October 25, 2016
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Update NEWS.Rd

Yunshun Chen authored on 25/10/2016 02:57:08
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edgeR 3.16.1 - Fixed a bug in R_compute_nbdev.cpp

Yunshun Chen authored on 25/10/2016 02:54:48
October 17, 2016
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Creating branch for BioC 3.4 release

Herve Pages authored on 17/10/2016 19:00:47
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bump x.y.z versions to even 'y' prior to creation of 3_4 branch

Herve Pages authored on 17/10/2016 18:45:06
October 14, 2016
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Rename glmTreat argument 'powerful' to 'null'

Yunshun Chen authored on 14/10/2016 03:02:51
October 5, 2016
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Minor edits to C++ code

Yunshun Chen authored on 05/10/2016 04:25:13
October 4, 2016
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edgeR 3.15.6 - improved memory efficiency - modified glmTreat() behaviour - incorporated weights to estimateDisp() - added makeCompressedMatrix(), addPriorCount()

Yunshun Chen authored on 04/10/2016 23:59:20
June 30, 2016
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Edits to the DESCRIPTION

Yunshun Chen authored on 30/06/2016 01:47:59
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edgeR 3.15.2 - Bug fix in glmTreat() - Import locfit in NAMESPACE - Simplify CITATION entry - Change F77_NAME to F77_CALL in C functions - Add R code in normalization section of the User's Guide

Yunshun Chen authored on 30/06/2016 01:44:00
May 3, 2016
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bump version after creating 3.3 branch

Dan Tenenbaum authored on 03/05/2016 21:30:44