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  • 58b9251 (HEAD -> master, origin/master, origin/HEAD) bump x.y.z version to odd y following creation of RELEASE_3_16 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2022-11-01 11:15:08 -0400;
  • 2cf63ca (origin/RELEASE_3_16, RELEASE_3_16) bump x.y.z version to even y prior to creation of RELEASE_3_16 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2022-11-01 11:15:08 -0400;
  • 40307f0 bump x.y.z version to odd y following creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 15:38:45 +0000;
  • 875ef90 (origin/RELEASE_3_15, RELEASE_3_15) bump x.y.z version to even y prior to creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 15:38:45 +0000;
  • b8df8ac Bump version number by Max McGrath <max.a.mcgrath@gmail.com> 2022-02-02 07:43:22 -0700;
  • 006f9aa Merge BIOC changes by Max McGrath <max.a.mcgrath@gmail.com> 2022-02-02 07:40:49 -0700;
  • 43f64cc Bump version number removing stray merge markers from SVN days by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-02-02 09:12:12 -0500;
  • 7fa60ef Remove merge conflict by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-02-02 09:08:38 -0500;
  • 1523b91 Update comments by Max McGrath <max.a.mcgrath@gmail.com> 2022-01-28 16:10:25 -0700;
  • 09a5cac Bump version number by Max McGrath <max.a.mcgrath@gmail.com> 2022-01-28 16:10:08 -0700;
  • 6892644 Update PI constant by Max McGrath <max.a.mcgrath@gmail.com> 2022-01-28 15:40:24 -0700;
  • 1ffbc8e Merge BIOC version bump by Max McGrath <max.a.mcgrath@gmail.com> 2022-01-28 15:15:49 -0700;
  • bb3b476 bump x.y.z version to odd y following creation of RELEASE_3_14 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-10-26 16:32:49 +0000;
  • 7872d84 (origin/RELEASE_3_14, RELEASE_3_14) bump x.y.z version to even y prior to creation of RELEASE_3_14 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-10-26 16:32:49 +0000;
  • e2f1357 Update version number by Max McGrath <max.a.mcgrath@gmail.com> 2021-10-21 12:20:12 -0400;
  • 918c793 Update version number by Max McGrath <max.a.mcgrath@gmail.com> 2021-10-21 11:21:38 -0400;
  • cd273da Roxygen version, Rcpp control statement by Max McGrath <max.a.mcgrath@gmail.com> 2021-10-20 18:57:45 -0600;
  • 4f52c99 Data in vignette, NEWS, other small changes by Max McGrath <max.a.mcgrath@gmail.com> 2021-10-15 13:11:10 -0600;
  • e872935 Update R version, license, description by Max McGrath <max.a.mcgrath@gmail.com> 2021-10-15 13:08:08 -0600;
  • 506de57 Relocate error handling by Max McGrath <max.a.mcgrath@gmail.com> 2021-10-13 12:37:08 -0600;
  • a542575 Update Vignette by Max McGrath <max.a.mcgrath@gmail.com> 2021-10-13 11:43:47 -0600;
  • e4077d1 Update subsampling section of vignette by Max McGrath <max.a.mcgrath@gmail.com> 2021-09-30 16:10:08 -0600;
  • 07be6d6 Update subsampling error handling, add subSize arg by Max McGrath <max.a.mcgrath@gmail.com> 2021-09-29 17:07:31 -0600;
  • 0a82f1a Remove subSize from documentation by Max McGrath <max.a.mcgrath@gmail.com> 2021-09-29 15:31:51 -0600;
  • 505f74f Fix error handling bug by Max McGrath <max.a.mcgrath@gmail.com> 2021-09-29 15:31:32 -0600;
  • f747838 Remove old vignette, bump version number by Max McGrath <max.a.mcgrath@gmail.com> 2021-09-27 17:08:49 -0600;
  • 24a3c50 Move divide-by-zero error handling to cpp fun by Max McGrath <max.a.mcgrath@gmail.com> 2021-09-23 16:08:14 -0600;
  • 9412e77 Refactor discordantRun output chunk by Max McGrath <max.a.mcgrath@gmail.com> 2021-09-22 17:34:22 -0600;
  • f715cff Refactor subsampling, remove subSize argument by Max McGrath <max.a.mcgrath@gmail.com> 2021-09-22 16:39:44 -0600;
  • 58f781c Enable subsampling for within -omics by Max McGrath <max.a.mcgrath@gmail.com> 2021-09-22 15:52:00 -0600;
  • 526d0be Handle case with insufficient data by Max McGrath <max.a.mcgrath@gmail.com> 2021-09-01 11:03:57 -0600;
  • 00abe91 Refactor and add function to NAMESPACE by Max McGrath <max.a.mcgrath@gmail.com> 2021-08-12 11:17:54 -0600;
  • 9f885af Update documentation to Roxygen2 by Max McGrath <max.a.mcgrath@gmail.com> 2021-08-04 16:21:24 -0600;
  • 3c09447 Update vignette by Max McGrath <max.a.mcgrath@gmail.com> 2021-08-04 14:34:28 -0600;
  • 5a07c59 Adds README, other small changes by Max McGrath <max.a.mcgrath@gmail.com> 2021-07-23 12:16:50 -0600;
  • b9f704f Refactors discordantRun() by Max McGrath <max.a.mcgrath@gmail.com> 2021-07-23 11:21:57 -0600;
  • 88b078a Adds function for cV() param validation by Max McGrath <max.a.mcgrath@gmail.com> 2021-07-23 11:18:10 -0600;
  • 9acbc64 Refactors createVectors by Max McGrath <max.a.mcgrath@gmail.com> 2021-07-23 09:48:34 -0600;
  • a139677 Improves param validation, fixes SparCC bug by Max McGrath <max.a.mcgrath@gmail.com> 2021-07-22 12:40:36 -0600;
  • c7434b5 Breaks up discordant.R into multiple files by Max McGrath <max.a.mcgrath@gmail.com> 2021-07-22 11:38:58 -0600;
  • 1948fef Bumps R version, adds package documentation by Max McGrath <max.a.mcgrath@gmail.com> 2021-07-22 11:35:32 -0600;
  • f84408f Updates C to RCpp, begins using Roxygen2 by Max McGrath <max.a.mcgrath@gmail.com> 2021-07-22 09:30:05 -0600;
  • 5be4dd8 Fixes DESCRIPTION typo by Max McGrath <max.a.mcgrath@gmail.com> 2021-06-16 11:46:33 -0600;
  • bdebc44 Merge remote-tracking branch 'upstream/master' into master by Max McGrath <max.a.mcgrath@gmail.com> 2021-06-16 11:40:40 -0600;
  • 4306712 Adds myself as maintainer, expands gitignore by Max McGrath <max.a.mcgrath@gmail.com> 2021-06-16 11:27:43 -0600;
  • bfd907e Fixes correlation vector labels and SparCC bug by Max McGrath <max.a.mcgrath@gmail.com> 2021-05-24 15:59:18 -0600;
  • 8a52230 bump x.y.z version to odd y following creation of RELEASE_3_13 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-05-19 16:25:38 +0000;
  • c57e96b (origin/RELEASE_3_13, RELEASE_3_13) bump x.y.z version to even y prior to creation of RELEASE_3_13 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-05-19 16:25:38 +0000;
  • d444b52 bump x.y.z version to odd y following creation of RELEASE_3_12 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-10-27 11:21:09 -0400;
  • 33f13a5 (origin/RELEASE_3_12, RELEASE_3_12) bump x.y.z version to even y prior to creation of RELEASE_3_12 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-10-27 11:21:09 -0400;
  • d238fb2 bump x.y.z version to odd y following creation of RELEASE_3_11 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-04-27 19:04:58 +0000;
  • 29818da (origin/RELEASE_3_11, RELEASE_3_11) bump x.y.z version to even y prior to creation of RELEASE_3_11 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-04-27 19:04:58 +0000;
  • 4841341 bump x.y.z version to odd y after creation of RELEASE_3_10 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-10-29 13:42:14 -0400;
  • 11e6f2c (origin/RELEASE_3_10) bump x.y.z version to even y prior to creation of RELEASE_3_10 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-10-29 13:10:16 -0400;
  • 55a5de4 bump x.y.z versions to odd y after creation of RELEASE_3_9 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-05-02 12:14:11 -0400;
  • ad19455 (origin/RELEASE_3_9, RELEASE_3_9) bump x.y.z versions to even y prior to creation of RELEASE_3_9 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-05-02 11:54:05 -0400;
  • d3336f0 (origin/RELEASE_3_8, RELEASE_3_8) Add ImmunoOncology biocViews term by Kayla-Morrell <kayla.morrell@roswellpark.org> 2019-01-04 13:29:49 -0500;
  • 891dc6f Add ImmunoOncology biocViews term by Kayla-Morrell <kayla.morrell@roswellpark.org> 2019-01-04 13:29:47 -0500;
  • 0bb862d bump x.y.z versions to odd y after creation of RELEASE_3_8 branch by vobencha <vobencha@gmail.com> 2018-10-30 11:54:37 -0400;
  • 0cf14a9 bump x.y.z versions to even y prior to creation of RELEASE_3_8 branch by vobencha <vobencha@gmail.com> 2018-10-30 11:42:03 -0400;
  • 14b0cad Modified reference to 'biocLite' to 'install' by Daniel Van Twisk <daniel.vantwisk@roswellpark.org> 2018-09-06 15:31:58 -0400;
  • 55f4055 replace BiocInstaller biocLite mentions with BiocManager by LiNk-NY <mramos09@gmail.com> 2018-08-30 13:47:49 -0400;
  • 03d362f bump x.y.z versions to odd y after creation of RELEASE_3_7 branch by vobencha <valerie.obenchain@roswellpark.org> 2018-04-30 10:41:42 -0400;
  • 31a4d76 (origin/RELEASE_3_7, RELEASE_3_7) bump x.y.z versions to even y prior to creation of RELEASE_3_7 branch by vobencha <valerie.obenchain@roswellpark.org> 2018-04-30 10:35:45 -0400;
  • 82ce4fa bump x.y.z versions to odd y after creation of RELEASE_3_6 branch by Hervé Pagès <hpages@fredhutch.org> 2017-10-30 12:54:30 -0400;
  • 6ca764d (origin/RELEASE_3_6, RELEASE_3_6) bump x.y.z versions to even y prior to creation of RELEASE_3_6 branch by Hervé Pagès <hpages@fredhutch.org> 2017-10-30 12:41:25 -0400;
  • 7860c50 bump x.y.z versions to odd y after creation of 3_5 branch by Herve Pages <hpages@fhcrc.org> 2017-04-24 19:50:57 +0000;
  • 88649fc (origin/RELEASE_3_5, RELEASE_3_5) Creating branch for BioC 3.5 release by Herve Pages <hpages@fhcrc.org> 2017-04-24 19:45:44 +0000;
  • 02d390c bump x.y.z versions to even y prior to creation of 3_5 branch by Herve Pages <hpages@fhcrc.org> 2017-04-24 19:25:24 +0000;
  • 07d9063 Adding goSTAG, splatter, karyoploteR, discordant, POST, MCbiclust by Martin Morgan <mtmorgan@fhcrc.org> 2017-01-12 16:40:31 +0000;
  • 0a8dd9f changed R dependency by siskac <siska.charlotte@gmail.com> 2017-01-09 18:51:12 -0700;
  • 93242f4 Merge branch 'release-0.99.7' by siskac <siska.charlotte@gmail.com> 2017-01-02 17:26:22 -0700;
  • 6e6350e cleaned up git issues by siskac <siska.charlotte@gmail.com> 2017-01-02 17:26:04 -0700;
  • a5a3dc3 using ours by siskac <siska.charlotte@gmail.com> 2017-01-02 16:44:06 -0700;
  • 7e5618e R updates by siskac <siska.charlotte@gmail.com> 2017-01-02 16:36:30 -0700;
  • 3666fcb bumped version to 0.99.6 by siskac <siska.charlotte@gmail.com> 2017-01-02 16:34:18 -0700;
  • fd50a36 Merge branch 'release-0.99.6' by siskac <siska.charlotte@gmail.com> 2017-01-02 15:53:46 -0700;
  • 71e03ac set DESC to 0.99.6 by siskac <siska.charlotte@gmail.com> 2017-01-02 15:51:27 -0700;
  • 526ac77 updated R, vignette and DESC by siskac <siska.charlotte@gmail.com> 2017-01-02 15:49:38 -0700;
  • 1466efb add stuff by siskac <siska.charlotte@gmail.com> 2016-12-18 20:13:37 -0700;
  • 0d0d4ab make sure split MAD outlier has correct code by siskac <siska.charlotte@gmail.com> 2016-12-18 20:09:00 -0700;
  • f60e485 Merge branch 'release-0.99.5' into develop by siskac <siska.charlotte@gmail.com> 2016-12-11 13:39:58 -0700;
  • 8bd078c Merge branch 'release-0.99.5' by siskac <siska.charlotte@gmail.com> 2016-12-11 13:39:41 -0700;
  • bb6cb93 updated DESC for 0.99.5 by siskac <siska.charlotte@gmail.com> 2016-12-11 13:39:20 -0700;
  • 7b9a67c Merge branch 'release-0.99.5' into develop by siskac <siska.charlotte@gmail.com> 2016-12-11 13:38:34 -0700;
  • 51ad63b Merge branch 'release-0.99.5' by siskac <siska.charlotte@gmail.com> 2016-12-11 13:37:52 -0700;
  • 37b33d1 fixed errors, version 0.99.5 by siskac <siska.charlotte@gmail.com> 2016-12-11 13:37:02 -0700;
  • e75592a Merge branch 'release-0.99.3' into develop by siskac <siska.charlotte@gmail.com> 2016-12-09 16:47:27 -0700;
  • 44b4ea6 Merge branch 'release-0.99.3' by siskac <siska.charlotte@gmail.com> 2016-12-09 16:47:07 -0700;
  • 7da8674 bumped 0.99.3 update DESC by siskac <siska.charlotte@gmail.com> 2016-12-09 16:46:29 -0700;
  • c36b498 Merge branch 'release-0.99.3' by siskac <siska.charlotte@gmail.com> 2016-12-09 16:42:23 -0700;
  • 5ec461e bumped version 0.99.3 by siskac <siska.charlotte@gmail.com> 2016-12-09 16:42:05 -0700;
  • 5dd0e6e bumped version to 0.99.2 try 2 by siskac <siska.charlotte@gmail.com> 2016-12-09 16:10:42 -0700;
  • 10b5b3e Merge branch 'release-0.99.2' by siskac <siska.charlotte@gmail.com> 2016-12-08 14:50:46 -0700;
  • 296ef38 bumped version to 0.99.2 by siskac <siska.charlotte@gmail.com> 2016-12-08 14:50:18 -0700;
  • 3420052 bumped version to 0.99.1 by siskac <siska.charlotte@gmail.com> 2016-11-29 10:43:27 -0700;
  • d36b46f Merge branch 'release-0.99.1' into develop by siskac <siska.charlotte@gmail.com> 2016-11-29 10:45:12 -0700;
  • d9521fb bumped version to 0.99.1 by siskac <siska.charlotte@gmail.com> 2016-11-29 10:43:27 -0700;
  • cf2448e register routines by siskac <siska.charlotte@gmail.com> 2016-11-22 11:59:16 -0700;
  • 8ed4e77 bumped version by siskac <siska.charlotte@gmail.com> 2016-11-22 11:14:38 -0700;